Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 1.0e-41 172.9 83 100.0
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 1.4e-14 82.8 53 75.5
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 7.5e-13 77.0 53 71.7
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 1.7e-12 75.9 55 69.1
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 4.8e-12 74.3 53 67.9
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.1e-11 71.6 51 62.7
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 4.1e-11 71.2 53 67.9
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 7.0e-11 70.5 50 68.0
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 7.0e-11 70.5 55 61.8
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 7.0e-11 70.5 55 61.8
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 9.1e-11 70.1 53 64.2
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.0e-10 68.9 55 60.0
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.7e-10 68.6 51 64.7
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 2.2e-09 65.5 54 57.4
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 2.2e-09 65.5 48 60.4
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.2e-09 65.5 55 56.4
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 3.8e-09 64.7 55 54.5
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 5.0e-09 64.3 58 53.4
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 5.0e-09 64.3 44 61.4
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 5.0e-09 64.3 59 50.8
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 6.5e-09 63.9 48 60.4
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 6.5e-09 63.9 48 58.3
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 8.5e-09 63.5 51 58.8
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 8.5e-09 63.5 52 61.5
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 8.5e-09 63.5 55 56.4
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 1.1e-08 63.2 54 55.6
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 1.1e-08 63.2 48 60.4
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.5e-08 62.8 47 66.0
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.5e-08 62.8 47 66.0
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.5e-08 62.8 54 55.6
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 2.5e-08 62.0 58 53.4
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 2.5e-08 62.0 53 54.7
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 3.2e-08 61.6 55 61.8
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 5.5e-08 60.8 53 54.7
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 7.2e-08 60.5 48 54.2
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 7.2e-08 60.5 52 57.7
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 7.2e-08 60.5 51 56.9
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 9.4e-08 60.1 50 58.0
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 9.4e-08 60.1 52 57.7
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 1.2e-07 59.7 57 52.6
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.2e-07 59.7 52 53.8
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.6e-07 59.3 43 62.8
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 1.6e-07 59.3 51 56.9
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 2.1e-07 58.9 58 50.0
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 2.1e-07 58.9 51 54.9
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 2.1e-07 58.9 57 45.6
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 2.7e-07 58.5 52 51.9
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 3.6e-07 58.2 55 49.1
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 3.6e-07 58.2 52 53.8
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.6e-07 58.2 48 58.3
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 3.6e-07 58.2 48 58.3
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 3.6e-07 58.2 38 71.1
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 3.6e-07 58.2 47 57.4
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 3.6e-07 58.2 54 48.1
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 4.7e-07 57.8 47 53.2
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 4.7e-07 57.8 46 60.9
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 4.7e-07 57.8 55 50.9
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 6.1e-07 57.4 50 56.0
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 6.1e-07 57.4 53 54.7
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 8.0e-07 57.0 48 58.3
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 8.0e-07 57.0 48 58.3
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 8.0e-07 57.0 44 61.4
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 1.0e-06 56.6 48 60.4
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.0e-06 56.6 43 58.1
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 1.0e-06 56.6 51 51.0
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.0e-06 56.6 55 45.5
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 1.4e-06 56.2 58 46.6
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.4e-06 56.2 58 53.4
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 1.4e-06 56.2 51 52.9
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.8e-06 55.8 56 50.0
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.8e-06 55.8 57 50.9
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 1.8e-06 55.8 46 58.7
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 1.8e-06 55.8 46 58.7
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 1.8e-06 55.8 60 50.0
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 2.3e-06 55.5 58 46.6
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 2.3e-06 55.5 52 50.0
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 2.3e-06 55.5 52 50.0
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.0e-06 55.1 47 55.3
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 4.0e-06 54.7 54 51.9
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 4.0e-06 54.7 54 51.9
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 4.0e-06 54.7 47 51.1
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 4.0e-06 54.7 55 50.9
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 5.2e-06 54.3 46 52.2
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 5.2e-06 54.3 41 58.5
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.2e-06 54.3 48 54.2
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 6.8e-06 53.9 57 50.9
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 6.8e-06 53.9 58 48.3
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 8.8e-06 53.5 41 56.1
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 8.8e-06 53.5 57 50.9
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 8.8e-06 53.5 57 47.4
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 8.8e-06 53.5 57 47.4
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 8.8e-06 53.5 54 53.7
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 8.8e-06 53.5 55 50.9
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 8.8e-06 53.5 51 49.0


User provided reference genes

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