Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1214300 Malus domestica HOM05D004669 ORTHO05D005767 6.6e-87 323.9 157 100.0
Potri.001G173500 Populus trichocarpa HOM05D004669 ORTHO05D005767 3.3e-70 268.5 144 89.6
FAN05G0230 Fragaria x ananassa HOM05D004669 ORTHO05D005767 5.6e-70 267.7 144 88.9
FvH4_6g30400 Fragaria vesca HOM05D004669 ORTHO05D005767 7.4e-70 267.3 144 88.2
FAN02G3057 Fragaria x ananassa HOM05D004669 ORTHO05D005767 9.6e-70 266.9 144 88.9
FAN09G4623 Fragaria x ananassa HOM05D004669 ORTHO05D005767 2.1e-69 265.8 144 88.2
FAN14G3011 Fragaria x ananassa HOM05D004669 ORTHO05D005767 2.1e-69 265.8 144 88.2
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 4.8e-69 264.6 144 88.2
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 8.2e-69 263.8 144 88.2
RcHm_v2.0_Chr2g0136751 Rosa chinensis HOM05D004669 ORTHO05D005767 1.1e-68 263.5 144 87.5
Aqoxy7G02078 Aquilegia oxysepala HOM05D004669 ORTHO05D005767 1.8e-68 262.7 144 86.8
Rhsim08G0216600 Rhododendron simsii HOM05D004669 ORTHO05D005767 4.0e-68 261.5 144 86.1
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 6.9e-68 260.8 144 86.8
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 6.9e-68 260.8 144 86.8
TAR636G0609 Trochodendron aralioides HOM05D004669 ORTHO05D005767 6.9e-68 260.8 144 86.8
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 9.0e-68 260.4 143 87.4
Ciclev10024861m.g Citrus clementina HOM05D004669 ORTHO05D005767 9.0e-68 260.4 144 86.1
TAR627G0296 Trochodendron aralioides HOM05D004669 ORTHO05D005767 1.5e-67 259.6 145 85.5
PSO675G6139 Papaver somniferum HOM05D004669 ORTHO05D005767 2.6e-67 258.8 144 84.7
COL.COLO4_12887 Corchorus olitorius HOM05D004669 ORTHO05D005767 3.4e-67 258.5 142 85.9
TWI12G0769 Tripterygium wilfordii HOM05D004669 ORTHO05D005767 1.3e-66 256.5 144 84.7
MD09G1221500 Malus domestica HOM05D004669 ORTHO05D005767 2.2e-66 255.8 146 87.7
Sc12g0008880 Simmondsia chinensis HOM05D004669 ORTHO05D005767 2.9e-66 255.4 144 84.0
ECA038G0001 Erigeron canadensis HOM05D004669 ORTHO05D005767 6.5e-66 254.2 144 85.4
ECA247G1145 Erigeron canadensis HOM05D004669 ORTHO05D005767 6.5e-66 254.2 144 85.4
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 1.4e-65 253.1 145 83.4
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 2.5e-65 252.3 144 84.7
EL10Ac9g21952 Beta vulgaris HOM05D004669 ORTHO05D005767 5.5e-65 251.1 143 83.2
SMO356G0696 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.2e-64 250.0 144 83.3
Gohir.A09G084900 Gossypium hirsutum HOM05D004669 ORTHO05D005767 2.7e-64 248.8 144 84.0
Gohir.D09G084800 Gossypium hirsutum HOM05D004669 ORTHO05D005767 6.0e-64 247.7 144 83.3
Gorai.006G100800 Gossypium raimondii HOM05D004669 ORTHO05D005767 6.0e-64 247.7 144 83.3
A08p31560 Brassica napus HOM05D004669 ORTHO05D005767 6.7e-63 244.2 144 79.9
BraA08t35078Z Brassica rapa HOM05D004669 ORTHO05D005767 6.7e-63 244.2 144 79.9
Zm00001eb293800 Zea mays HOM05D004669 ORTHO05D005767 6.7e-63 244.2 144 81.2
