Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1015200 Malus domestica HOM05D001331 ORTHO05D001157 2.3e-47 191.8 93 100.0
MD17G1015200 Malus domestica HOM05D001331 ORTHO05D001157 1.1e-36 156.4 93 82.8
Prupe.3G302600 Prunus persica HOM05D001331 ORTHO05D001157 1.9e-28 129.0 93 69.9
RcHm_v2.0_Chr2g0174821 Rosa chinensis HOM05D001331 ORTHO05D001157 5.1e-26 120.9 88 67.0
FAN05G4290 Fragaria x ananassa HOM05D001331 ORTHO05D001157 8.6e-26 120.2 82 72.0
FAN09G0670 Fragaria x ananassa HOM05D001331 ORTHO05D001157 8.6e-26 120.2 82 72.0
FvH4_6g53040 Fragaria vesca HOM05D001331 ORTHO05D001157 1.2e-24 116.3 76 72.4
FvH4_6g53050 Fragaria vesca HOM05D001331 ORTHO05D001157 5.4e-20 100.9 87 59.8
RcHm_v2.0_Chr2g0174831 Rosa chinensis HOM05D001331 ORTHO05D001157 3.0e-18 95.1 87 60.9
RcHm_v2.0_Chr2g0172041 Rosa chinensis HOM05D001331 ORTHO05D001157 5.1e-18 94.4 87 56.3
Dinv33363 Davidia involucrata HOM05D001331 ORTHO05D001157 1.6e-16 89.4 69 65.2
Atru.chr6.2516 Acer truncatum HOM05D003058 ORTHO05D001157 8.1e-16 87.0 74 56.8
CANSAT64G1743 Cannabis sativa HOM05D001331 ORTHO05D001157 8.1e-16 87.0 67 65.7
Dinv25676 Davidia involucrata HOM05D001331 ORTHO05D001157 8.9e-15 83.6 68 63.2
FAN14G1168 Fragaria x ananassa HOM05D001331 ORTHO05D001157 8.9e-15 83.6 60 68.3
Cpa.g.sc130.6 Carica papaya HOM05D023558 ORTHO05D001157 3.4e-14 81.6 72 56.9
CiPaw.03G052700 Carya illinoinensis HOM05D001331 ORTHO05D001157 4.4e-14 81.3 74 58.1
Ciclev10014314m.g Citrus clementina HOM05D001331 ORTHO05D001157 4.4e-14 81.3 74 56.8
Hma1.2p1_1219F.1_g267890 Hydrangea macrophylla HOM05D001331 ORTHO05D001157 1.3e-13 79.7 69 58.0
Glyma.19G087000 Glycine max HOM05D001331 ORTHO05D001157 1.7e-13 79.3 79 49.4
Thecc.08G160900 Theobroma cacao HOM05D001331 ORTHO05D001157 1.7e-13 79.3 74 52.7
COL.COLO4_13736 Corchorus olitorius HOM05D001331 ORTHO05D001157 2.9e-13 78.6 75 53.3
Lj1g0014933 Lotus japonicus HOM05D001331 ORTHO05D001157 2.9e-13 78.6 76 56.6
QL02p072043 Quercus lobata HOM05D001331 ORTHO05D001157 2.9e-13 78.6 70 57.1
Medtr7g031420 Medicago truncatula HOM05D001331 ORTHO05D001157 4.9e-13 77.8 74 54.1
PGR083G0547 Punica granatum HOM05D001331 ORTHO05D001157 4.9e-13 77.8 82 48.8
VMungo1383G3003 Vigna mungo HOM05D001331 ORTHO05D001157 1.4e-12 76.3 73 56.2
TAR622G0469 Trochodendron aralioides HOM05D001331 ORTHO05D001157 1.9e-12 75.9 70 55.7
Haze_14837 Corylus avellana HOM05D001331 ORTHO05D001157 2.4e-12 75.5 70 55.7
arahy.Tifrunner.gnm1.ann1.TSCV7K Arachis hypogaea HOM05D001331 ORTHO05D001157 5.4e-12 74.3 74 52.7
arahy.Tifrunner.gnm1.ann1.ZV22RA Arachis hypogaea HOM05D001331 ORTHO05D001157 5.4e-12 74.3 74 52.7
Nn4g22389 Nelumbo nucifera HOM05D001331 ORTHO05D001157 5.4e-12 74.3 68 57.4
Glyma.16G060000 Glycine max HOM05D001331 ORTHO05D001157 7.1e-12 73.9 76 47.4
Hma1.2p1_0571F.1_g180730 Hydrangea macrophylla HOM05D001331 ORTHO05D001157 7.1e-12 73.9 70 55.7
Psat3g172880 Pisum sativum HOM05D001331 ORTHO05D001157 7.1e-12 73.9 81 50.6
