Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 0.0e+00 2618.6 1389 100.0
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 0.0e+00 1926.8 1388 73.8
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 0.0e+00 1555.0 1428 61.7
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 0.0e+00 1538.5 1438 60.6
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1505.3 1435 59.9
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1498.8 1473 58.8
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1486.1 1435 59.7
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1471.8 1456 58.6
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 0.0e+00 1442.2 1371 59.8
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 0.0e+00 1341.6 1075 71.9
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 0.0e+00 1110.5 1419 49.8
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 0.0e+00 1097.4 1686 43.1
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.4e-310 1070.1 1009 61.5
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 4.8e-306 1055.0 1416 47.2
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 8.8e-300 1034.2 1699 41.6
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 3.2e-294 1015.8 1424 46.4
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 9.4e-294 1014.2 1491 43.3
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 4.9e-282 975.3 1685 40.7
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 8.3e-282 974.5 1413 45.2
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 2.5e-270 936.4 1691 40.0
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 3.1e-268 929.5 1612 40.0
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 2.1e-256 890.2 1729 37.2
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 1.7e-250 870.5 1401 42.4
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 5.6e-246 855.5 1521 39.7
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.9e-238 830.5 1796 35.0
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 2.4e-233 813.5 1741 35.4
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 9.3e-233 811.6 1420 41.1
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 1.3e-231 807.7 1501 38.8
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 1.3e-229 801.2 1768 34.6
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 4.0e-228 796.2 1681 36.5
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 4.9e-226 789.3 1615 37.6
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 1.6e-221 774.2 1690 34.6
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 9.0e-220 768.5 733 59.9
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 3.4e-219 766.5 1666 35.1
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 1.0e-218 765.0 1703 34.8
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 2.5e-217 760.4 1682 34.7
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 5.5e-217 759.2 1641 35.2
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 7.9e-216 755.4 1695 35.6
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 9.3e-209 731.9 1728 34.7
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 2.1e-208 730.7 729 56.4
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 2.3e-207 727.2 1415 36.4
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 6.7e-207 725.7 1414 37.2
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 7.4e-206 722.2 1627 36.3
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 1.7e-202 711.1 1611 34.7
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 7.4e-198 695.7 1731 32.6
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 3.7e-197 693.3 1701 34.9
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 6.9e-196 689.1 1417 37.0
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 2.0e-195 687.6 1724 32.8
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 4.7e-192 676.4 1172 39.8
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 2.6e-190 670.6 1247 38.7
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 1.1e-185 655.2 1171 39.2
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 2.5e-185 654.1 1758 32.3
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 8.0e-184 649.0 1351 36.6
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 8.0e-184 649.0 1439 38.1
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 1.5e-182 644.8 1709 32.5
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 2.6e-182 644.0 1695 32.6
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 2.8e-181 640.6 1718 31.1
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 4.8e-181 639.8 1683 32.4
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 3.5e-179 633.6 1308 36.3
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 5.9e-179 632.9 1697 32.4
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 8.5e-178 629.0 730 53.0
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 1.1e-177 628.6 1690 32.2
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.5e-177 628.2 740 50.8
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 4.2e-177 626.7 1691 31.3
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 2.1e-176 624.4 739 50.7
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 1.0e-175 622.1 1487 34.4
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 2.3e-175 620.9 1431 34.8
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 6.8e-175 619.4 1697 31.1
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 4.4e-174 616.7 1713 32.1
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 2.2e-173 614.4 1406 35.2
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 8.3e-173 612.5 1456 34.8
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 2.4e-172 610.9 1456 35.0
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 1.3e-170 605.1 1683 30.9
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 3.8e-170 603.6 1687 31.9
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 6.5e-170 602.8 1693 31.8
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 5.5e-169 599.7 1681 30.6
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 7.2e-169 599.4 1741 30.4
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 2.3e-167 594.3 1570 31.8
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 6.8e-167 592.8 1702 30.3
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 1.4e-164 585.1 1679 31.2
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 1.8e-164 584.7 1687 30.9
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 4.1e-164 583.6 1701 30.8
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.0e-162 576.6 514 61.9
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 3.6e-160 570.5 1687 30.6
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 1.4e-159 568.5 1709 31.0
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 5.4e-156 556.6 1771 29.6
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 7.0e-156 556.2 1489 30.9
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 3.5e-155 553.9 1751 29.6
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 6.0e-155 553.1 1216 35.9
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 7.8e-155 552.7 1715 30.0
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 8.6e-154 549.3 1508 31.0
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.3e-141 508.8 739 43.4
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 7.1e-140 503.1 682 44.0
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 1.1e-137 495.7 689 43.7
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 5.8e-118 430.3 297 78.5
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 2.2e-117 428.3 1243 31.9
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 1.0e-106 392.9 459 50.3
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 7.6e-102 376.7 811 35.8
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.4e-87 329.3 1106 28.8
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 6.1e-83 313.9 1404 26.6
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 3.9e-74 284.6 752 31.8
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 7.0e-71 273.9 738 31.4
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 3.3e-65 255.0 473 37.6
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.9e-60 239.2 811 28.4
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 2.7e-59 235.3 531 35.8
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 1.5e-57 229.6 203 59.1
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 8.0e-51 207.2 607 31.8
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 1.2e-49 203.4 1091 23.6
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 8.6e-45 187.2 147 66.0
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 7.5e-41 174.1 233 41.2
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 4.3e-36 158.3 233 37.3
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 4.4e-33 148.3 316 33.5
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 3.5e-30 138.7 233 36.5
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.0e-29 137.1 196 46.9
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 1.2e-27 130.2 214 41.6
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 1.8e-26 126.3 265 32.8
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 2.4e-23 115.9 213 41.3
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 5.4e-23 114.8 129 54.3
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 6.0e-22 111.3 168 48.2
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 1.9e-20 106.3 241 35.3
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.2e-19 103.6 95 61.1
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.4e-18 99.4 104 56.7
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 2.5e-12 79.3 238 30.3
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 2.8e-11 75.9 137 37.2
Ah.07g206970 Amaranthus hybridus HOM05D005579 ORTHO05D006775 5.8e-09 68.2 175 33.7
Lalb_Chr19g0130841 Lupinus albus HOM05D005579 ORTHO05D006775 9.9e-09 67.4 95 45.3
Oeu024225.1 Olea europaea HOM05D002251 ORTHO05D006775 3.8e-08 65.5 398 28.1
Medtr6g045353 Medicago truncatula HOM05D005579 ORTHO05D006775 1.4e-07 63.5 87 42.5
PSO339G5948 Papaver somniferum HOM05D007489 ORTHO05D008037 2.4e-07 62.8 279 26.2
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 1.2e-06 60.5 155 29.7
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 3.5e-06 58.9 144 28.5


User provided reference genes

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