Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1125700 Malus domestica HOM05D001601 ORTHO05D002628 4.6e-183 644.4 324 100.0
MD05G1122900 Malus domestica HOM05D001601 ORTHO05D002628 2.5e-144 515.8 431 66.1
Prupe.8G166800 Prunus persica HOM05D001601 ORTHO05D002628 2.7e-103 379.4 442 52.7
RcHm_v2.0_Chr6g0278441 Rosa chinensis HOM05D001601 ORTHO05D002628 1.5e-64 250.8 423 44.4
Cfa005256 Carpinus fangiana HOM05D001601 ORTHO05D002628 2.5e-64 250.0 451 41.5
CiPaw.06G121200 Carya illinoinensis HOM05D001601 ORTHO05D002628 2.1e-63 246.9 452 41.8
FAN24G0324 Fragaria x ananassa HOM05D001601 ORTHO05D002628 4.7e-63 245.7 419 43.7
FvH4_2g15460 Fragaria vesca HOM05D001601 ORTHO05D002628 6.2e-63 245.4 419 43.7
FAN20G1511 Fragaria x ananassa HOM05D001601 ORTHO05D002628 6.2e-63 245.4 423 43.7
QL11p050977 Quercus lobata HOM05D001601 ORTHO05D002628 7.6e-61 238.4 454 39.4
Manes.04G072000 Manihot esculenta HOM05D001601 ORTHO05D002628 1.6e-58 230.7 417 39.8
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 3.9e-57 226.1 444 41.2
Dinv14116 Davidia involucrata HOM05D001601 ORTHO05D002628 8.7e-57 224.9 438 39.3
Haze_02127 Corylus avellana HOM05D001601 ORTHO05D002628 5.6e-56 222.2 427 40.3
Thecc.02G058200 Theobroma cacao HOM05D001601 ORTHO05D002628 2.4e-54 216.9 432 39.6
GSVIVG01013720001 Vitis vinifera HOM05D001601 ORTHO05D002628 2.4e-54 216.9 411 39.2
Hma1.2p1_0032F.1_g019320 Hydrangea macrophylla HOM05D001601 ORTHO05D002628 3.4e-53 213.0 439 38.3
Potri.009G136300 Populus trichocarpa HOM05D001601 ORTHO05D002628 3.4e-53 213.0 427 38.2
ClCG02G004010 Citrullus lanatus HOM05D001601 ORTHO05D002628 4.9e-52 209.1 444 37.6
Gorai.008G036900 Gossypium raimondii HOM05D001601 ORTHO05D002628 1.1e-51 208.0 441 38.3
Gohir.A12G036800 Gossypium hirsutum HOM05D001601 ORTHO05D002628 2.4e-51 206.8 443 38.4
CsaV3_5G026500 Cucumis sativus L. HOM05D001601 ORTHO05D002628 3.2e-51 206.5 447 36.0
Gohir.D12G035600 Gossypium hirsutum HOM05D001601 ORTHO05D002628 3.2e-51 206.5 442 38.5
GSVIVG01024008001 Vitis vinifera HOM05D001601 ORTHO05D002628 4.2e-51 206.1 415 38.1
CANSAT25G3111 Cannabis sativa HOM05D001601 ORTHO05D002628 5.4e-51 205.7 441 36.7
MELO3C021653.2 Cucumis melo HOM05D001601 ORTHO05D002628 5.4e-51 205.7 441 36.5
Duzib132G1094 Durio zibethinus HOM05D001601 ORTHO05D002628 1.7e-49 200.7 443 38.1
Sabra09G0105900 Salix brachista HOM05D001601 ORTHO05D002628 5.1e-49 199.1 441 36.3
Lj5g0000172 Lotus japonicus HOM05D001601 ORTHO05D002628 3.1e-46 189.9 431 34.8
Lsat_1_v5_gn_4_71800 Lactuca sativa HOM05D001601 ORTHO05D002628 9.0e-46 188.3 453 34.2
ECA234G0339 Erigeron canadensis HOM05D001601 ORTHO05D002628 7.6e-45 185.3 445 34.4
Sed0019722 Sechium edule HOM05D001601 ORTHO05D002628 1.3e-44 184.5 447 36.7
Ciclev10030105m.g Citrus clementina HOM05D001601 ORTHO05D002628 3.8e-44 183.0 441 36.7
FAN15G2735 Fragaria x ananassa HOM05D001601 ORTHO05D002628 4.9e-44 182.6 439 36.9