C08p17210 Brassica napus HOM05D004669 ORTHO05D005767 8.7e-63 243.8 144 79.9
BolC8t49350H Brassica oleracea HOM05D004669 ORTHO05D005767 8.7e-63 243.8 144 79.9
AT1G15440 Arabidopsis thaliana HOM05D004669 ORTHO05D005767 1.5e-62 243.0 144 79.9
BcaC07g38791 Brassica carinata HOM05D004669 ORTHO05D005767 1.5e-62 243.0 144 79.9
A06p11500 Brassica napus HOM05D000746 ORTHO05D005767 2.5e-62 242.3 144 79.2
C05p13620 Brassica napus HOM05D004669 ORTHO05D005767 2.5e-62 242.3 144 79.2
BolC5t30098H Brassica oleracea HOM05D004669 ORTHO05D005767 2.5e-62 242.3 144 79.2
BraA06t24327Z Brassica rapa HOM05D000746 ORTHO05D005767 2.5e-62 242.3 144 79.2
Os05g0519500 Oryza sativa ssp. japonica HOM05D004669 ORTHO05D005767 4.3e-62 241.5 142 81.0
BcaB03g13059 Brassica carinata HOM05D004669 ORTHO05D005767 5.7e-62 241.1 144 78.5
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 3.7e-61 238.4 144 79.2
Dinv30566 Davidia involucrata HOM05D004669 ORTHO05D005767 4.8e-61 238.0 144 81.9
Manes.11G052400 Manihot esculenta HOM05D004669 ORTHO05D005767 1.1e-60 236.9 144 80.6
Sed0020458 Sechium edule HOM05D004669 ORTHO05D005767 5.3e-60 234.6 153 75.8
MBI04_g45208_MAGBIO Magnolia biondii HOM05D004669 ORTHO05D005767 9.0e-60 233.8 144 80.6
Sp1g13810 Schrenkiella parvula HOM05D004669 ORTHO05D005767 1.3e-58 229.9 144 75.0
TAR627G0037 Trochodendron aralioides HOM05D004669 ORTHO05D005767 1.9e-57 226.1 144 77.1
Sabra01G0138300 Salix brachista HOM05D004669 ORTHO05D005767 1.6e-56 223.0 145 76.6
AUR62011570 Chenopodium quinoa HOM05D004669 ORTHO05D005767 2.7e-56 222.2 144 75.0
MD17G1203900 Malus domestica HOM05D004669 ORTHO05D005767 2.7e-56 222.2 144 79.2
Nitab4.5_0023790g0010 Nicotiana tabacum HOM05D004669 ORTHO05D005767 2.7e-56 222.2 144 76.4
Prupe.3G078900 Prunus persica HOM05D004669 ORTHO05D005767 4.6e-56 221.5 144 78.5
Ah.08g209920 Amaranthus hybridus HOM05D004669 ORTHO05D005767 6.1e-56 221.1 145 74.5
GSVIVG01017243001 Vitis vinifera HOM05D004669 ORTHO05D005767 7.9e-56 220.7 144 76.4
AUR62016387 Chenopodium quinoa HOM05D004669 ORTHO05D005767 1.3e-55 219.9 144 74.3
CsaV3_4G001370 Cucumis sativus L. HOM05D004669 ORTHO05D005767 2.3e-55 219.2 144 76.4
Nitab4.5_0000671g0170 Nicotiana tabacum HOM05D004669 ORTHO05D005767 3.9e-55 218.4 144 75.0
Cpa.g.sc10.221 Carica papaya HOM05D004669 ORTHO05D005767 5.1e-55 218.0 144 76.4
CANSAT56G1977 Cannabis sativa HOM05D004669 ORTHO05D005767 6.7e-55 217.6 144 75.7
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 1.1e-54 216.9 144 72.9
Carub.0001s1524 Capsella rubella HOM05D004669 ORTHO05D005767 1.5e-54 216.5 144 72.2
Phvul.009G217600 Phaseolus vulgaris HOM05D004669 ORTHO05D005767 1.5e-54 216.5 144 75.0
Potri.003G060500 Populus trichocarpa HOM05D004669 ORTHO05D005767 3.3e-54 215.3 144 75.7
ClCG06G013830 Citrullus lanatus HOM05D004669 ORTHO05D005767 5.7e-54 214.5 144 75.0
Psat4g082440 Pisum sativum HOM05D004669 ORTHO05D005767 5.7e-54 214.5 118 86.4
MELO3C017903.2 Cucumis melo HOM05D004669 ORTHO05D005767 7.4e-54 214.2 144 75.0
