Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.3e-172 609.8 337 100.0
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 6.5e-164 580.9 337 94.7
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 9.7e-160 567.0 337 92.6
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 9.4e-155 550.4 337 89.9
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.8e-150 536.2 338 87.3
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 5.3e-150 534.6 337 86.6
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 2.6e-149 532.3 337 86.9
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 7.7e-149 530.8 337 86.6
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 1.3e-148 530.0 337 86.1
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.7e-148 529.6 337 86.1
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 1.7e-148 529.6 337 86.1
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.7e-148 529.6 338 87.0
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 5.0e-148 528.1 337 86.4
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 5.0e-148 528.1 337 86.9
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 8.5e-148 527.3 337 85.8
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 8.5e-148 527.3 337 86.4
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 1.4e-147 526.6 337 82.2
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 1.9e-147 526.2 337 85.8
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 2.5e-147 525.8 337 85.5
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 2.5e-147 525.8 337 85.8
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 5.5e-147 524.6 337 86.4
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 7.2e-147 524.2 337 85.8
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 7.2e-147 524.2 337 85.8
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 9.4e-147 523.9 338 84.6
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 1.2e-146 523.5 339 85.8
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 4.7e-146 521.5 337 84.9
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 6.1e-146 521.2 338 87.0
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 6.1e-146 521.2 341 85.6
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 1.0e-145 520.4 338 82.2
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 1.0e-145 520.4 337 85.2
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 1.8e-145 519.6 337 84.9
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 2.3e-145 519.2 337 84.3
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 3.9e-145 518.5 337 84.9
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 3.9e-145 518.5 337 84.6
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 5.1e-145 518.1 337 84.9
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 6.7e-145 517.7 338 81.4
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 1.5e-144 516.5 338 83.1
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 2.0e-144 516.2 337 84.3
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.0e-144 516.2 337 84.0
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 4.4e-144 515.0 338 81.1
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 5.7e-144 514.6 340 84.1
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 1.3e-143 513.5 338 82.8
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 2.2e-143 512.7 338 84.3
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 2.8e-143 512.3 337 84.9
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 2.8e-143 512.3 349 82.8
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 3.7e-143 511.9 336 83.6
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 3.7e-143 511.9 336 83.6
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 4.8e-143 511.5 337 84.3
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 6.3e-143 511.1 337 85.8
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 8.2e-143 510.8 354 83.1
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.1e-142 510.4 337 85.2
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 5.3e-142 508.1 338 82.8
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 5.3e-142 508.1 339 85.3
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 5.3e-142 508.1 337 84.3
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.5e-141 506.5 337 83.1
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.0e-141 506.1 337 77.2
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.0e-141 506.1 340 83.8
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 4.5e-141 505.0 337 83.7
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.0e-140 503.8 337 84.0
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.0e-140 503.8 337 84.0
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 1.0e-140 503.8 337 84.0
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 1.0e-140 503.8 337 84.0
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.3e-140 503.4 337 82.2
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 2.2e-140 502.7 340 83.8
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 1.9e-139 499.6 337 83.7
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 3.2e-139 498.8 321 84.4
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 3.2e-139 498.8 337 82.5
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 4.2e-139 498.4 355 79.7
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 4.2e-139 498.4 355 79.7
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 4.2e-139 498.4 372 76.9
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 4.2e-139 498.4 337 82.5
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 1.6e-138 496.5 339 82.0
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 2.1e-138 496.1 359 80.5
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 6.1e-138 494.6 338 81.1
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 6.1e-138 494.6 338 81.1
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 6.1e-138 494.6 337 84.0
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 8.0e-138 494.2 346 80.9
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 1.4e-137 493.4 339 81.7
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 1.8e-137 493.0 349 80.5
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 5.2e-137 491.5 337 80.7
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 1.1e-136 490.3 330 84.2
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 2.6e-136 489.2 330 81.8
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 2.6e-136 489.2 347 79.0
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 4.4e-136 488.4 365 76.4
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 2.2e-135 486.1 333 82.6
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.2e-135 486.1 366 78.1
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.2e-135 486.1 366 78.1
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 2.2e-135 486.1 338 81.7
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.4e-134 483.4 337 81.6
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 2.4e-134 482.6 321 84.4
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 1.2e-133 480.3 352 78.7
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 2.6e-133 479.2 337 80.7
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 5.9e-133 478.0 321 83.5
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.0e-132 477.2 340 76.5
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 1.0e-132 477.2 349 79.1
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 2.2e-132 476.1 337 78.3
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 2.9e-132 475.7 337 74.8
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 3.8e-132 475.3 337 78.9
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 6.5e-132 474.6 368 75.3
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.5e-131 473.4 325 82.5
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.5e-131 473.4 325 82.5
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 3.2e-131 472.2 338 79.3
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 9.4e-131 470.7 377 73.2
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 3.1e-126 455.7 337 70.6
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 5.0e-124 448.4 305 83.6
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 7.2e-123 444.5 338 76.6
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.1e-122 443.0 337 76.0
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 6.6e-116 421.4 352 70.2
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 6.6e-116 421.4 284 83.8
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 3.0e-113 412.5 516 53.1
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 3.0e-113 412.5 334 74.9
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.2e-110 402.5 338 73.1
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 2.7e-109 399.4 224 86.6
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 1.3e-108 397.1 274 84.7
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 2.3e-100 369.8 320 71.2
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 6.2e-98 361.7 321 69.8
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.2e-96 357.5 337 66.5
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 3.9e-92 342.4 255 80.0
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 8.6e-92 341.3 277 71.1
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 3.1e-89 332.8 337 62.6
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 3.2e-86 322.8 381 47.8
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.5e-80 303.9 330 52.1
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 5.4e-78 295.4 165 86.1
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 1.3e-63 247.7 183 69.4
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 1.1e-62 244.6 326 45.4
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 4.3e-59 232.6 213 71.4
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 8.7e-52 208.4 116 82.8
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 1.3e-47 194.5 165 66.7
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.5e-43 180.3 82 100.0
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.0e-36 158.3 91 85.7
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.1e-33 148.3 89 87.6
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.5e-32 144.4 89 83.1
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 2.5e-22 110.5 55 92.7
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.2e-21 108.2 64 89.1
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 3.7e-18 96.7 201 29.9
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 5.3e-17 92.8 233 29.6
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 39 92.3
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.8e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.8e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.8e-10 69.7 78 73.1


User provided reference genes

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