Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1183600 Malus domestica HOM05D005494 ORTHO05D006689 4.8e-213 744.2 368 100.0
MD14G1189700 Malus domestica HOM05D005494 ORTHO05D006689 6.2e-176 620.9 419 78.0
MD14G1057100 Malus domestica HOM05D005494 ORTHO05D006689 1.1e-175 620.2 381 84.5
Prupe.5G182300 Prunus persica HOM05D005494 ORTHO05D006689 1.2e-168 596.7 381 79.8
RcHm_v2.0_Chr7g0180051 Rosa chinensis HOM05D005494 ORTHO05D006689 7.8e-155 550.8 381 74.0
FAN04G1682 Fragaria x ananassa HOM05D005494 ORTHO05D006689 5.6e-153 544.7 381 73.2
QL10p014050 Quercus lobata HOM05D005494 ORTHO05D006689 2.1e-152 542.7 380 73.2
FAN18G0952 Fragaria x ananassa HOM05D005494 ORTHO05D006689 4.0e-151 538.5 381 73.0
Haze_07413 Corylus avellana HOM05D005494 ORTHO05D006689 9.0e-151 537.3 410 68.0
Cfa019036 Carpinus fangiana HOM05D005494 ORTHO05D006689 3.2e-148 528.9 381 71.1
FAN13G0712 Fragaria x ananassa HOM05D005494 ORTHO05D006689 1.2e-147 526.9 399 69.4
Dinv13115 Davidia involucrata HOM05D005494 ORTHO05D006689 4.3e-145 518.5 381 68.5
CiPaw.11G034500 Carya illinoinensis HOM05D005494 ORTHO05D006689 1.6e-144 516.5 381 68.5
GSVIVG01008098001 Vitis vinifera HOM05D005494 ORTHO05D006689 1.6e-144 516.5 381 68.5
Dinv07986 Davidia involucrata HOM05D005494 ORTHO05D006689 8.1e-144 514.2 381 68.0
Gorai.008G189500 Gossypium raimondii HOM05D005494 ORTHO05D006689 3.1e-143 512.3 378 68.0
Gohir.D12G177100 Gossypium hirsutum HOM05D005494 ORTHO05D006689 4.0e-143 511.9 378 67.7
CANSAT80G2452 Cannabis sativa HOM05D005494 ORTHO05D006689 6.9e-143 511.1 381 68.2
Ciclev10020622m.g Citrus clementina HOM05D005494 ORTHO05D006689 9.0e-143 510.8 374 68.7
CSS0010415 Camellia sinensis var. sinensis HOM05D005494 ORTHO05D006689 2.6e-142 509.2 383 67.9
CSS0047784 Camellia sinensis var. sinensis HOM05D005494 ORTHO05D006689 2.6e-142 509.2 383 67.9
Hma1.2p1_0572F.1_g181100 Hydrangea macrophylla HOM05D005494 ORTHO05D006689 5.8e-142 508.1 374 67.4
Gohir.A12G174400 Gossypium hirsutum HOM05D005494 ORTHO05D006689 1.3e-141 506.9 378 67.5
COL.COLO4_07634 Corchorus olitorius HOM05D005494 ORTHO05D006689 4.9e-141 505.0 380 67.6
Duzib084G0032 Durio zibethinus HOM05D005494 ORTHO05D006689 2.7e-139 499.2 379 67.5
Glyma.05G004700 Glycine max HOM05D005494 ORTHO05D006689 3.5e-139 498.8 370 65.7
Potri.012G073500 Populus trichocarpa HOM05D005494 ORTHO05D006689 7.9e-139 497.7 381 67.2
Thecc.10G120900 Theobroma cacao HOM05D005494 ORTHO05D006689 5.1e-138 495.0 369 69.1
Actinidia04945 Actinidia chinensis HOM05D005494 ORTHO05D006689 1.1e-137 493.8 379 65.7
Lalb_Chr08g0236101 Lupinus albus HOM05D005494 ORTHO05D006689 5.6e-137 491.5 379 65.4
ClCG01G014230 Citrullus lanatus HOM05D005494 ORTHO05D006689 9.6e-137 490.7 382 64.9
Manes.14G072100 Manihot esculenta HOM05D005494 ORTHO05D006689 9.6e-137 490.7 381 67.5
Glyma.04G177200 Glycine max HOM05D005494 ORTHO05D006689 2.8e-136 489.2 373 64.6
TWI09G1329 Tripterygium wilfordii HOM05D005494 ORTHO05D006689 3.7e-136 488.8 381 65.4