Cc07_g00590 Coffea canephora HOM05D001331 ORTHO05D001157 1.2e-11 73.2 81 44.4
vmacro00334 Vaccinium macrocarpon HOM05D001331 ORTHO05D001157 1.2e-11 73.2 69 58.0
Manes.15G158100 Manihot esculenta HOM05D001331 ORTHO05D001157 2.1e-11 72.4 78 51.3
Sp7g01090 Schrenkiella parvula HOM05D001331 ORTHO05D001157 2.1e-11 72.4 66 54.5
A04p13890 Brassica napus HOM05D001331 ORTHO05D001157 2.7e-11 72.0 66 54.5
BraA04t17054Z Brassica rapa HOM05D001331 ORTHO05D001157 2.7e-11 72.0 66 54.5
Potri.017G067400 Populus trichocarpa HOM05D001331 ORTHO05D001157 2.7e-11 72.0 73 52.1
RcHm_v2.0_Chr2g0172131 Rosa chinensis HOM05D001331 ORTHO05D001157 3.5e-11 71.6 58 60.3
CSS0001891 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 4.6e-11 71.2 93 41.9
BcaC08g44492 Brassica carinata HOM05D001331 ORTHO05D001157 6.0e-11 70.9 66 53.0
C06p19440 Brassica napus HOM05D001331 ORTHO05D001157 6.0e-11 70.9 66 53.0
BcaB06g27563 Brassica carinata HOM05D001331 ORTHO05D001157 7.8e-11 70.5 66 53.0
Peaxi162Scf00420g00454 Petunia axillaris HOM05D001331 ORTHO05D001157 7.8e-11 70.5 84 45.2
GSVIVG01001820001 Vitis vinifera HOM05D001331 ORTHO05D001157 1.0e-10 70.1 67 55.2
Thhalv10027644m.g Eutrema salsugineum HOM05D001331 ORTHO05D001157 1.3e-10 69.7 66 53.0
BcaC02g09000 Brassica carinata HOM05D001331 ORTHO05D001157 1.7e-10 69.3 66 51.5
BolC4t26366H Brassica oleracea HOM05D001331 ORTHO05D001157 1.7e-10 69.3 66 51.5
CSS0043172 Camellia sinensis var. sinensis HOM05D001331 ORTHO05D001157 1.7e-10 69.3 70 50.0
Lalb_Chr22g0360501 Lupinus albus HOM05D001331 ORTHO05D001157 2.3e-10 68.9 73 49.3
ClCG11G006940 Citrullus lanatus HOM05D001331 ORTHO05D001157 3.0e-10 68.6 75 50.7
TWI12G0610 Tripterygium wilfordii HOM05D001331 ORTHO05D001157 3.9e-10 68.2 84 44.0
Rhsim08G0045100 Rhododendron simsii HOM05D001331 ORTHO05D001157 5.1e-10 67.8 69 53.6
Carub.0007s3466 Capsella rubella HOM05D001331 ORTHO05D001157 6.6e-10 67.4 65 50.8
CARHR213690 Cardamine hirsuta HOM05D001331 ORTHO05D001157 6.6e-10 67.4 66 50.0
CsaV3_6G001130 Cucumis sativus L. HOM05D001331 ORTHO05D001157 6.6e-10 67.4 69 52.2
DCAR_021766 Daucus carota HOM05D001331 ORTHO05D001157 6.6e-10 67.4 79 48.1
Ah.12g054720 Amaranthus hybridus HOM05D001331 ORTHO05D001157 1.1e-09 66.6 68 45.6
C04p47650 Brassica napus HOM05D001331 ORTHO05D001157 1.1e-09 66.6 66 50.0
Actinidia30892 Actinidia chinensis HOM05D001331 ORTHO05D001157 1.9e-09 65.9 84 42.9
AUR62007258 Chenopodium quinoa HOM05D001331 ORTHO05D001157 1.9e-09 65.9 71 45.1
Duzib093G1964 Durio zibethinus HOM05D001331 ORTHO05D001157 1.9e-09 65.9 65 52.3
Hund11264 Selenicereus undatus HOM05D001331 ORTHO05D001157 1.9e-09 65.9 73 41.1
Hund14414 Selenicereus undatus HOM05D001331 ORTHO05D001157 1.9e-09 65.9 68 45.6
Sopen02g038580 Solanum pennellii HOM05D001331 ORTHO05D001157 1.9e-09 65.9 76 46.1
Aqoxy5G03473 Aquilegia oxysepala HOM05D001331 ORTHO05D001157 2.5e-09 65.5 69 52.2
AT5G40840 Arabidopsis thaliana HOM05D001331 ORTHO05D001157 2.5e-09 65.5 72 47.2
