Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1307700 Malus domestica HOM05D003872 ORTHO05D004592 1.1e-57 226.5 116 100.0
MD07G1308100 Malus domestica HOM05D003872 ORTHO05D004592 8.4e-55 216.9 109 100.0
MD01G1235300 Malus domestica HOM05D003872 ORTHO05D004592 3.5e-53 211.5 109 96.3
QL09p024519 Quercus lobata HOM05D003872 ORTHO05D004592 1.3e-52 209.5 109 95.4
Prupe.2G325300 Prunus persica HOM05D003872 ORTHO05D004592 2.3e-52 208.8 109 94.5
Cfa015874 Carpinus fangiana HOM05D003872 ORTHO05D004592 1.1e-51 206.5 109 93.6
Haze_00615 Corylus avellana HOM05D003872 ORTHO05D004592 1.1e-51 206.5 109 93.6
Peaxi162Scf00745g00863 Petunia axillaris HOM05D003872 ORTHO05D004592 1.1e-51 206.5 109 93.6
Dinv17262 Davidia involucrata HOM05D003872 ORTHO05D004592 5.7e-51 204.1 109 92.7
Nitab4.5_0014944g0010 Nicotiana tabacum HOM05D003872 ORTHO05D004592 7.4e-51 203.8 108 92.6
FvH4_7g33880 Fragaria vesca HOM05D003872 ORTHO05D004592 9.7e-51 203.4 109 89.0
Thecc.09G264400 Theobroma cacao HOM05D003872 ORTHO05D004592 9.7e-51 203.4 109 92.7
CANSAT56G1448 Cannabis sativa HOM05D003872 ORTHO05D004592 1.3e-50 203.0 109 92.7
COL.COLO4_25305 Corchorus olitorius HOM05D003872 ORTHO05D004592 1.3e-50 203.0 109 91.7
CSS0006998 Camellia sinensis var. sinensis HOM05D003872 ORTHO05D004592 2.2e-50 202.2 109 91.7
Manes.08G162800 Manihot esculenta HOM05D003872 ORTHO05D004592 2.2e-50 202.2 109 90.8
Phvul.002G039400 Phaseolus vulgaris HOM05D003872 ORTHO05D004592 2.2e-50 202.2 109 89.0
Potri.013G088400 Populus trichocarpa HOM05D003872 ORTHO05D004592 2.2e-50 202.2 109 90.8
Rhsim09G0212400 Rhododendron simsii HOM05D003872 ORTHO05D004592 2.2e-50 202.2 109 91.7
Gohir.D09G101600 Gossypium hirsutum HOM05D003872 ORTHO05D004592 2.8e-50 201.8 109 91.7
Gorai.006G119000 Gossypium raimondii HOM05D003872 ORTHO05D004592 2.8e-50 201.8 109 91.7
arahy.Tifrunner.gnm1.ann1.7I89AX Arachis hypogaea HOM05D003872 ORTHO05D004592 3.7e-50 201.4 109 89.9
arahy.Tifrunner.gnm1.ann1.88Y1ZI Arachis hypogaea HOM05D003872 ORTHO05D004592 3.7e-50 201.4 109 89.9
Cc02_g00340 Coffea canephora HOM05D003872 ORTHO05D004592 3.7e-50 201.4 109 90.8
Glyma.11G011300 Glycine max HOM05D003872 ORTHO05D004592 3.7e-50 201.4 109 89.0
PSO063G1286 Papaver somniferum HOM05D003872 ORTHO05D004592 3.7e-50 201.4 108 91.7
PSO782G2664 Papaver somniferum HOM05D003872 ORTHO05D004592 3.7e-50 201.4 108 91.7
Solyc03g096930.4 Solanum lycopersicum HOM05D003872 ORTHO05D004592 3.7e-50 201.4 109 89.9
Sopen03g027680 Solanum pennellii HOM05D003872 ORTHO05D004592 3.7e-50 201.4 109 89.9
HanXRQChr07g0191391 Helianthus annuus HOM05D003872 ORTHO05D004592 4.8e-50 201.1 109 90.8
TWI34G1659 Tripterygium wilfordii HOM05D003872 ORTHO05D004592 4.8e-50 201.1 109 91.7
GSVIVG01024416001 Vitis vinifera HOM05D003872 ORTHO05D004592 4.8e-50 201.1 115 87.8