Phvul.004G010600 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 4.8e-136 488.4 373 64.9
CsaV3_1G008090 Cucumis sativus L. HOM05D005494 ORTHO05D006689 6.2e-136 488.0 375 65.1
Sed0009281 Sechium edule HOM05D005494 ORTHO05D006689 3.8e-133 478.8 375 64.8
Lj1g0011553 Lotus japonicus HOM05D005494 ORTHO05D006689 4.9e-133 478.4 373 64.6
TAR629G2056 Trochodendron aralioides HOM05D005494 ORTHO05D006689 6.4e-133 478.0 362 65.7
Cpa.g.sc30.67 Carica papaya HOM05D005494 ORTHO05D006689 4.2e-132 475.3 383 61.9
Nn3g17064 Nelumbo nucifera HOM05D005494 ORTHO05D006689 1.6e-131 473.4 383 61.9
VMungo0464G1007 Vigna mungo HOM05D005494 ORTHO05D006689 6.0e-131 471.5 373 63.3
Ca_18065_v3 Cicer arietinum L. HOM05D005494 ORTHO05D006689 6.7e-130 468.0 369 63.4
Sabra12G0052300 Salix brachista HOM05D005494 ORTHO05D006689 1.5e-129 466.8 363 66.1
vmacro19338 Vaccinium macrocarpon HOM05D005494 ORTHO05D006689 1.9e-129 466.5 475 53.5
arahy.Tifrunner.gnm1.ann1.Y2W2NU Arachis hypogaea HOM05D005494 ORTHO05D006689 3.3e-129 465.7 378 62.4
Eucgr.B00382 Eucalyptus grandis HOM05D005494 ORTHO05D006689 2.4e-127 459.5 376 64.4
Peaxi162Scf00017g02118 Petunia axillaris HOM05D005494 ORTHO05D006689 9.0e-127 457.6 381 61.9
Sopen03g032650 Solanum pennellii HOM05D005494 ORTHO05D006689 7.6e-126 454.5 381 60.6
Psat7g041440 Pisum sativum HOM05D005494 ORTHO05D006689 2.2e-125 453.0 373 62.5
Rhsim08G0163400 Rhododendron simsii HOM05D005494 ORTHO05D006689 2.9e-125 452.6 401 59.4
Solyc03g113610.4 Solanum lycopersicum HOM05D005494 ORTHO05D006689 3.8e-125 452.2 381 60.1
FvH4_5g16020 Fragaria vesca HOM05D005494 ORTHO05D006689 1.9e-124 449.9 321 71.3
MSTRG.9655 Avicennia marina HOM05D005494 ORTHO05D006689 2.5e-124 449.5 381 61.7
PGSC0003DMG400024571 Solanum tuberosum HOM05D005494 ORTHO05D006689 2.5e-124 449.5 381 59.8
MELO3C002226.2 Cucumis melo HOM05D005494 ORTHO05D006689 5.5e-124 448.4 376 62.2
Hund09389 Selenicereus undatus HOM05D005494 ORTHO05D006689 1.6e-123 446.8 371 60.6
SGA_v2.0_scaffold7G04099 Striga asiatica HOM05D005494 ORTHO05D006689 1.6e-123 446.8 381 60.4
AUR62021784 Chenopodium quinoa HOM05D005494 ORTHO05D006689 3.0e-122 442.6 377 60.7
AUR62008313 Chenopodium quinoa HOM05D005494 ORTHO05D006689 1.9e-121 439.9 377 60.2
arahy.Tifrunner.gnm1.ann1.QI1X69 Arachis hypogaea HOM05D005494 ORTHO05D006689 2.5e-121 439.5 370 60.5
DCAR_026093 Daucus carota HOM05D005494 ORTHO05D006689 3.3e-121 439.1 381 60.1
Oeu038310.1 Olea europaea HOM05D005494 ORTHO05D006689 9.7e-121 437.6 370 58.6
AUR62022932 Chenopodium quinoa HOM05D005494 ORTHO05D006689 2.2e-120 436.4 372 60.2
Nitab4.5_0000642g0180 Nicotiana tabacum HOM05D005494 ORTHO05D006689 8.2e-120 434.5 376 59.6
Atru.chr9.2369 Acer truncatum HOM05D005494 ORTHO05D006689 9.4e-116 421.0 280 74.3
Aqoxy3G03184 Aquilegia oxysepala HOM05D005494 ORTHO05D006689 2.7e-115 419.5 377 58.4
CAN.G999.3 Capsicum annuum HOM05D005494 ORTHO05D006689 3.6e-115 419.1 382 58.6
Lalb_Chr07g0182421 Lupinus albus HOM05D005494 ORTHO05D006689 7.9e-115 417.9 274 73.4