TAR381G1205 Trochodendron aralioides HOM05D001601 ORTHO05D002628 1.9e-43 180.6 459 33.8
Lalb_Chr02g0143431 Lupinus albus HOM05D001601 ORTHO05D002628 1.2e-42 177.9 434 34.1
CAN.G432.3 Capsicum annuum HOM05D001601 ORTHO05D002628 6.0e-42 175.6 436 35.1
Sopen08g018260 Solanum pennellii HOM05D001601 ORTHO05D002628 1.3e-41 174.5 437 33.4
Cc04_g12140 Coffea canephora HOM05D001601 ORTHO05D002628 3.0e-41 173.3 448 34.6
TWI31G0590 Tripterygium wilfordii HOM05D001601 ORTHO05D002628 5.1e-41 172.6 437 35.2
Glyma.10G281800 Glycine max HOM05D001601 ORTHO05D002628 1.9e-40 170.6 431 33.4
Solyc08g062780.2 Solanum lycopersicum HOM05D001601 ORTHO05D002628 1.9e-40 170.6 438 34.5
AL3G49670 Arabidopsis lyrata HOM05D001601 ORTHO05D002628 2.5e-40 170.2 422 34.1
AT2G16910 Arabidopsis thaliana HOM05D001601 ORTHO05D002628 9.6e-40 168.3 420 34.0
BraA07t28212Z Brassica rapa HOM05D001601 ORTHO05D002628 2.1e-39 167.2 407 33.2
CARHR107200 Cardamine hirsuta HOM05D001601 ORTHO05D002628 2.1e-39 167.2 421 35.2
VMungo0720G1541 Vigna mungo HOM05D001601 ORTHO05D002628 2.1e-39 167.2 431 33.2
Thhalv10022620m.g Eutrema salsugineum HOM05D001601 ORTHO05D002628 3.7e-39 166.4 415 33.7
Aa31LG8G14100 Aethionema arabicum HOM05D001601 ORTHO05D002628 1.4e-38 164.5 419 33.9
BcaC01g02972 Brassica carinata HOM05D001601 ORTHO05D002628 1.4e-38 164.5 409 33.7
Sp3g30190 Schrenkiella parvula HOM05D001601 ORTHO05D002628 1.4e-38 164.5 420 33.6
A03p46130 Brassica napus HOM05D001601 ORTHO05D002628 1.8e-38 164.1 409 33.7
BraA03t13741Z Brassica rapa HOM05D001601 ORTHO05D002628 1.8e-38 164.1 411 32.8
Carub.0003s3072 Capsella rubella HOM05D001601 ORTHO05D002628 3.1e-38 163.3 423 34.5
BcaC06g36193 Brassica carinata HOM05D001601 ORTHO05D002628 5.3e-38 162.5 413 34.1
C03p57610 Brassica napus HOM05D001601 ORTHO05D002628 5.3e-38 162.5 409 33.5
C07p06690 Brassica napus HOM05D001601 ORTHO05D002628 5.3e-38 162.5 413 34.1
BolC7t41091H Brassica oleracea HOM05D001601 ORTHO05D002628 5.3e-38 162.5 413 34.1
BolC3t18036H Brassica oleracea HOM05D001601 ORTHO05D002628 9.0e-38 161.8 412 33.3
A07p04210 Brassica napus HOM05D001601 ORTHO05D002628 1.2e-37 161.4 411 33.3
Oeu015561.1 Olea europaea HOM05D001601 ORTHO05D002628 1.5e-37 161.0 421 33.0
BcaB08g34676 Brassica carinata HOM05D001601 ORTHO05D002628 2.0e-37 160.6 413 33.7
Eucgr.G01783 Eucalyptus grandis HOM05D001601 ORTHO05D002628 2.0e-37 160.6 419 34.1
Atru.chr5.3376 Acer truncatum HOM05D001601 ORTHO05D002628 3.4e-37 159.8 482 32.0
THA.LOC104819650 Tarenaya hassleriana HOM05D001601 ORTHO05D002628 3.4e-37 159.8 417 32.9
BcaB03g16426 Brassica carinata HOM05D001601 ORTHO05D002628 4.5e-37 159.5 424 33.5
CSS0003134 Camellia sinensis var. sinensis HOM05D001601 ORTHO05D002628 5.8e-37 159.1 234 45.3
Medtr1g112680 Medicago truncatula HOM05D001601 ORTHO05D002628 7.6e-37 158.7 413 34.1
