Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1008000 Malus domestica HOM05D005906 ORTHO05D007359 1.6e-134 483.0 296 100.0
MD16G1000200 Malus domestica HOM05D005906 ORTHO05D007359 8.6e-120 434.1 286 94.8
Prupe.1G345100 Prunus persica HOM05D005906 ORTHO05D007359 3.0e-112 409.1 286 90.2
RcHm_v2.0_Chr4g0446421 Rosa chinensis HOM05D005906 ORTHO05D007359 1.9e-103 379.8 286 83.9
FvH4_4g36700 Fragaria vesca HOM05D005906 ORTHO05D007359 3.6e-102 375.6 286 83.6
FAN12G0559 Fragaria x ananassa HOM05D005906 ORTHO05D007359 1.4e-101 373.6 284 83.5
FAN07G0309 Fragaria x ananassa HOM05D005906 ORTHO05D007359 1.5e-100 370.2 284 82.7
FAN17G1621 Fragaria x ananassa HOM05D005906 ORTHO05D007359 4.4e-100 368.6 286 82.9
Thecc.02G295800 Theobroma cacao HOM05D005906 ORTHO05D007359 1.3e-96 357.1 286 78.0
TWI74G1493 Tripterygium wilfordii HOM05D005906 ORTHO05D007359 1.6e-94 350.1 286 79.7
Cfa008717 Carpinus fangiana HOM05D005906 ORTHO05D007359 2.1e-94 349.7 286 79.4
Atru.chr11.1316 Acer truncatum HOM05D005906 ORTHO05D007359 1.4e-93 347.1 286 76.2
Glyma.12G028100 Glycine max HOM05D005906 ORTHO05D007359 1.4e-93 347.1 286 74.8
TWI53G0095 Tripterygium wilfordii HOM05D005906 ORTHO05D007359 1.8e-93 346.7 286 80.4
Duzib251G0270 Durio zibethinus HOM05D005906 ORTHO05D007359 6.9e-93 344.7 290 74.5
Gohir.D01G138300 Gossypium hirsutum HOM05D005906 ORTHO05D007359 4.4e-92 342.0 287 76.3
Gorai.002G167700 Gossypium raimondii HOM05D005906 ORTHO05D007359 4.4e-92 342.0 287 76.3
Ciclev10030612m.g Citrus clementina HOM05D005906 ORTHO05D007359 7.6e-92 341.3 286 78.0
Cpa.g.sc63.9 Carica papaya HOM05D005906 ORTHO05D007359 2.4e-90 336.3 286 74.1
CiPaw.05G166700 Carya illinoinensis HOM05D005906 ORTHO05D007359 4.2e-90 335.5 288 77.1
Glyma.11G102600 Glycine max HOM05D005906 ORTHO05D007359 4.2e-90 335.5 286 71.7
Lj3g0019719 Lotus japonicus HOM05D005906 ORTHO05D007359 4.2e-90 335.5 286 72.0
Ca_03031_v3 Cicer arietinum L. HOM05D005906 ORTHO05D007359 7.1e-90 334.7 286 73.4
Glyma.11G103100 Glycine max HOM05D005906 ORTHO05D007359 2.7e-89 332.8 286 72.7
Manes.03G080900 Manihot esculenta HOM05D005906 ORTHO05D007359 1.7e-88 330.1 286 69.9
Potri.010G170400 Populus trichocarpa HOM05D005906 ORTHO05D007359 1.7e-88 330.1 292 69.2
CANSAT64G0121 Cannabis sativa HOM05D005906 ORTHO05D007359 3.9e-88 328.9 289 74.4
Gohir.A01G145818 Gossypium hirsutum HOM05D005906 ORTHO05D007359 3.9e-88 328.9 287 74.6
VMungo1127G1981 Vigna mungo HOM05D005906 ORTHO05D007359 3.9e-88 328.9 288 72.6
COL.COLO4_16625 Corchorus olitorius HOM05D005906 ORTHO05D007359 6.6e-88 328.2 278 64.4
Dinv12052 Davidia involucrata HOM05D005906 ORTHO05D007359 4.3e-87 325.5 286 72.7
TPR.G21563 Trifolium pratense HOM05D005906 ORTHO05D007359 7.3e-87 324.7 286 71.3
Eucgr.G02565 Eucalyptus grandis HOM05D005906 ORTHO05D007359 9.6e-87 324.3 286 73.1
Phvul.011G031500 Phaseolus vulgaris HOM05D005906 ORTHO05D007359 3.6e-86 322.4 288 70.5
Nn3g18680 Nelumbo nucifera HOM05D005906 ORTHO05D007359 8.1e-86 321.2 287 74.2
Medtr4g074440 Medicago truncatula HOM05D005906 ORTHO05D007359 1.4e-85 320.5 286 67.5
TAR371G1124 Trochodendron aralioides HOM05D005906 ORTHO05D007359 1.2e-84 317.4 286 73.8
Sc10g0007040 Simmondsia chinensis HOM05D005906 ORTHO05D007359 4.5e-84 315.5 286 71.0