Gohir.A09G104900 Gossypium hirsutum HOM05D003872 ORTHO05D004592 6.3e-50 200.7 109 90.8
HanXRQChr02g0048341 Helianthus annuus HOM05D003872 ORTHO05D004592 6.3e-50 200.7 108 91.7
Lj3A888T24 Lonicera japonica HOM05D003872 ORTHO05D004592 6.3e-50 200.7 109 89.9
Lj6g0012287 Lotus japonicus HOM05D003872 ORTHO05D004592 6.3e-50 200.7 109 89.0
LjContig00222g0027729 Lotus japonicus HOM05D003872 ORTHO05D004592 6.3e-50 200.7 109 89.0
Aqoxy5G00370 Aquilegia oxysepala HOM05D003872 ORTHO05D004592 8.2e-50 200.3 109 89.9
Duzib150G0049 Durio zibethinus HOM05D003872 ORTHO05D004592 8.2e-50 200.3 109 90.8
Lsat_1_v5_gn_6_9400 Lactuca sativa HOM05D003872 ORTHO05D004592 8.2e-50 200.3 109 92.7
THA.LOC104821768 Tarenaya hassleriana HOM05D003872 ORTHO05D004592 8.2e-50 200.3 109 89.0
Lalb_Chr19g0139931 Lupinus albus HOM05D003872 ORTHO05D004592 1.1e-49 199.9 109 89.0
Nitab4.5_0000021g0440 Nicotiana tabacum HOM05D003872 ORTHO05D004592 1.1e-49 199.9 108 89.8
VMungo1215G1922 Vigna mungo HOM05D003872 ORTHO05D004592 1.1e-49 199.9 109 88.1
PGR142G0219 Punica granatum HOM05D003872 ORTHO05D004592 1.4e-49 199.5 109 90.8
Sed0014695 Sechium edule HOM05D003872 ORTHO05D004592 1.4e-49 199.5 109 89.9
Atru.chr12.1980 Acer truncatum HOM05D003872 ORTHO05D004592 1.8e-49 199.1 109 89.9
Lalb_Chr09g0320231 Lupinus albus HOM05D003872 ORTHO05D004592 1.8e-49 199.1 109 88.1
Manes.09G124700 Manihot esculenta HOM05D003872 ORTHO05D004592 1.8e-49 199.1 109 88.1
Peaxi162Scf00815g00355 Petunia axillaris HOM05D003872 ORTHO05D004592 1.8e-49 199.1 108 90.7
TAR374G1229 Trochodendron aralioides HOM05D003872 ORTHO05D004592 1.8e-49 199.1 108 89.8
Duzib170G1103 Durio zibethinus HOM05D003872 ORTHO05D004592 2.4e-49 198.7 109 89.9
Eucgr.K00091 Eucalyptus grandis HOM05D003872 ORTHO05D004592 2.4e-49 198.7 109 90.8
Nn3g19322 Nelumbo nucifera HOM05D003872 ORTHO05D004592 2.4e-49 198.7 109 89.9
Psat2g188840 Pisum sativum HOM05D003872 ORTHO05D004592 2.4e-49 198.7 109 88.1
Sed0012852 Sechium edule HOM05D003872 ORTHO05D004592 2.4e-49 198.7 109 89.0
ClCG10G009140 Citrullus lanatus HOM05D003872 ORTHO05D004592 3.1e-49 198.4 109 89.0
MELO3C004334.2 Cucumis melo HOM05D003872 ORTHO05D004592 3.1e-49 198.4 109 89.0
CsaV3_2G004570 Cucumis sativus L. HOM05D003872 ORTHO05D004592 3.1e-49 198.4 109 89.0
ECA233G5164 Erigeron canadensis HOM05D003872 ORTHO05D004592 4.1e-49 198.0 109 90.8
RcHm_v2.0_Chr1g0384051 Rosa chinensis HOM05D003872 ORTHO05D004592 4.1e-49 198.0 109 87.2
TPR.G37898 Trifolium pratense HOM05D003872 ORTHO05D000315 4.1e-49 198.0 109 89.0
Medtr4g077800 Medicago truncatula HOM05D003872 ORTHO05D004592 5.3e-49 197.6 109 86.2
Nn1g01951 Nelumbo nucifera HOM05D003872 ORTHO05D004592 5.3e-49 197.6 109 87.2
Ca_24443_v3 Cicer arietinum L. HOM05D003872 ORTHO05D004592 6.9e-49 197.2 109 89.0