TAR622G0530 Trochodendron aralioides HOM05D005494 ORTHO05D006689 2.3e-114 416.4 361 60.1
PSO591G0251 Papaver somniferum HOM05D005494 ORTHO05D006689 6.7e-114 414.8 378 55.0
Psat7g079600 Pisum sativum HOM05D005494 ORTHO05D006689 1.5e-113 413.7 354 59.9
EL10Ac5g10874 Beta vulgaris HOM05D005494 ORTHO05D006689 2.5e-113 412.9 392 55.1
Lj5C118G23 Lonicera japonica HOM05D005494 ORTHO05D006689 1.4e-111 407.1 321 64.2
Lj4g0024662 Lotus japonicus HOM05D005494 ORTHO05D006689 1.4e-111 407.1 361 60.7
PSO832G2211 Papaver somniferum HOM05D005494 ORTHO05D006689 1.8e-111 406.8 378 54.5
Cc04_g16070 Coffea canephora HOM05D005494 ORTHO05D006689 3.1e-111 406.0 280 69.6
THA.LOC104818279 Tarenaya hassleriana HOM05D005494 ORTHO05D006689 6.9e-111 404.8 376 56.9
TPR.G17080 Trifolium pratense HOM05D005494 ORTHO05D006689 1.2e-110 404.1 378 55.8
THA.LOC104814121 Tarenaya hassleriana HOM05D005494 ORTHO05D006689 1.5e-110 403.7 376 57.2
Nitab4.5_0009486g0030 Nicotiana tabacum HOM05D005494 ORTHO05D006689 5.9e-110 401.7 363 58.1
Migut.N01938 Erythranthe guttata HOM05D005494 ORTHO05D006689 7.7e-110 401.4 378 56.1
AT5G11010 Arabidopsis thaliana HOM05D005494 ORTHO05D006689 2.9e-109 399.4 369 55.0
Aa31LG3G16120 Aethionema arabicum HOM05D005494 ORTHO05D006689 8.5e-109 397.9 376 53.7
AL6G21610 Arabidopsis lyrata HOM05D005494 ORTHO05D006689 1.1e-108 397.5 367 55.3
Sp6g32480 Schrenkiella parvula HOM05D005494 ORTHO05D006689 3.2e-108 396.0 377 55.2
Carub.0006s0951 Capsella rubella HOM05D005494 ORTHO05D006689 4.2e-108 395.6 367 55.0
Thhalv10000203m.g Eutrema salsugineum HOM05D005494 ORTHO05D006689 9.4e-108 394.4 369 55.0
HanXRQChr02g0045331 Helianthus annuus HOM05D005494 ORTHO05D006689 9.4e-108 394.4 359 56.5
CARHR202280 Cardamine hirsuta HOM05D005494 ORTHO05D006689 1.4e-106 390.6 369 55.8
Migut.D01889 Erythranthe guttata HOM05D005494 ORTHO05D006689 2.0e-105 386.7 379 54.9
Lsat_1_v5_gn_1_11340 Lactuca sativa HOM05D005494 ORTHO05D006689 4.4e-105 385.6 371 55.0
HanXRQChr16g0516751 Helianthus annuus HOM05D005494 ORTHO05D006689 9.7e-105 384.4 360 56.1
SHI07761 Sapria himalayana HOM05D005494 ORTHO05D006689 1.2e-102 377.5 363 55.4
Oeu039559.2 Olea europaea HOM05D005494 ORTHO05D006689 4.2e-100 369.0 263 67.3
AUR62012293 Chenopodium quinoa HOM05D005494 ORTHO05D006689 2.1e-99 366.7 377 53.3
Medtr8g080150 Medicago truncatula HOM05D005494 ORTHO05D006689 2.1e-99 366.7 354 56.8
A10p26670 Brassica napus HOM05D005494 ORTHO05D006689 4.4e-97 359.0 374 49.7
BcaC04g19267 Brassica carinata HOM05D005494 ORTHO05D006689 5.7e-97 358.6 361 51.0
C09p65840 Brassica napus HOM05D005494 ORTHO05D006689 9.7e-97 357.8 374 49.7
ECA247G2071 Erigeron canadensis HOM05D005494 ORTHO05D006689 1.3e-96 357.5 366 51.9
Medtr8g080140 Medicago truncatula HOM05D005494 ORTHO05D006689 3.7e-96 355.9 369 52.6
Oeu038311.1 Olea europaea HOM05D005494 ORTHO05D006689 5.9e-94 348.6 240 69.6
Zm00001eb121920 Zea mays HOM05D005494 ORTHO05D006689 1.0e-93 347.8 375 49.1