arahy.Tifrunner.gnm1.ann1.LWY0NT Arachis hypogaea HOM05D005906 ORTHO05D007359 5.8e-84 315.1 286 69.9
arahy.Tifrunner.gnm1.ann1.KE9NE3 Arachis hypogaea HOM05D005906 ORTHO05D007359 7.6e-84 314.7 286 69.6
PSO063G6838 Papaver somniferum HOM05D005906 ORTHO05D007359 9.9e-84 314.3 285 67.4
CSS0007611 Camellia sinensis var. sinensis HOM05D005906 ORTHO05D007359 1.7e-83 313.5 283 70.3
PSO782G0435 Papaver somniferum HOM05D005906 ORTHO05D007359 6.4e-83 311.6 285 67.0
Lalb_Chr01g0001511 Lupinus albus HOM05D005906 ORTHO05D007359 1.4e-82 310.5 278 70.1
GSVIVG01010209001 Vitis vinifera HOM05D005906 ORTHO05D007359 4.2e-82 308.9 286 72.4
Haze_11727 Corylus avellana HOM05D005906 ORTHO05D007359 9.3e-82 307.8 366 61.5
ClCG09G001670 Citrullus lanatus HOM05D005906 ORTHO05D007359 1.2e-81 307.4 275 72.0
MBI03_g33918_MAGBIO Magnolia biondii HOM05D005906 ORTHO05D007359 1.8e-80 303.5 287 68.3
Actinidia04315 Actinidia chinensis HOM05D005906 ORTHO05D007359 1.9e-79 300.1 288 68.1
Oeu022359.1 Olea europaea HOM05D005906 ORTHO05D007359 3.3e-79 299.3 287 66.9
Migut.N00351 Erythranthe guttata HOM05D005906 ORTHO05D007359 2.1e-78 296.6 286 61.5
PGR142G1078 Punica granatum HOM05D005906 ORTHO05D007359 3.6e-78 295.8 287 69.7
AUR62017662 Chenopodium quinoa HOM05D005906 ORTHO05D007359 6.2e-78 295.0 314 63.4
MELO3C024279.2 Cucumis melo HOM05D005906 ORTHO05D007359 1.4e-77 293.9 283 71.4
Aqoxy3G04280 Aquilegia oxysepala HOM05D005906 ORTHO05D007359 1.8e-77 293.5 287 63.4
EL10Ac9g22918 Beta vulgaris HOM05D005906 ORTHO05D007359 2.4e-77 293.1 293 68.9
Lju1295A4T31 Lonicera japonica HOM05D005906 ORTHO05D007359 6.9e-77 291.6 267 68.2
CsaV3_7G033650 Cucumis sativus L. HOM05D005906 ORTHO05D007359 9.0e-77 291.2 283 71.0
Sed0021796 Sechium edule HOM05D005906 ORTHO05D007359 3.4e-76 289.3 275 65.5
QL03p043450 Quercus lobata HOM05D005906 ORTHO05D007359 7.6e-76 288.1 243 79.0
Rhsim09G0071900 Rhododendron simsii HOM05D005906 ORTHO05D007359 4.9e-75 285.4 247 70.4
Psat5g190360 Pisum sativum HOM05D005906 ORTHO05D007359 7.1e-74 281.6 260 67.3
DCAR_006599 Daucus carota HOM05D005906 ORTHO05D007359 2.7e-73 279.6 287 59.6
Solyc04g008700.3 Solanum lycopersicum HOM05D005906 ORTHO05D007359 2.7e-73 279.6 273 60.4
CAN.G419.29 Capsicum annuum HOM05D005906 ORTHO05D007359 3.5e-73 279.3 273 60.4
Aa31LG8G6610 Aethionema arabicum HOM05D005906 ORTHO05D007359 6.0e-73 278.5 264 60.6
Peaxi162Scf00329g00515 Petunia axillaris HOM05D005906 ORTHO05D007359 6.0e-73 278.5 273 65.9
Sopen04g003870 Solanum pennellii HOM05D005906 ORTHO05D007359 1.8e-72 276.9 273 60.1
AUR62015199 Chenopodium quinoa HOM05D005906 ORTHO05D007359 1.9e-71 273.5 286 55.2
Sp3g17850 Schrenkiella parvula HOM05D005906 ORTHO05D007359 1.9e-71 273.5 265 57.7
HanXRQChr17g0540691 Helianthus annuus HOM05D005906 ORTHO05D007359 5.6e-71 271.9 286 57.3
Lsat_1_v5_gn_0_9300 Lactuca sativa HOM05D005906 ORTHO05D007359 7.4e-71 271.6 287 62.0
CDE08G0300 Ceratophyllum demersum HOM05D005906 ORTHO05D007359 1.6e-70 270.4 288 63.2
SGA_v2.0_scaffold317G48430 Striga asiatica HOM05D005906 ORTHO05D007359 1.6e-70 270.4 265 67.2
CARHR095360 Cardamine hirsuta HOM05D005906 ORTHO05D007359 3.7e-70 269.2 265 57.7
A05p29280 Brassica napus HOM05D005906 ORTHO05D007359 4.8e-70 268.9 264 54.9