Glyma.01G228500 Glycine max HOM05D003872 ORTHO05D004592 6.9e-49 197.2 109 87.2
Potri.019G051500 Populus trichocarpa HOM05D003872 ORTHO05D004592 6.9e-49 197.2 109 88.1
Sabra19G0057100 Salix brachista HOM05D003872 ORTHO05D004592 6.9e-49 197.2 109 88.1
Hund09783 Selenicereus undatus HOM05D003872 ORTHO05D004592 6.9e-49 197.2 109 89.9
MSTRG.2325 Avicennia marina HOM05D003872 ORTHO05D004592 9.0e-49 196.8 108 88.0
CiPaw.06G019100 Carya illinoinensis HOM05D003872 ORTHO05D004592 9.0e-49 196.8 109 87.2
Migut.E00064 Erythranthe guttata HOM05D003872 ORTHO05D004592 9.0e-49 196.8 108 88.0
DCAR_020405 Daucus carota HOM05D003872 ORTHO05D004592 1.2e-48 196.4 109 88.1
vmacro10187 Vaccinium macrocarpon HOM05D003872 ORTHO05D004592 1.2e-48 196.4 109 89.0
Ciclev10019553m.g Citrus clementina HOM05D003872 ORTHO05D004592 1.5e-48 196.1 109 88.1
Dinv29163 Davidia involucrata HOM05D003872 ORTHO05D004592 1.5e-48 196.1 108 88.9
FAN03G3493 Fragaria x ananassa HOM05D003872 ORTHO05D004592 1.5e-48 196.1 109 86.2
Oeu027883.1 Olea europaea HOM05D003872 ORTHO05D004592 1.5e-48 196.1 109 87.2
AL3G28740 Arabidopsis lyrata HOM05D003872 ORTHO05D004592 2.0e-48 195.7 109 86.2
AT3G16090 Arabidopsis thaliana HOM05D003872 ORTHO05D004592 2.0e-48 195.7 109 86.2
Gohir.D08G017800 Gossypium hirsutum HOM05D003872 ORTHO05D004592 2.0e-48 195.7 109 89.0
Lalb_Chr01g0000961 Lupinus albus HOM05D003872 ORTHO05D004592 2.0e-48 195.7 108 88.0
Psat7g171960 Pisum sativum HOM05D003872 ORTHO05D004592 2.6e-48 195.3 109 86.2
SGA_v2.0_scaffold287G47149 Striga asiatica HOM05D003872 ORTHO05D004592 2.6e-48 195.3 108 88.9
Carub.0003s1582 Capsella rubella HOM05D003872 ORTHO05D004592 3.4e-48 194.9 109 85.3
Thhalv10020585m.g Eutrema salsugineum HOM05D003872 ORTHO05D004592 3.4e-48 194.9 109 85.3
MSTRG.13439 Avicennia marina HOM05D003872 ORTHO05D004592 4.5e-48 194.5 108 87.0
EL10Ac3g05086 Beta vulgaris HOM05D003872 ORTHO05D004592 4.5e-48 194.5 108 88.9
Gohir.A08G007700 Gossypium hirsutum HOM05D003872 ORTHO05D004592 5.9e-48 194.1 109 88.1
Rhsim03G0221100 Rhododendron simsii HOM05D002636 ORTHO05D003490 5.9e-48 194.1 108 88.0
Oeu017103.1 Olea europaea HOM05D003872 ORTHO05D004592 7.7e-48 193.7 109 87.2
Aa31LG8G3240 Aethionema arabicum HOM05D003872 ORTHO05D004592 1.0e-47 193.4 109 83.5
ATR0743G218 Amborella trichopoda HOM05D003872 ORTHO05D004592 1.0e-47 193.4 109 88.1
A01p38010 Brassica napus HOM05D003872 ORTHO05D004592 1.0e-47 193.4 109 84.4
C01p48220 Brassica napus HOM05D003872 ORTHO05D004592 1.0e-47 193.4 109 84.4
BolC1t04785H Brassica oleracea HOM05D003872 ORTHO05D004592 1.0e-47 193.4 109 84.4
BraA01t03860Z Brassica rapa HOM05D003872 ORTHO05D004592 1.0e-47 193.4 109 84.4
CARHR091250 Cardamine hirsuta HOM05D003872 ORTHO05D004592 1.0e-47 193.4 107 86.0
Medtr5g007710 Medicago truncatula HOM05D003872 ORTHO05D004592 1.0e-47 193.4 109 86.2