ClCG07G012820 Citrullus lanatus HOM05D004669 ORTHO05D005767 9.7e-54 213.8 144 75.0
Sopen03g038950 Solanum pennellii HOM05D004669 ORTHO05D005767 1.6e-53 213.0 144 74.3
PGSC0003DMG400005691 Solanum tuberosum HOM05D004669 ORTHO05D005767 1.6e-53 213.0 144 74.3
Sed0027531 Sechium edule HOM05D004669 ORTHO05D005767 2.2e-53 212.6 144 73.6
AL1G27560 Arabidopsis lyrata HOM05D004669 ORTHO05D005767 2.8e-53 212.2 144 70.8
Lalb_Chr11g0073441 Lupinus albus HOM05D004669 ORTHO05D005767 3.7e-53 211.8 144 72.2
Actinidia01772 Actinidia chinensis HOM05D004669 ORTHO05D005767 4.8e-53 211.5 144 75.0
Eucgr.J03040 Eucalyptus grandis HOM05D004669 ORTHO05D005767 8.2e-53 210.7 144 74.3
PGR031G2027 Punica granatum HOM05D004669 ORTHO05D005767 8.2e-53 210.7 144 74.3
AagrBONN_evm.TU.Sc2ySwM_228.5273 Anthoceros agrestis HOM05D004669 ORTHO05D005767 1.1e-52 210.3 141 69.5
QL05p027590 Quercus lobata HOM05D004669 ORTHO05D005767 1.1e-52 210.3 144 73.6
Nn8g39375 Nelumbo nucifera HOM05D004669 ORTHO05D005767 1.8e-52 209.5 144 73.6
Sed0001284 Sechium edule HOM05D004669 ORTHO05D005767 1.8e-52 209.5 144 72.2
Lj5A68G59 Lonicera japonica HOM05D004669 ORTHO05D005767 2.4e-52 209.1 144 73.6
LjContig00155g0017542 Lotus japonicus HOM05D004669 ORTHO05D005767 5.3e-52 208.0 144 71.5
Sed0010016 Sechium edule HOM05D004669 ORTHO05D005767 9.1e-52 207.2 144 72.2
PSO541G6522 Papaver somniferum HOM05D004669 ORTHO05D005767 1.5e-51 206.5 144 70.8
TPR.G37778 Trifolium pratense HOM05D004669 ORTHO05D005767 1.5e-51 206.5 144 72.9
Solyc03g120080.4 Solanum lycopersicum HOM05D004669 ORTHO05D005767 2.0e-51 206.1 144 72.9
ECA247G3964 Erigeron canadensis HOM05D004669 ORTHO05D005767 3.4e-51 205.3 144 72.9
CDE04G1486 Ceratophyllum demersum HOM05D004669 ORTHO05D005767 4.5e-51 204.9 144 70.1
Medtr7g076230 Medicago truncatula HOM05D004669 ORTHO05D005767 4.5e-51 204.9 144 72.9
CAN.G438.78 Capsicum annuum HOM05D004669 ORTHO05D005767 5.9e-51 204.5 144 72.2
Psat0s4195g0120 Pisum sativum HOM05D004669 ORTHO05D005767 5.9e-51 204.5 144 71.5
CARHR016000 Cardamine hirsuta HOM05D004669 ORTHO05D005767 7.7e-51 204.1 144 68.1
vmacro18956 Vaccinium macrocarpon HOM05D004669 ORTHO05D005767 7.7e-51 204.1 144 71.5
Oeu052287.2 Olea europaea HOM05D004669 ORTHO05D005767 1.0e-50 203.8 144 70.1
Cc04_g03970 Coffea canephora HOM05D004669 ORTHO05D005767 1.3e-50 203.4 144 71.5
Peaxi162Scf00015g00456 Petunia axillaris HOM05D004669 ORTHO05D005767 1.3e-50 203.4 144 71.5
THA.LOC104812492 Tarenaya hassleriana HOM05D004669 ORTHO05D005767 1.7e-50 203.0 144 70.1
HanXRQChr04g0096711 Helianthus annuus HOM05D004669 ORTHO05D005767 3.8e-50 201.8 144 71.5
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 3.8e-50 201.8 144 71.5
Lsat_1_v5_gn_1_33541 Lactuca sativa HOM05D004669 ORTHO05D005767 3.8e-50 201.8 144 72.2
FAN26G1001 Fragaria x ananassa HOM05D004669 ORTHO05D005767 8.5e-50 200.7 108 88.0
Migut.I00803 Erythranthe guttata HOM05D004669 ORTHO05D005767 1.4e-49 199.9 144 70.1