HanXRQChr09g0256031 Helianthus annuus HOM05D001331 ORTHO05D001157 2.5e-09 65.5 69 46.4
ATR0686G087 Amborella trichopoda HOM05D001331 ORTHO05D001157 3.3e-09 65.1 64 45.3
Migut.H00012 Erythranthe guttata HOM05D001331 ORTHO05D001157 4.3e-09 64.7 70 48.6
Sed0009999 Sechium edule HOM05D001331 ORTHO05D001157 4.3e-09 64.7 69 50.7
PGSC0003DMG401020221 Solanum tuberosum HOM05D001331 ORTHO05D001157 4.3e-09 64.7 81 43.2
AL7G48780 Arabidopsis lyrata HOM05D001331 ORTHO05D001157 5.6e-09 64.3 72 44.4
MELO3C008211.2 Cucumis melo HOM05D001331 ORTHO05D001157 5.6e-09 64.3 67 50.7
Solyc02g093930.4 Solanum lycopersicum HOM05D001331 ORTHO05D001157 7.3e-09 63.9 76 46.1
Gohir.A05G246800 Gossypium hirsutum HOM05D001331 ORTHO05D001157 2.1e-08 62.4 69 43.5
Gorai.009G259300 Gossypium raimondii HOM05D001331 ORTHO05D001157 2.1e-08 62.4 69 43.5
PSO063G1524 Papaver somniferum HOM05D001331 ORTHO05D001157 2.8e-08 62.0 64 50.0
Aa31LG9G820 Aethionema arabicum HOM05D001331 ORTHO05D001157 3.6e-08 61.6 70 47.1
CAN.G473.78 Capsicum annuum HOM05D001331 ORTHO05D001157 3.6e-08 61.6 76 42.1
ECA232G4540 Erigeron canadensis HOM05D001331 ORTHO05D001157 3.6e-08 61.6 75 42.7
Nitab4.5_0001031g0030 Nicotiana tabacum HOM05D001331 ORTHO05D001157 3.6e-08 61.6 74 43.2
MSTRG.3092 Avicennia marina HOM05D001331 ORTHO05D001157 8.1e-08 60.5 67 46.3
PSO782G2151 Papaver somniferum HOM05D001331 ORTHO05D001157 8.1e-08 60.5 64 48.4
SGA_v2.0_scaffold18G08222 Striga asiatica HOM05D001331 ORTHO05D001157 8.1e-08 60.5 69 42.0
Mapoly0027s0147 Marchantia polymorpha HOM05D001331 ORTHO05D001157 1.4e-07 59.7 45 57.8
Gohir.D05G248300 Gossypium hirsutum HOM05D001331 ORTHO05D001157 1.8e-07 59.3 70 44.3
C03p08880 Brassica napus HOM05D001331 ORTHO05D001157 4.0e-07 58.2 72 43.1
BolC3t13383H Brassica oleracea HOM05D001331 ORTHO05D001157 4.0e-07 58.2 72 43.1
CDE09G0405 Ceratophyllum demersum HOM05D001331 ORTHO05D001157 5.3e-07 57.8 72 40.3
Ciclev10030924m.g Citrus clementina HOM05D001331 ORTHO05D001157 5.3e-07 57.8 73 39.7
MBI01_g15754_MAGBIO Magnolia biondii HOM05D001331 ORTHO05D001157 5.3e-07 57.8 69 36.2
TPR.G22749 Trifolium pratense HOM05D001331 ORTHO05D001157 5.3e-07 57.8 72 38.9
Ah.01g020180 Amaranthus hybridus HOM05D001331 ORTHO05D001157 6.9e-07 57.4 70 44.3
BcaB08g36861 Brassica carinata HOM05D001331 ORTHO05D001157 6.9e-07 57.4 72 41.7
BcaC04g18906 Brassica carinata HOM05D001331 ORTHO05D001157 6.9e-07 57.4 72 41.7
BcaNung02228 Brassica carinata HOM05D001331 ORTHO05D001157 6.9e-07 57.4 72 41.7
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 6.9e-07 57.4 72 41.7
BolC9t58913H Brassica oleracea HOM05D001331 ORTHO05D001157 6.9e-07 57.4 72 41.7
BraA03t10092Z Brassica rapa HOM05D001331 ORTHO05D001157 6.9e-07 57.4 72 41.7
BraA10t44346Z Brassica rapa HOM05D001331 ORTHO05D001157 6.9e-07 57.4 72 41.7
Thhalv10012533m.g Eutrema salsugineum HOM05D001331 ORTHO05D001157 6.9e-07 57.4 72 40.3
AT5G16270 Arabidopsis thaliana HOM05D001331 ORTHO05D001157 9.0e-07 57.0 72 40.3