Sp3g14440 Schrenkiella parvula HOM05D003872 ORTHO05D004592 1.0e-47 193.4 107 86.0
unitig_62.g23692 Utricularia gibba HOM05D003872 ORTHO05D004592 1.3e-47 193.0 109 83.5
THA.LOC104823803 Tarenaya hassleriana HOM05D003872 ORTHO05D004592 1.7e-47 192.6 107 86.0
Ah.04g156820 Amaranthus hybridus HOM05D003872 ORTHO05D004592 2.2e-47 192.2 109 89.0
MBI04_g36030_MAGBIO Magnolia biondii HOM05D003872 ORTHO05D004592 2.2e-47 192.2 109 84.4
CARHR056530 Cardamine hirsuta HOM05D003872 ORTHO05D004592 2.9e-47 191.8 109 84.4
Ca_04923_v3 Cicer arietinum L. HOM05D003872 ORTHO05D002695 2.9e-47 191.8 109 86.2
FAN10G4058 Fragaria x ananassa HOM05D003872 ORTHO05D004592 2.9e-47 191.8 107 85.0
AUR62005901 Chenopodium quinoa HOM05D003872 ORTHO05D004592 3.8e-47 191.4 108 87.0
AUR62028169 Chenopodium quinoa HOM05D003872 ORTHO05D004592 3.8e-47 191.4 108 87.0
BcaB04g20876 Brassica carinata HOM05D003872 ORTHO05D004592 6.5e-47 190.7 107 84.1
Gorai.004G012200 Gossypium raimondii HOM05D003872 ORTHO05D004592 6.5e-47 190.7 109 87.2
AT1G65040 Arabidopsis thaliana HOM05D003872 ORTHO05D004592 1.1e-46 189.9 109 84.4
Nitab4.5_0000115g0380 Nicotiana tabacum HOM05D003872 ORTHO05D004592 1.4e-46 189.5 108 85.2
Thhalv10022466m.g Eutrema salsugineum HOM05D003872 ORTHO05D004592 2.5e-46 188.7 109 83.5
Sc25g0001200 Simmondsia chinensis HOM05D003872 ORTHO05D004592 2.5e-46 188.7 109 86.2
PGSC0003DMG402027033 Solanum tuberosum HOM05D003872 ORTHO05D004592 2.5e-46 188.7 108 84.3
SGA_v2.0_scaffold36G14425 Striga asiatica HOM05D003872 ORTHO05D004592 3.2e-46 188.3 109 84.4
Sp5g19570 Schrenkiella parvula HOM05D003872 ORTHO05D004592 5.5e-46 187.6 109 83.5
Solyc06g072790.3 Solanum lycopersicum HOM05D003872 ORTHO05D004592 5.5e-46 187.6 108 84.3
A02p12990 Brassica napus HOM05D003872 ORTHO05D004592 7.2e-46 187.2 109 81.7
C02p21110 Brassica napus HOM05D003872 ORTHO05D004592 7.2e-46 187.2 109 81.7
Sopen06g029170 Solanum pennellii HOM05D003872 ORTHO05D004592 9.4e-46 186.8 108 83.3
AL2G19680 Arabidopsis lyrata HOM05D003872 ORTHO05D004592 1.2e-45 186.4 108 83.3
Carub.0002s1027 Capsella rubella HOM05D003872 ORTHO05D004592 1.2e-45 186.4 109 82.6
Nitab4.5_0002193g0030 Nicotiana tabacum HOM05D003872 ORTHO05D004592 1.2e-45 186.4 108 84.3
BcaC03g14671 Brassica carinata HOM05D003872 ORTHO05D004592 1.6e-45 186.0 109 80.7
BolC2t08251H Brassica oleracea HOM05D003872 ORTHO05D004592 1.6e-45 186.0 109 80.7
Os06g0301000 Oryza sativa ssp. japonica HOM05D003872 ORTHO05D004592 1.6e-45 186.0 109 83.5
Migut.L01227 Erythranthe guttata HOM05D003872 ORTHO05D004592 2.1e-45 185.7 108 83.3
BraA02t06355Z Brassica rapa HOM05D003872 ORTHO05D004592 2.7e-45 185.3 109 80.7
BcaB05g25320 Brassica carinata HOM05D003872 ORTHO05D004592 3.6e-45 184.9 109 80.7
