Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 0.0e+00 1167.5 604 100.0
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 5.7e-304 1047.0 612 86.6
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 7.0e-294 1013.4 611 85.1
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 7.0e-294 1013.4 611 85.1
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 2.0e-293 1011.9 611 83.1
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 3.8e-292 1007.7 614 83.2
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 2.3e-289 998.4 612 82.5
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 3.1e-286 988.0 611 81.0
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 2.8e-282 974.9 610 82.1
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 8.0e-282 973.4 612 80.2
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 5.7e-280 967.2 612 80.1
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 1.7e-279 965.7 614 80.9
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 6.4e-279 963.8 612 79.6
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 6.4e-279 963.8 620 80.6
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 1.4e-278 962.6 613 79.3
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 3.2e-278 961.4 611 79.2
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 1.6e-277 959.1 610 79.5
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 5.9e-277 957.2 611 79.1
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 6.6e-276 953.7 612 78.6
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 3.3e-275 951.4 586 80.5
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 5.6e-275 950.7 611 78.7
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 3.6e-274 948.0 612 78.3
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 3.6e-274 948.0 610 77.9
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 1.0e-273 946.4 612 78.1
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 1.8e-273 945.7 627 77.5
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 2.3e-273 945.3 639 77.5
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 4.0e-273 944.5 612 77.9
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 1.3e-271 939.5 601 77.7
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 1.7e-271 939.1 610 77.5
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 8.3e-271 936.8 600 77.7
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 3.2e-270 934.9 607 79.4
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 5.4e-270 934.1 585 79.5
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 9.2e-270 933.3 610 77.9
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 6.6e-268 927.2 611 76.4
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 1.5e-267 926.0 606 77.4
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 2.5e-267 925.2 652 73.6
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 3.3e-267 924.9 583 78.6
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 9.5e-267 923.3 606 77.1
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 9.5e-267 923.3 600 76.7
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 1.1e-265 919.8 611 75.9
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 2.0e-264 915.6 585 77.9
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 5.4e-262 907.5 587 77.0
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 4.6e-261 904.4 614 75.6
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 6.0e-261 904.0 589 76.4
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 7.8e-261 903.7 614 75.6
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 5.1e-260 901.0 500 86.8
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 3.3e-259 898.3 591 77.7
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 9.5e-259 896.7 584 77.9
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 1.4e-257 892.9 609 75.7
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 8.9e-257 890.2 609 75.5
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 6.4e-255 884.0 613 74.6
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 5.4e-254 880.9 611 73.3
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 7.1e-254 880.6 500 85.4
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 1.6e-253 879.4 614 74.1
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 1.6e-253 879.4 599 74.1
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 3.0e-252 875.2 596 74.7
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 1.1e-251 873.2 598 74.4
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 5.6e-251 870.9 590 74.7
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 7.3e-251 870.5 608 73.5
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 1.6e-250 869.4 599 74.1
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 1.1e-249 866.7 575 76.7
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 2.4e-249 865.5 619 72.7
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 1.2e-248 863.2 500 83.2
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 9.9e-248 860.1 637 71.3
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 2.9e-247 858.6 603 73.5
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 3.8e-247 858.2 701 66.2
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 1.9e-246 855.9 605 73.4
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 5.4e-246 854.4 611 71.8
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 3.5e-245 851.7 501 83.0
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 1.7e-244 849.4 591 73.3
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 2.3e-244 849.0 593 73.0
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 1.5e-243 846.3 783 59.8
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 2.1e-242 842.4 587 72.9
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 3.6e-242 841.6 587 73.1
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 4.8e-242 841.3 629 69.8
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 4.8e-242 841.3 633 69.7
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 1.4e-241 839.7 603 72.6
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 2.4e-241 839.0 628 69.6
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 5.8e-240 834.3 603 71.0
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 3.9e-236 821.6 614 69.5
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 2.2e-231 805.8 578 71.3
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 9.6e-227 790.4 520 76.7
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 8.2e-226 787.3 611 66.6
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 6.9e-225 784.3 498 78.5
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 8.4e-223 777.3 590 67.8
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 1.4e-222 776.5 615 67.5
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 7.1e-222 774.2 583 67.6
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 1.2e-221 773.5 742 58.0
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 1.6e-213 746.5 656 63.1
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 1.1e-209 733.8 589 66.9
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 5.0e-207 724.9 461 79.0
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 2.6e-203 712.6 500 69.4
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 9.7e-203 710.7 498 69.1
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 1.2e-200 703.7 614 59.8
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 7.7e-200 701.0 611 63.2
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 3.3e-195 685.6 593 60.7
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 1.4e-193 680.2 494 67.2
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 3.8e-191 672.2 451 74.3
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 2.3e-188 662.9 451 74.9
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 3.3e-166 589.3 413 71.4
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.8e-140 503.8 334 76.0
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 6.8e-140 501.9 389 66.8
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 4.9e-138 495.7 270 84.8
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 1.4e-137 494.2 287 86.4
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 1.9e-129 467.2 309 75.7
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 5.8e-123 445.7 500 48.2
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 6.9e-116 422.2 351 64.7
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 3.1e-100 370.2 258 72.9
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 2.0e-91 340.9 252 68.3
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 1.0e-90 338.6 187 87.7
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 2.2e-82 310.8 279 57.3
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 2.7e-72 277.3 445 38.0
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 1.3e-66 258.5 225 64.4
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 5.7e-62 243.0 180 66.7
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 8.0e-56 222.6 133 81.2
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 8.9e-55 219.2 108 88.9
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 2.0e-51 208.0 373 37.8
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 9.5e-49 199.1 137 74.5
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 8.3e-45 186.0 176 57.4
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 8.9e-39 166.0 109 67.0
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 1.2e-35 155.6 160 56.9
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 8.6e-34 149.4 191 50.8
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 7.1e-28 129.8 191 47.6
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 6.6e-26 123.2 66 84.8
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 3.3e-25 120.9 267 31.1
QL04p021235 Quercus lobata HOM05D006110 ORTHO05D011410 9.6e-09 66.2 55 72.7
vmacro23293 Vaccinium macrocarpon HOM05D000003 ORTHO05D000006 9.9e-06 56.2 39 71.8


User provided reference genes

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