PGR042G3640 Punica granatum HOM05D001601 ORTHO05D002628 1.7e-36 157.5 417 34.1
MD05G1123000 Malus domestica HOM05D001601 ORTHO05D002628 8.4e-36 155.2 437 34.1
RcHm_v2.0_Chr6g0278471 Rosa chinensis HOM05D001601 ORTHO05D002628 8.4e-36 155.2 451 34.1
Rhsim05G0054200 Rhododendron simsii HOM05D001601 ORTHO05D002628 1.9e-35 154.1 420 32.9
HanXRQChr03g0071131 Helianthus annuus HOM05D001601 ORTHO05D002628 4.2e-35 152.9 450 31.6
Aqoxy2G01591 Aquilegia oxysepala HOM05D001601 ORTHO05D002628 5.5e-35 152.5 445 31.0
MSTRG.16976 Avicennia marina HOM05D001601 ORTHO05D002628 9.3e-35 151.8 426 33.8
Psat6g232480 Pisum sativum HOM05D001601 ORTHO05D002628 1.2e-34 151.4 431 30.9
FvH4_2g15470 Fragaria vesca HOM05D001601 ORTHO05D002628 1.6e-34 151.0 455 33.0
MBI08_g34004_MAGBIO Magnolia biondii HOM05D001601 ORTHO05D002628 1.6e-34 151.0 459 31.2
PGSC0003DMG400008195 Solanum tuberosum HOM05D001601 ORTHO05D002628 1.6e-34 151.0 368 34.2
TAR625G1180 Trochodendron aralioides HOM05D001601 ORTHO05D002628 2.7e-34 150.2 449 33.0
Cpa.g.sc20.95 Carica papaya HOM05D001601 ORTHO05D002628 4.6e-34 149.4 453 31.6
Peaxi162Scf00070g00045 Petunia axillaris HOM05D001601 ORTHO05D002628 4.6e-34 149.4 431 32.0
arahy.Tifrunner.gnm1.ann1.GJBP3C Arachis hypogaea HOM05D001601 ORTHO05D002628 3.0e-33 146.7 418 32.1
Lj9A394T44 Lonicera japonica HOM05D001601 ORTHO05D002628 3.3e-32 143.3 348 35.9
CSS0000255 Camellia sinensis var. sinensis HOM05D001601 ORTHO05D002628 9.6e-32 141.7 235 42.6
EL10Ac9g21368 Beta vulgaris HOM05D001601 ORTHO05D002628 4.8e-31 139.4 442 31.2
TWI75G1106 Tripterygium wilfordii HOM05D001601 ORTHO05D002628 4.8e-31 139.4 336 36.3
arahy.Tifrunner.gnm1.ann1.W4LCKL Arachis hypogaea HOM05D001601 ORTHO05D002628 8.2e-31 138.7 419 31.5
Phvul.007G019000 Phaseolus vulgaris HOM05D001601 ORTHO05D002628 8.2e-31 138.7 421 30.4
Rhsim05G0054400 Rhododendron simsii HOM05D001601 ORTHO05D002628 1.4e-30 137.9 241 42.3
THA.LOC104819656 Tarenaya hassleriana HOM05D001601 ORTHO05D002628 1.4e-30 137.9 415 30.1
Migut.B01188 Erythranthe guttata HOM05D001601 ORTHO05D002628 3.1e-30 136.7 330 35.5
Glyma.20G107466 Glycine max HOM05D001601 ORTHO05D002628 3.1e-30 136.7 262 38.9
Nitab4.5_0003730g0030 Nicotiana tabacum HOM05D001601 ORTHO05D002628 1.5e-29 134.4 374 32.9
CDE02G0907 Ceratophyllum demersum HOM05D001601 ORTHO05D002628 2.2e-28 130.6 439 28.9
TPR.G2429 Trifolium pratense HOM05D001601 ORTHO05D002628 3.8e-28 129.8 406 31.0
COL.COLO4_17355 Corchorus olitorius HOM05D001601 ORTHO05D002628 1.4e-27 127.9 270 40.7
Nn3g19711 Nelumbo nucifera HOM05D001601 ORTHO05D002628 1.4e-27 127.9 429 31.9
CiPaw.05G083200 Carya illinoinensis HOM05D001601 ORTHO05D002628 3.2e-27 126.7 265 38.9
Aqoxy4G02705 Aquilegia oxysepala HOM05D001601 ORTHO05D002628 7.1e-27 125.6 452 28.5
Prupe.8G166900 Prunus persica HOM05D001601 ORTHO05D002628 3.5e-26 123.2 353 33.4
DCAR_004707 Daucus carota HOM05D001601 ORTHO05D002628 6.1e-26 122.5 448 28.6
