Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1010000 Malus domestica HOM05D002931 ORTHO05D003273 2.8e-18 94.4 51 100.0
Prupe.1G342700 Prunus persica HOM05D002931 ORTHO05D003273 4.3e-11 70.5 53 81.1
VMungo0251G1797 Vigna mungo HOM05D002931 ORTHO05D003273 3.4e-08 60.8 44 70.5
Peaxi162Scf00097g01810 Petunia axillaris HOM05D002931 ORTHO05D003273 4.4e-08 60.5 32 87.5
Potri.010G098200 Populus trichocarpa HOM05D002931 ORTHO05D003273 7.6e-08 59.7 50 64.0
CANSAT64G0742 Cannabis sativa HOM05D002931 ORTHO05D003273 9.9e-08 59.3 50 64.0
Lj6C725G8 Lonicera japonica HOM05D002931 ORTHO05D003273 9.9e-08 59.3 38 76.3
Aa31LG2G7780 Aethionema arabicum HOM05D002931 ORTHO05D003273 1.3e-07 58.9 44 68.2
arahy.Tifrunner.gnm1.ann1.QW19KK Arachis hypogaea HOM05D002931 ORTHO05D003273 1.3e-07 58.9 49 65.3
Lj4g0006208 Lotus japonicus HOM05D002931 ORTHO05D003273 1.7e-07 58.5 33 78.8
Phvul.002G186300 Phaseolus vulgaris HOM05D002931 ORTHO05D003273 1.7e-07 58.5 44 68.2
Actinidia12422 Actinidia chinensis HOM05D002931 ORTHO05D003273 2.2e-07 58.2 26 100.0
COL.COLO4_27513 Corchorus olitorius HOM05D002931 ORTHO05D003273 2.2e-07 58.2 27 96.3
Dinv06218 Davidia involucrata HOM05D002931 ORTHO05D003273 2.2e-07 58.2 26 100.0
Duzib248G0685 Durio zibethinus HOM05D002931 ORTHO05D003273 2.2e-07 58.2 27 96.3
Duzib251G0035 Durio zibethinus HOM05D002931 ORTHO05D003273 2.2e-07 58.2 27 96.3
Thecc.02G296000 Theobroma cacao HOM05D002931 ORTHO05D003273 2.2e-07 58.2 27 96.3
vmacro10786 Vaccinium macrocarpon HOM05D002931 ORTHO05D003273 2.2e-07 58.2 27 96.3
CSS0049784 Camellia sinensis var. sinensis HOM05D002931 ORTHO05D003273 2.9e-07 57.8 34 82.4
Nn4g24879 Nelumbo nucifera HOM05D002931 ORTHO05D003273 2.9e-07 57.8 29 86.2
TAR629G2161 Trochodendron aralioides HOM05D002931 ORTHO05D003273 2.9e-07 57.8 29 86.2
arahy.Tifrunner.gnm1.ann1.FAG6RL Arachis hypogaea HOM05D002931 ORTHO05D003273 3.8e-07 57.4 50 70.0
CiPaw.06G057100 Carya illinoinensis HOM05D002931 ORTHO05D003273 3.8e-07 57.4 28 89.3
CDE04G2689 Ceratophyllum demersum HOM05D002931 ORTHO05D003273 3.8e-07 57.4 31 77.4
CsaV3_5G012550 Cucumis sativus L. HOM05D002931 ORTHO05D003273 3.8e-07 57.4 52 59.6
Glyma.05G135800 Glycine max HOM05D002931 ORTHO05D003273 3.8e-07 57.4 50 60.0
Psat7g086440 Pisum sativum HOM05D002931 ORTHO05D003273 3.8e-07 57.4 49 61.2
THA.LOC104824107 Tarenaya hassleriana HOM05D002931 ORTHO05D003273 3.8e-07 57.4 36 77.8
MSTRG.13667 Avicennia marina HOM05D002931 ORTHO05D003273 4.9e-07 57.0 49 65.3
BcaB07g30706 Brassica carinata HOM05D002931 ORTHO05D003273 4.9e-07 57.0 34 76.5
MELO3C022593.2 Cucumis melo HOM05D002931 ORTHO05D003273 4.9e-07 57.0 52 59.6
Duzib268G1680 Durio zibethinus HOM05D002931 ORTHO05D003273 4.9e-07 57.0 27 92.6
Oeu044053.1 Olea europaea HOM05D002931 ORTHO05D003273 4.9e-07 57.0 49 63.3
Ca_18209_v3 Cicer arietinum L. HOM05D002931 ORTHO05D003273 6.4e-07 56.6 30 83.3
TPR.G34760 Trifolium pratense HOM05D002931 ORTHO05D003273 6.4e-07 56.6 30 83.3
EL10Ac6g15402 Beta vulgaris HOM05D002931 ORTHO05D003273 8.4e-07 56.2 35 77.1
ClCG11G000800 Citrullus lanatus HOM05D002931 ORTHO05D003273 8.4e-07 56.2 53 58.5
DCAR_023511 Daucus carota HOM05D002931 ORTHO05D003273 8.4e-07 56.2 34 73.5
Eucgr.G02557 Eucalyptus grandis HOM05D002931 ORTHO05D003273 8.4e-07 56.2 33 78.8
Gohir.A01G145836 Gossypium hirsutum HOM05D002931 ORTHO05D003273 8.4e-07 56.2 25 100.0
Gohir.D01G138200 Gossypium hirsutum HOM05D002931 ORTHO05D003273 8.4e-07 56.2 25 100.0
Gorai.002G167900 Gossypium raimondii HOM05D002931 ORTHO05D003273 8.4e-07 56.2 25 100.0
Manes.07G081000 Manihot esculenta HOM05D002931 ORTHO05D003273 8.4e-07 56.2 25 100.0