BraA05t21811Z Brassica rapa HOM05D005906 ORTHO05D007359 4.8e-70 268.9 264 54.2
ECA246G1682 Erigeron canadensis HOM05D005906 ORTHO05D007359 8.1e-70 268.1 286 60.8
unitig_26.g9977 Utricularia gibba HOM05D005906 ORTHO05D007359 1.1e-69 267.7 271 64.6
BolC5t33205H Brassica oleracea HOM05D005906 ORTHO05D007359 1.4e-69 267.3 264 53.8
Nitab4.5_0001983g0010 Nicotiana tabacum HOM05D005906 ORTHO05D007359 1.4e-69 267.3 294 56.1
C05p44790 Brassica napus HOM05D005906 ORTHO05D007359 1.8e-69 266.9 264 53.8
Thhalv10020134m.g Eutrema salsugineum HOM05D005906 ORTHO05D007359 2.4e-69 266.5 265 60.8
Carub.0003s1972 Capsella rubella HOM05D005906 ORTHO05D007359 4.5e-68 262.3 260 58.1
Nitab4.5_0000129g0240 Nicotiana tabacum HOM05D005906 ORTHO05D007359 1.4e-66 257.3 281 58.0
SEGI_19557 Sequoiadendron giganteum HOM05D005906 ORTHO05D007359 4.6e-65 252.3 288 59.0
SEGI_30722 Sequoiadendron giganteum HOM05D005906 ORTHO05D007359 4.6e-65 252.3 288 59.0
AT3G19840 Arabidopsis thaliana HOM05D005906 ORTHO05D007359 2.3e-64 250.0 265 57.0
AL3G33350 Arabidopsis lyrata HOM05D005906 ORTHO05D007359 2.5e-63 246.5 242 53.3
Os10g0485000 Oryza sativa ssp. japonica HOM05D005906 ORTHO05D007359 7.6e-60 235.0 267 58.1
Zm00001eb221360 Zea mays HOM05D005906 ORTHO05D007359 7.6e-60 235.0 268 59.7
HanXRQChr13g0425271 Helianthus annuus HOM05D005906 ORTHO05D007359 1.2e-57 227.6 286 45.8
SMO347G0007 Selaginella moellendorffii HOM05D005906 ORTHO05D007359 3.3e-55 219.5 268 45.5
Mapoly0048s0088 Marchantia polymorpha HOM05D005906 ORTHO05D007359 2.2e-54 216.9 282 56.4
Pp3c7_20890 Physcomitrium patens HOM05D005906 ORTHO05D007359 9.1e-53 211.5 289 52.6
BcaB06g26053 Brassica carinata HOM05D005906 ORTHO05D007359 5.0e-51 205.7 284 43.0
ATR0618G367 Amborella trichopoda HOM05D005906 ORTHO05D007359 1.9e-50 203.8 169 62.1
vmacro16014 Vaccinium macrocarpon HOM05D005906 ORTHO05D007359 9.4e-50 201.4 188 69.7
Pp3c11_2890 Physcomitrium patens HOM05D005906 ORTHO05D007359 2.1e-49 200.3 269 53.5
CBR_g3777 Chara braunii HOM05D005906 ORTHO05D007359 5.0e-43 179.1 280 50.4
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 4.2e-42 176.0 185 62.2
HPP92_015160 Vanilla planifolia HOM05D005906 ORTHO05D007359 3.7e-38 162.9 171 69.6
CDE04G3187 Ceratophyllum demersum HOM05D005906 ORTHO05D007359 2.7e-33 146.7 157 65.6
Psat7g176560 Pisum sativum HOM05D005906 ORTHO05D007359 3.7e-30 136.3 183 59.0
Hma1.2p1_0933F.1_g238315 Hydrangea macrophylla HOM05D005906 ORTHO05D007359 8.0e-25 118.6 106 58.5
Hma1.2p1_2428F.1_g322000 Hydrangea macrophylla HOM05D005906 ORTHO05D007359 8.0e-25 118.6 106 58.5
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.0e-24 118.2 94 62.8
CDE04G0879 Ceratophyllum demersum HOM05D005906 ORTHO05D007359 2.9e-19 100.1 112 53.6
Ca_03028_v3 Cicer arietinum L. HOM05D000001 ORTHO05D010984 1.2e-09 68.2 54 66.7
Atru.chr11.1229 Acer truncatum HOM05D005906 ORTHO05D007359 5.2e-08 62.8 43 76.7
QL03p043467 Quercus lobata HOM05D005906 ORTHO05D007359 1.5e-07 61.2 43 74.4
MCO09G642 Micromonas commoda HOM05D005906 ORTHO05D007359 2.6e-07 60.5 287 28.6
Cre09.g393551 Chlamydomonas reinhardtii HOM05D005906 ORTHO05D007359 4.4e-07 59.7 130 30.8


User provided reference genes

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