DCAR_004708 Daucus carota HOM05D001601 ORTHO05D002628 6.1e-26 122.5 448 28.6
Oeu015560.1 Olea europaea HOM05D001601 ORTHO05D002628 6.1e-26 122.5 270 34.4
PSO700G0026 Papaver somniferum HOM05D001601 ORTHO05D002628 3.9e-25 119.8 563 26.3
Sc14g0002300 Simmondsia chinensis HOM05D001601 ORTHO05D002628 6.7e-25 119.0 426 30.3
CSS0049556 Camellia sinensis var. sinensis HOM05D001601 ORTHO05D002628 9.7e-24 115.2 86 68.6
PSO170G4243 Papaver somniferum HOM05D001601 ORTHO05D002628 3.7e-23 113.2 89 67.4
HPP92_012948 Vanilla planifolia HOM05D001601 ORTHO05D002628 6.3e-23 112.5 214 38.3
unitig_26.g9753 Utricularia gibba HOM05D001601 ORTHO05D002628 2.6e-21 107.1 90 61.1
SEGI_08844 Sequoiadendron giganteum HOM05D001601 ORTHO05D002628 4.5e-21 106.3 414 26.8
TAR628G0026 Trochodendron aralioides HOM05D001601 ORTHO05D002628 2.2e-20 104.0 428 27.3
CDE06G0952 Ceratophyllum demersum HOM05D001601 ORTHO05D002628 2.1e-18 97.4 130 48.5
Os02g0120500 Oryza sativa ssp. japonica HOM05D001601 ORTHO05D002628 2.1e-18 97.4 277 32.1
AUR62010034 Chenopodium quinoa HOM05D001601 ORTHO05D002628 2.7e-18 97.1 240 37.9
SGA_v2.0_scaffold124G33644 Striga asiatica HOM05D001601 ORTHO05D002628 2.7e-18 97.1 366 29.0
Zm00001eb208200 Zea mays HOM05D001601 ORTHO05D002628 2.7e-18 97.1 207 36.2
ATR0304G046 Amborella trichopoda HOM05D001601 ORTHO05D002628 4.6e-18 96.3 238 33.6
SMO266G0108 Selaginella moellendorffii HOM05D001601 ORTHO05D002628 1.0e-17 95.1 232 31.5
AUR62013022 Chenopodium quinoa HOM05D001601 ORTHO05D002628 2.3e-17 94.0 244 36.5
AUR62013021 Chenopodium quinoa HOM05D001601 ORTHO05D002628 3.0e-17 93.6 89 59.6
AUR62010033 Chenopodium quinoa HOM05D001601 ORTHO05D002628 5.1e-17 92.8 89 59.6
SHI05752 Sapria himalayana HOM05D001601 ORTHO05D002628 2.5e-16 90.5 404 26.0
ATR0304G020 Amborella trichopoda HOM05D001601 ORTHO05D002628 3.7e-15 86.7 86 52.3
Pp3c3_15850 Physcomitrium patens HOM05D001601 ORTHO05D002628 4.8e-15 86.3 226 32.3
ATR0304G064 Amborella trichopoda HOM05D001601 ORTHO05D002628 1.4e-14 84.7 89 48.3
ATR0304G036 Amborella trichopoda HOM05D001601 ORTHO05D002628 5.3e-14 82.8 86 52.3
Pp3c26_4390 Physcomitrium patens HOM05D001601 ORTHO05D002628 5.3e-14 82.8 226 31.9
Nitab4.5_0024162g0010 Nicotiana tabacum HOM05D001601 ORTHO05D002628 1.5e-13 81.3 359 27.9
THA.LOC104804324 Tarenaya hassleriana HOM05D001601 ORTHO05D002628 1.7e-12 77.8 85 52.9
CARHR107180 Cardamine hirsuta HOM05D001601 ORTHO05D002628 2.2e-12 77.4 54 77.8
Nn6g34392 Nelumbo nucifera HOM05D001601 ORTHO05D002628 2.9e-12 77.0 58 69.0
AagrBONN_evm.TU.Sc2ySwM_362.2761 Anthoceros agrestis HOM05D000884 ORTHO05D002628 6.5e-12 75.9 266 27.4
ATR1155G029 Amborella trichopoda HOM05D001601 ORTHO05D002628 8.5e-12 75.5 106 42.5
ECA233G1054 Erigeron canadensis HOM05D001601 ORTHO05D002628 1.1e-11 75.1 157 33.8
vmacro16245 Vaccinium macrocarpon HOM05D001601 ORTHO05D002628 1.9e-11 74.3 382 24.3