Aa31LG7G190 Aethionema arabicum HOM05D004669 ORTHO05D005767 1.9e-49 199.5 163 63.2
VMungo1309G3168 Vigna mungo HOM05D004669 ORTHO05D005767 1.9e-49 199.5 144 71.5
MSTRG.22725 Avicennia marina HOM05D004669 ORTHO05D005767 3.2e-49 198.7 144 70.1
CiPaw.02G154600 Carya illinoinensis HOM05D004669 ORTHO05D005767 5.5e-49 198.0 144 70.1
Haze_16509 Corylus avellana HOM05D004669 ORTHO05D005767 1.2e-48 196.8 134 73.9
Thhalv10006752m.g Eutrema salsugineum HOM05D004669 ORTHO05D005767 3.6e-48 195.3 144 66.0
Cfa002013 Carpinus fangiana HOM05D004669 ORTHO05D005767 4.6e-48 194.9 144 68.8
Psat3g100960 Pisum sativum HOM05D004669 ORTHO05D005767 4.6e-48 194.9 144 69.4
Ca_02514_v3 Cicer arietinum L. HOM05D004669 ORTHO05D005767 6.1e-48 194.5 144 70.8
Glyma.09G084600 Glycine max HOM05D004669 ORTHO05D005767 1.8e-47 193.0 144 69.4
Glyma.15G193000 Glycine max HOM05D004669 ORTHO05D005767 5.1e-47 191.4 144 68.8
Cre06.g254150 Chlamydomonas reinhardtii HOM05D004669 ORTHO05D005767 2.6e-46 189.1 148 60.8
Manes.04G117100 Manihot esculenta HOM05D004669 ORTHO05D005767 4.8e-45 184.9 141 67.4
SMO337G0094 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 4.5e-43 178.3 119 72.3
Pp3c7_9990 Physcomitrium patens HOM05D004669 ORTHO05D005767 5.9e-43 177.9 144 63.9
SGA_v2.0_scaffold5G02661 Striga asiatica HOM05D004669 ORTHO05D005767 7.7e-43 177.6 100 88.0
Mapoly0001s0129 Marchantia polymorpha HOM05D004669 ORTHO05D005767 7.2e-41 171.0 144 57.6
HPP92_024437 Vanilla planifolia HOM05D004669 ORTHO05D005767 7.9e-40 167.5 101 82.2
SMO336G0033 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 2.2e-37 159.5 146 59.6
CBR_g51007 Chara braunii HOM05D004669 ORTHO05D005767 4.8e-37 158.3 144 54.9
Atru.chr1.3106 Acer truncatum HOM05D004669 ORTHO05D005767 3.1e-36 155.6 82 93.9
ECA247G2328 Erigeron canadensis HOM05D004669 ORTHO05D005767 2.6e-35 152.5 150 58.7
ECA247G0606 Erigeron canadensis HOM05D004669 ORTHO05D005767 1.3e-26 123.6 70 80.0
Atru.chr1.3112 Acer truncatum HOM05D004669 ORTHO05D005767 2.9e-26 122.5 105 65.7
SMO337G0040 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 3.2e-25 119.0 79 70.9
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 4.2e-25 118.6 86 70.9
PRCOL_00000917 Prasinoderma coloniale HOM05D004669 ORTHO05D005767 3.6e-24 115.5 115 46.1
MCO13G313 Micromonas commoda HOM05D004669 ORTHO05D005767 1.5e-22 110.2 102 51.0
SMO174G0024 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 2.0e-19 99.8 62 77.4
SMO336G0019 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 4.5e-19 98.6 64 75.0
HanXRQChr04g0097231 Helianthus annuus HOM05D004669 ORTHO05D005767 1.7e-13 80.1 44 88.6
Actinidia15803 Actinidia chinensis HOM05D004669 ORTHO05D005767 1.8e-12 76.6 94 46.8
PSO832G2238 Papaver somniferum HOM05D004669 ORTHO05D005767 7.3e-09 64.7 38 81.6
PSO832G4299 Papaver somniferum HOM05D004669 ORTHO05D005767 7.3e-09 64.7 38 81.6


User provided reference genes

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