Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 1.9e-119 432.6 226 100.0
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 6.8e-93 344.4 226 81.4
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 2.5e-87 325.9 227 77.1
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 5.8e-84 314.7 226 75.2
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.6e-81 306.6 221 75.1
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 2.7e-81 305.8 225 74.7
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 3.3e-79 298.9 223 70.4
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 4.8e-78 295.0 223 70.0
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 5.8e-76 288.1 223 66.8
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 4.9e-75 285.0 223 66.8
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.9e-74 283.1 224 67.4
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 5.4e-74 281.6 223 66.4
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 2.1e-73 279.6 223 66.8
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.5e-73 278.9 223 66.4
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 6.0e-73 278.1 224 67.4
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 1.3e-72 276.9 223 66.4
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 1.7e-72 276.6 223 68.2
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 3.0e-72 275.8 223 66.8
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 8.7e-72 274.2 223 66.4
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.7e-72 274.2 223 65.5
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 3.3e-71 272.3 223 65.0
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.3e-71 271.2 223 64.6
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.3e-71 271.2 223 64.6
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.3e-71 271.2 223 64.6
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 7.3e-71 271.2 223 64.6
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-70 270.4 223 64.6
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.8e-70 269.2 223 64.1
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.8e-70 269.2 223 64.1
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 4.8e-70 268.5 224 65.6
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.2e-70 268.1 223 64.1
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 8.1e-70 267.7 223 64.1
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-69 267.3 223 63.7
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 5.3e-69 265.0 223 63.7
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.2e-68 263.8 223 65.5
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.6e-68 262.7 223 62.8
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 2.6e-68 262.7 210 66.7
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 3.8e-67 258.8 219 67.1
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 1.9e-66 256.5 226 61.5
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 4.2e-66 255.4 223 62.3
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 5.5e-66 255.0 225 61.3
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 7.1e-66 254.6 224 62.1
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 2.1e-65 253.1 224 61.2
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 2.1e-65 253.1 224 61.6
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 3.5e-65 252.3 225 62.2
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 3.5e-65 252.3 226 62.4
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 7.9e-65 251.1 224 62.1
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.0e-64 250.8 224 62.1
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.8e-64 250.0 224 61.6
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 3.9e-64 248.8 225 59.6
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 5.1e-64 248.4 223 61.0
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 5.1e-64 248.4 225 58.7
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 6.7e-64 248.1 225 59.1
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 8.7e-64 247.7 226 60.2
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 1.5e-63 246.9 224 60.3
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 1.5e-63 246.9 223 61.9
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 1.9e-63 246.5 226 59.3
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 2.5e-63 246.1 224 59.8
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 2.5e-63 246.1 224 60.7
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 4.3e-63 245.4 224 60.3
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 9.6e-63 244.2 224 58.9
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 9.6e-63 244.2 224 60.3
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 9.6e-63 244.2 224 60.3
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 1.3e-62 243.8 225 57.8
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 1.6e-62 243.4 224 59.4
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 2.1e-62 243.0 224 59.4
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 2.1e-62 243.0 224 59.8
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 2.1e-62 243.0 224 59.8
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 3.7e-62 242.3 224 60.3
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 6.2e-62 241.5 223 59.6
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 1.1e-61 240.7 224 58.9
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.1e-61 240.7 224 59.4
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.4e-61 240.4 226 58.8
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 1.8e-61 240.0 224 58.9
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 3.1e-61 239.2 250 55.6
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 6.9e-61 238.0 225 62.2
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 9.0e-61 237.7 222 59.5
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 3.4e-60 235.7 232 57.8
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 4.5e-60 235.3 223 58.3
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 5.8e-60 235.0 223 59.2
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 5.8e-60 235.0 224 59.4
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 5.8e-60 235.0 223 60.1
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 7.6e-60 234.6 224 57.1
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 1.7e-59 233.4 223 59.2
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 2.9e-59 232.6 238 56.7
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 4.9e-59 231.9 223 60.5
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 8.4e-59 231.1 225 58.7
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 1.9e-58 229.9 226 59.3
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.2e-57 227.3 221 57.9
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 2.7e-57 226.1 233 51.9
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 6.0e-57 224.9 214 59.3
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 1.8e-56 223.4 226 58.0
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.3e-56 223.0 199 62.8
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 3.0e-56 222.6 223 59.6
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 6.7e-56 221.5 225 57.8
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.7e-56 221.1 205 60.0
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.9e-55 219.9 223 56.1
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 4.3e-55 218.8 223 57.8
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 8.2e-54 214.5 240 54.6
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.1e-53 214.2 232 53.0
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 1.8e-53 213.4 185 65.4
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 2.4e-53 213.0 223 56.1
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 2.4e-53 213.0 229 54.1
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 1.2e-52 210.7 229 53.7
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 5.8e-52 208.4 223 56.1
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.0e-51 207.6 223 54.3
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.0e-51 207.6 216 55.6
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 1.0e-51 207.6 235 53.6
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.9e-51 206.1 218 55.5
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 5.0e-51 205.3 197 56.9
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-50 204.1 170 64.7
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.4e-50 203.8 269 48.0
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 7.2e-50 201.4 278 47.1
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 1.2e-49 200.7 223 53.8
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 1.3e-48 197.2 210 55.2
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 1.3e-48 197.2 259 48.3
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 5.1e-48 195.3 195 60.0
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 5.1e-48 195.3 195 55.4
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 6.7e-48 194.9 347 38.6
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 3.7e-46 189.1 137 75.9
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.1e-45 185.7 159 62.9
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.3e-43 180.6 197 56.3
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 2.9e-43 179.5 252 45.2
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.1e-42 177.6 216 52.8
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 1.6e-41 173.7 150 66.0
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 1.6e-41 173.7 201 52.2
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 4.3e-39 165.6 172 54.7
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-38 164.1 149 61.7
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 1.3e-35 154.1 143 62.2
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.9e-34 150.2 138 61.6
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 3.2e-34 149.4 203 47.8
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 8.8e-32 141.4 167 51.5
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 9.7e-31 137.9 148 54.7
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 3.7e-30 136.0 159 54.7
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 4.1e-29 132.5 173 51.4
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 7.7e-28 128.3 100 71.0
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.7e-27 127.1 97 63.9
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 1.0e-24 117.9 192 40.1
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 3.0e-24 116.3 179 39.7
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 4.0e-24 115.9 199 36.7
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 1.8e-21 107.1 158 43.0
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 2.4e-21 106.7 196 36.7
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 1.2e-20 104.4 120 52.5
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 5.2e-16 89.0 94 54.3
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 1.2e-15 87.8 155 42.6
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 5.7e-15 85.5 94 52.1
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.7e-14 84.0 58 65.5
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 1.1e-13 81.3 94 50.0
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 4.5e-12 75.9 50 76.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.1e-09 67.0 63 55.6
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 6.8e-08 62.0 116 37.9
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 1.3e-06 57.8 172 29.1


User provided reference genes

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