HPP92_008786 Vanilla planifolia HOM05D005494 ORTHO05D006689 1.7e-93 347.1 366 51.6
Os01g0184000 Oryza sativa ssp. japonica HOM05D005494 ORTHO05D006689 6.5e-93 345.1 379 49.1
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 7.2e-92 341.7 263 64.6
SEGI_00948 Sequoiadendron giganteum HOM05D005494 ORTHO05D006689 7.2e-92 341.7 395 48.4
Lsat_1_v5_gn_5_17360 Lactuca sativa HOM05D005494 ORTHO05D006689 1.7e-88 330.5 368 47.8
Aa31LG10G14040 Aethionema arabicum HOM05D005494 ORTHO05D006689 2.0e-86 323.6 351 49.6
unitig_8.g3614 Utricularia gibba HOM05D005494 ORTHO05D006689 1.0e-85 321.2 272 59.9
FAN08G3169 Fragaria x ananassa HOM05D005494 ORTHO05D006689 5.5e-84 315.5 190 81.6
Sc12g0005880 Simmondsia chinensis HOM05D005494 ORTHO05D006689 3.0e-82 309.7 250 62.0
GSVIVG01008100001 Vitis vinifera HOM05D005494 ORTHO05D006689 1.3e-77 294.3 183 78.1
HPP92_006463 Vanilla planifolia HOM05D005494 ORTHO05D006689 1.9e-76 290.4 367 41.4
Os01g0354700 Oryza sativa ssp. japonica HOM05D005494 ORTHO05D006689 3.0e-74 283.1 350 41.4
Mapoly0002s0051 Marchantia polymorpha HOM05D005494 ORTHO05D006689 2.9e-69 266.5 382 40.1
Duzib205G0238 Durio zibethinus HOM05D005494 ORTHO05D006689 3.1e-66 256.5 200 69.0
Pp3c4_400 Physcomitrium patens HOM05D005494 ORTHO05D006689 2.6e-65 253.4 376 38.8
Sc12g0005890 Simmondsia chinensis HOM05D005494 ORTHO05D006689 1.7e-64 250.8 194 66.0
CDE02G1640 Ceratophyllum demersum HOM05D005494 ORTHO05D006689 2.7e-62 243.4 204 61.8
Glyma.19G005300 Glycine max HOM05D005494 ORTHO05D006689 1.6e-59 234.2 151 76.8
Phvul.009G054101 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 1.2e-51 208.0 136 75.0
BolC9t59405H Brassica oleracea HOM05D005494 ORTHO05D006689 6.6e-45 185.7 168 57.1
AagrBONN_evm.TU.Sc2ySwM_344.720 Anthoceros agrestis HOM05D005494 ORTHO05D006689 3.8e-40 169.9 287 37.6
Thhalv10015920m.g Eutrema salsugineum HOM05D005494 ORTHO05D006689 8.1e-35 152.1 283 38.2
Glyma.06G187800 Glycine max HOM05D005494 ORTHO05D006689 3.0e-29 133.7 131 48.1
CBR_g8796 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-28 131.0 330 29.4
PRCOL_00002205 Prasinoderma coloniale HOM05D005494 ORTHO05D006689 4.6e-22 109.8 291 29.6
VMungo1309G1734 Vigna mungo HOM05D005494 ORTHO05D006689 1.5e-20 104.8 87 64.4
MBI06_g04707_MAGBIO Magnolia biondii HOM05D002360 ORTHO05D006689 4.8e-19 99.8 73 68.5
Atru.chr3.1308 Acer truncatum HOM05D005494 ORTHO05D006689 1.3e-16 91.7 57 75.4
Lalb_Chr07g0182431 Lupinus albus HOM05D005494 ORTHO05D006689 3.2e-15 87.0 56 73.2
Cre03.g168350 Chlamydomonas reinhardtii HOM05D005494 ORTHO05D006689 3.5e-14 83.6 93 44.1
Phvul.009G054050 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 1.6e-11 74.7 103 38.8
GSVIVG01008101001 Vitis vinifera HOM05D005494 ORTHO05D006689 2.1e-11 74.3 44 75.0
SGA_v2.0_scaffold114G31872 Striga asiatica HOM05D005494 ORTHO05D006689 6.2e-11 72.8 79 48.1
Lj5A118T79 Lonicera japonica HOM05D005494 ORTHO05D006689 5.8e-09 66.2 44 72.7


User provided reference genes

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