CiPaw.06G071400 Carya illinoinensis HOM05D001601 ORTHO05D002628 2.5e-11 73.9 395 25.6
TAR622G1239 Trochodendron aralioides HOM05D001601 ORTHO05D002628 3.2e-11 73.6 81 50.6
Prupe.1G578200 Prunus persica HOM05D063924 ORTHO05D002628 4.2e-11 73.2 67 56.7
Prupe.1G059900 Prunus persica HOM05D063924 ORTHO05D002628 1.6e-10 71.2 66 56.1
Gohir.D11G067800 Gossypium hirsutum HOM05D000884 ORTHO05D002127 2.7e-10 70.5 123 39.0
Ciclev10033497m.g Citrus clementina HOM05D000884 ORTHO05D002127 3.6e-10 70.1 209 32.1
CARHR107170 Cardamine hirsuta HOM05D001601 ORTHO05D002628 4.7e-10 69.7 89 49.4
Dinv41932 Davidia involucrata HOM05D001601 ORTHO05D002628 6.1e-10 69.3 87 55.2
MD10G1125800 Malus domestica HOM05D000884 ORTHO05D002628 6.1e-10 69.3 185 34.6
Haze_12188 Corylus avellana HOM05D001601 ORTHO05D002628 1.0e-09 68.6 393 23.9
TAR629G2382 Trochodendron aralioides HOM05D001601 ORTHO05D002628 5.1e-09 66.2 80 45.0
ATR0304G028 Amborella trichopoda HOM05D001601 ORTHO05D002628 6.7e-09 65.9 55 60.0
Cfa009154 Carpinus fangiana HOM05D001601 ORTHO05D002628 8.8e-09 65.5 396 24.0
Nitab4.5_0000203g0220 Nicotiana tabacum HOM05D001601 ORTHO05D002628 2.6e-08 63.9 78 43.6
ATR1155G019 Amborella trichopoda HOM05D001601 ORTHO05D002628 9.7e-08 62.0 68 58.8
Duzib268G1820 Durio zibethinus HOM05D001601 ORTHO05D002628 8.2e-07 58.9 373 22.3
Gorai.009G337700 Gossypium raimondii HOM05D001601 ORTHO05D002628 1.1e-06 58.5 212 28.3
Manes.12G028000 Manihot esculenta HOM05D001601 ORTHO05D002628 1.1e-06 58.5 79 41.8
CAN.G1731.6 Capsicum annuum HOM05D001601 ORTHO05D002628 1.4e-06 58.2 83 36.1
SalBow6G5782 Salvia bowleyana HOM05D001601 ORTHO05D002628 1.4e-06 58.2 183 31.7
Dinv24842 Davidia involucrata HOM05D000812 ORTHO05D002628 1.8e-06 57.8 381 23.6
MD16G1093900 Malus domestica HOM05D001601 ORTHO05D002628 1.8e-06 57.8 80 43.8
Mapoly0054s0021 Marchantia polymorpha HOM05D000884 ORTHO05D006936 1.8e-06 57.8 151 35.1
CDE02G4468 Ceratophyllum demersum HOM05D001601 ORTHO05D006936 2.4e-06 57.4 163 27.0
CsaV3_5G031540 Cucumis sativus L. HOM05D001601 ORTHO05D002628 2.4e-06 57.4 198 26.3
Gohir.A05G314400 Gossypium hirsutum HOM05D001601 ORTHO05D002628 3.1e-06 57.0 212 27.8
Sed0004702 Sechium edule HOM05D001601 ORTHO05D002628 3.1e-06 57.0 387 23.5
CAN.G682.3 Capsicum annuum HOM05D001601 ORTHO05D002628 4.1e-06 56.6 83 34.9
Gohir.D05G313000 Gossypium hirsutum HOM05D001601 ORTHO05D002628 5.3e-06 56.2 212 27.8
PSO017G3589 Papaver somniferum HOM05D001601 ORTHO05D002628 5.3e-06 56.2 176 28.4
HanXRQChr08g0208711 Helianthus annuus HOM05D000884 ORTHO05D006936 9.1e-06 55.5 150 29.3
Mapoly0124s0021 Marchantia polymorpha HOM05D000884 ORTHO05D002958 9.1e-06 55.5 218 25.7
Nitab4.5_0001483g0050 Nicotiana tabacum HOM05D001601 ORTHO05D002628 9.1e-06 55.5 95 33.7


User provided reference genes

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