Gene: AT5G40840

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G40840
  • Transcript Identifier AT5G40840.2
  • Gene Type Coding gene
  • Location Chr5 : 16359611-16363722 : negative

Gene Family Information

  • ID HOM05D001331
  • #Genes/#Species 472/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G40840.2
  • symbol SYN2
  • uniprot Q9FQ20

Descriptions

  • Description Rad21/Rec8-like family protein
  • Computational description SYN2; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: sister chromatid cohesion 1 protein 4 (TAIR:AT5G16270.1); Has 1217 Blast hits to 955 proteins in 245 species: Archae - 0; Bacteria - 80; Metazoa - 480; Fungi - 224; Plants - 240; Viruses - 3; Other Eukaryotes - 190 (source: NCBI BLink).
  • Computational description SYN2; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: sister chromatid cohesion 1 protein 4 (TAIR:AT5G16270.1); Has 1194 Blast hits to 931 proteins in 243 species: Archae - 0; Bacteria - 76; Metazoa - 473; Fungi - 219; Plants - 243; Viruses - 3; Other Eukaryotes - 180 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1990414
IBA
Gene Ontologyreplication-born double-strand break repair via sister chromatid exchange1
GO:0007062
IEA
Gene Ontologysister chromatid cohesion
GO:0007062
IEA
InterProsister chromatid cohesion
GO:0051301
IEA
GOA Databasecell division
GO:0007059
IEA
GOA Databasechromosome segregation
GO:0007049
IEA
GOA Databasecell cycle
GO:0007064
IBA
Gene Ontologymitotic sister chromatid cohesion1
GO:0007130
IBA
Gene Ontologysynaptonemal complex assembly1
GO:0006302
IMP
Gene Ontologydouble-strand break repair2
GO:0000278
IEP
Gene Ontologymitotic cell cycle3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003682
IBA
Gene Ontologychromatin binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008278
IEA
Gene Ontologycohesin complex
GO:0008278
IEA
InterProcohesin complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISS, ISM
Gene Ontologynucleus3
GO:0034990
IBA
Gene Ontologynuclear mitotic cohesin complex1
GO:0034991
IBA
Gene Ontologynuclear meiotic cohesin complex1
GO:0000795
IBA
Gene Ontologysynaptonemal complex1
GO:0000798
ISS
Gene Ontologynuclear cohesin complex3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023093 ScpA-like, C-terminal
IPR006909 Rad21/Rec8-like protein, C-terminal, eukaryotic
IPR006910 Rad21/Rec8-like protein, N-terminal
IPR036390 Winged helix DNA-binding domain superfamily
IPR039781 Rad21/Rec8-like protein
Mapman id Description
13.3.4.1.3 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.mitotic-specific Kleisin-type component SCC1