Manes.10G063900 Manihot esculenta HOM05D002931 ORTHO05D003273 8.4e-07 56.2 25 100.0
Nitab4.5_0000069g0600 Nicotiana tabacum HOM05D002931 ORTHO05D003273 8.4e-07 56.2 42 69.0
Nitab4.5_0007743g0010 Nicotiana tabacum HOM05D002931 ORTHO05D003273 8.4e-07 56.2 42 69.0
PGR031G0955 Punica granatum HOM05D002931 ORTHO05D003273 8.4e-07 56.2 25 100.0
SGA_v2.0_scaffold65G22206 Striga asiatica HOM05D002931 ORTHO05D003273 8.4e-07 56.2 25 100.0
DCAR_030328 Daucus carota HOM05D002931 ORTHO05D003273 1.1e-06 55.8 32 84.4
Glyma.08G091000 Glycine max HOM05D002931 ORTHO05D003273 1.4e-06 55.5 43 65.1
Lalb_Chr13g0293111 Lupinus albus HOM05D002931 ORTHO05D003273 1.4e-06 55.5 30 80.0
Sed0006180 Sechium edule HOM05D002931 ORTHO05D003273 1.4e-06 55.5 51 60.8
Aqoxy3G04227 Aquilegia oxysepala HOM05D002931 ORTHO05D003273 1.9e-06 55.1 25 96.0
AT2G02160 Arabidopsis thaliana HOM05D002931 ORTHO05D003273 1.9e-06 55.1 44 63.6
unitig_8.g4032 Utricularia gibba HOM05D002931 ORTHO05D003273 1.9e-06 55.1 30 83.3
Cc11_g03200 Coffea canephora HOM05D002931 ORTHO05D003273 3.2e-06 54.3 24 100.0
SalBow2G2773 Salvia bowleyana HOM05D002931 ORTHO05D003273 3.2e-06 54.3 30 83.3
TWI53G1306 Tripterygium wilfordii HOM05D002931 ORTHO05D003273 3.2e-06 54.3 24 100.0
Actinidia30196 Actinidia chinensis HOM05D002931 ORTHO05D003273 4.2e-06 53.9 50 58.0
Ah.02g120060 Amaranthus hybridus HOM05D002931 ORTHO05D003273 4.2e-06 53.9 26 88.5
MSTRG.2079 Avicennia marina HOM05D002931 ORTHO05D003273 4.2e-06 53.9 34 73.5
Lalb_Chr07g0188071 Lupinus albus HOM05D002931 ORTHO05D003273 4.2e-06 53.9 34 73.5
MD16G1008200 Malus domestica HOM05D002931 ORTHO05D003273 4.2e-06 53.9 50 72.0
Potri.008G144200 Populus trichocarpa HOM05D002931 ORTHO05D003273 4.2e-06 53.9 50 58.0
Solyc01g008170.3 Solanum lycopersicum HOM05D002931 ORTHO05D003273 4.2e-06 53.9 50 58.0
Solyc04g008550.4 Solanum lycopersicum HOM05D002931 ORTHO05D003273 4.2e-06 53.9 47 66.0
Sopen04g003710 Solanum pennellii HOM05D002931 ORTHO05D003273 4.2e-06 53.9 47 66.0
PGSC0003DMG400031374 Solanum tuberosum HOM05D002931 ORTHO05D003273 4.2e-06 53.9 47 66.0
HPP92_014781 Vanilla planifolia HOM05D002931 ORTHO05D003273 4.2e-06 53.9 26 88.5
Carub.0005s0123 Capsella rubella HOM05D002931 ORTHO05D003273 5.4e-06 53.5 26 92.3
Sabra08G0109200 Salix brachista HOM05D002931 ORTHO05D003273 5.4e-06 53.5 51 56.9
GSVIVG01010243001 Vitis vinifera HOM05D002931 ORTHO05D003273 5.4e-06 53.5 32 78.1
QL03p041904 Quercus lobata HOM05D002931 ORTHO05D003273 7.1e-06 53.1 26 88.5
Sopen01g003710 Solanum pennellii HOM05D002931 ORTHO05D003273 7.1e-06 53.1 31 77.4
PGSC0003DMG400016400 Solanum tuberosum HOM05D002931 ORTHO05D003273 7.1e-06 53.1 27 85.2
SGA_v2.0_scaffold140G35446 Striga asiatica HOM05D002931 ORTHO05D003273 7.1e-06 53.1 34 70.6
AUR62003472 Chenopodium quinoa HOM05D002931 ORTHO05D003273 9.3e-06 52.8 35 71.4
Ciclev10004417m.g Citrus clementina HOM05D002931 ORTHO05D003273 9.3e-06 52.8 23 100.0
FAN18G3391 Fragaria x ananassa HOM05D002931 ORTHO05D003273 9.3e-06 52.8 50 68.0
Nitab4.5_0007973g0010 Nicotiana tabacum HOM05D002931 ORTHO05D003273 9.3e-06 52.8 50 62.0
Peaxi162Scf00329g00939 Petunia axillaris HOM05D002931 ORTHO05D003273 9.3e-06 52.8 43 65.1
Sabra10G0070700 Salix brachista HOM05D002931 ORTHO05D003273 9.3e-06 52.8 23 100.0
Hund04302 Selenicereus undatus HOM05D002931 ORTHO05D003273 9.3e-06 52.8 38 71.1
THA.LOC104824102 Tarenaya hassleriana HOM05D002931 ORTHO05D003273 9.3e-06 52.8 23 100.0
unitig_22.g5616 Utricularia gibba HOM05D002931 ORTHO05D003273 9.3e-06 52.8 30 76.7


User provided reference genes

Program Settings