CDE03G0110 Ceratophyllum demersum HOM05D003872 ORTHO05D004592 4.6e-45 184.5 109 79.8
CDE06G2786 Ceratophyllum demersum HOM05D003872 ORTHO05D004592 6.1e-45 184.1 109 79.8
RcHm_v2.0_Chr1g0384081 Rosa chinensis HOM05D003872 ORTHO05D004592 6.1e-45 184.1 110 82.7
unitig_52.g17166 Utricularia gibba HOM05D003872 ORTHO05D004592 6.1e-45 184.1 109 78.9
HPP92_015263 Vanilla planifolia HOM05D003872 ORTHO05D004592 6.1e-45 184.1 107 82.2
Aa31LG2G2240 Aethionema arabicum HOM05D003872 ORTHO05D004592 7.9e-45 183.7 115 78.3
Zm00001eb197180 Zea mays HOM05D003872 ORTHO05D004592 7.9e-45 183.7 108 83.3
arahy.Tifrunner.gnm1.ann1.D4CCQ1 Arachis hypogaea HOM05D003872 ORTHO05D004592 2.3e-44 182.2 109 81.7
SEGI_15145 Sequoiadendron giganteum HOM05D003872 ORTHO05D004592 2.3e-44 182.2 107 84.1
FAN01G2295 Fragaria x ananassa HOM05D003872 ORTHO05D004592 6.7e-44 180.6 109 81.7
CSS0003280 Camellia sinensis var. sinensis HOM05D003872 ORTHO05D004592 1.1e-43 179.9 115 78.3
arahy.Tifrunner.gnm1.ann1.N502YT Arachis hypogaea HOM05D003872 ORTHO05D004592 1.7e-42 176.0 109 79.8
Mapoly0001s0157 Marchantia polymorpha HOM05D003872 ORTHO05D004592 3.1e-41 171.8 107 76.6
Pp3c16_2890 Physcomitrium patens HOM05D003872 ORTHO05D004592 9.1e-41 170.2 107 76.6
Cpa.g.sc39.64 Carica papaya HOM05D003872 ORTHO05D004592 1.3e-39 166.4 88 90.9
AagrBONN_evm.TU.Sc2ySwM_362.2448 Anthoceros agrestis HOM05D003872 ORTHO05D004592 1.7e-39 166.0 114 70.2
SMO116G0390 Selaginella moellendorffii HOM05D003872 ORTHO05D004592 2.1e-37 159.1 107 72.9
Zm00001eb092590 Zea mays HOM05D003872 ORTHO05D004592 6.3e-34 147.5 88 80.7
CBR_g8650 Chara braunii HOM05D003872 ORTHO05D004592 1.8e-33 146.0 113 63.7
HanXRQChr03g0062091 Helianthus annuus HOM05D003872 ORTHO05D004592 1.8e-33 146.0 96 76.0
BcaB05g24075 Brassica carinata HOM05D003872 ORTHO05D004592 2.4e-33 145.6 109 67.0
Mapoly0075s0067 Marchantia polymorpha HOM05D003872 ORTHO05D004592 4.5e-32 141.4 107 66.4
PRCOL_00004964 Prasinoderma coloniale HOM05D003872 ORTHO05D004592 8.5e-31 137.1 115 53.9
MCO15G602 Micromonas commoda HOM05D003872 ORTHO05D004592 1.2e-29 133.3 115 53.0
HanXRQChr03g0062061 Helianthus annuus HOM05D003872 ORTHO05D004592 4.4e-27 124.8 87 74.7
Zm00001eb410280 Zea mays HOM05D003872 ORTHO05D004592 2.8e-26 122.1 114 58.8
Cre04.g217922 Chlamydomonas reinhardtii HOM05D003872 ORTHO05D004592 5.5e-22 107.8 113 47.8
MD01G1235000 Malus domestica HOM05D003872 ORTHO05D004592 4.0e-20 101.7 50 96.0
Duzib168G0937 Durio zibethinus HOM05D003872 ORTHO05D004592 4.4e-19 98.2 49 89.8
vmacro06507 Vaccinium macrocarpon HOM05D003872 ORTHO05D004592 1.4e-17 93.2 57 75.4
Zm00001eb434600 Zea mays HOM05D003872 ORTHO05D004592 2.7e-08 62.4 108 38.0
Zm00001eb374980 Zea mays HOM05D003872 ORTHO05D004592 5.9e-08 61.2 107 38.3


User provided reference genes

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