AL6G27160 Arabidopsis lyrata HOM05D001331 ORTHO05D001157 1.2e-06 56.6 72 40.3
Nitab4.5_0002887g0130 Nicotiana tabacum HOM05D001331 ORTHO05D001157 1.2e-06 56.6 61 42.6
Oeu013649.1 Olea europaea HOM05D001331 ORTHO05D001157 1.2e-06 56.6 68 45.6
EL10Ac5g12161 Beta vulgaris HOM05D001331 ORTHO05D001157 1.5e-06 56.2 68 39.7
BcaB01g04995 Brassica carinata HOM05D001331 ORTHO05D001157 1.5e-06 56.2 72 41.7
A03p07640 Brassica napus HOM05D001331 ORTHO05D001157 1.5e-06 56.2 72 41.7
BraA02t05316Z Brassica rapa HOM05D001331 ORTHO05D001157 1.5e-06 56.2 72 40.3
CARHR197040 Cardamine hirsuta HOM05D001331 ORTHO05D001157 1.5e-06 56.2 72 40.3
Sp6g27890 Schrenkiella parvula HOM05D001331 ORTHO05D001157 1.5e-06 56.2 72 41.7
BcaC03g18483 Brassica carinata HOM05D001331 ORTHO05D001157 2.0e-06 55.8 72 40.3
C02p08240 Brassica napus HOM05D001331 ORTHO05D001157 2.0e-06 55.8 72 40.3
Carub.0006s1446 Capsella rubella HOM05D001331 ORTHO05D001157 2.0e-06 55.8 72 38.9
CBR_g33983 Chara braunii HOM05D001331 ORTHO05D001157 2.0e-06 55.8 55 41.8
Eucgr.J01249 Eucalyptus grandis HOM05D001331 ORTHO05D001157 2.0e-06 55.8 77 39.0
Lj1g0022047 Lotus japonicus HOM05D001331 ORTHO05D001157 2.0e-06 55.8 68 39.7
SEGI_22703 Sequoiadendron giganteum HOM05D001331 ORTHO05D001157 2.0e-06 55.8 68 38.2
CDE02G1510 Ceratophyllum demersum HOM05D001331 ORTHO05D001157 2.6e-06 55.5 72 38.9
ClCG04G000290 Citrullus lanatus HOM05D001331 ORTHO05D001157 2.6e-06 55.5 70 38.6
Phvul.008G051500 Phaseolus vulgaris HOM05D001331 ORTHO05D001157 2.6e-06 55.5 68 41.2
Ah.06g195190 Amaranthus hybridus HOM05D001331 ORTHO05D001157 3.4e-06 55.1 68 39.7
MBI11_g38640_MAGBIO Magnolia biondii HOM05D001331 ORTHO05D001157 3.4e-06 55.1 69 43.5
Pp3c6_2600 Physcomitrium patens HOM05D001331 ORTHO05D001157 3.4e-06 55.1 42 59.5
CSS0037703 Camellia sinensis var. sinensis HOM05D001331 ORTHO05D001157 5.8e-06 54.3 72 38.9
MBI04_g27129_MAGBIO Magnolia biondii HOM05D001331 ORTHO05D001157 5.8e-06 54.3 73 35.6
Nn1g09520 Nelumbo nucifera HOM05D001331 ORTHO05D001157 5.8e-06 54.3 72 38.9
THA.LOC104827169 Tarenaya hassleriana HOM05D001331 ORTHO05D001157 5.8e-06 54.3 72 38.9
EL10Ac9g21830 Beta vulgaris HOM05D001331 ORTHO05D001157 7.6e-06 53.9 65 43.1
Carub.0006s3326 Capsella rubella HOM05D001331 ORTHO05D001157 7.6e-06 53.9 69 37.7
Medtr7g080575 Medicago truncatula HOM05D001331 ORTHO05D001157 7.6e-06 53.9 72 37.5
Pp3c6_2850 Physcomitrium patens HOM05D001331 ORTHO05D001157 7.6e-06 53.9 42 59.5
Rhsim09G0127700 Rhododendron simsii HOM05D001331 ORTHO05D001157 7.6e-06 53.9 66 39.4
RhsimUnG0038200 Rhododendron simsii HOM05D000002 ORTHO05D000047 7.6e-06 53.9 66 39.4
EL10Ac4g10033 Beta vulgaris HOM05D001331 ORTHO05D001157 9.9e-06 53.5 68 39.7
Lalb_Chr01g0015201 Lupinus albus HOM05D001331 ORTHO05D001157 9.9e-06 53.5 73 38.4
THA.LOC104802428 Tarenaya hassleriana HOM05D001331 ORTHO05D001157 9.9e-06 53.5 72 40.3


User provided reference genes

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