Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1040600 Malus domestica HOM05D002708 ORTHO05D016265 2.7e-121 438.7 228 100.0
Prupe.5G046800 Prunus persica HOM05D002708 ORTHO05D016265 4.4e-55 218.8 168 66.7
RcHm_v2.0_Chr7g0208291 Rosa chinensis HOM05D002708 ORTHO05D016265 7.0e-45 184.9 191 54.5
FvH4_5g21160 Fragaria vesca HOM05D002708 ORTHO05D016265 4.2e-42 175.6 191 51.8
FAN18G1042 Fragaria x ananassa HOM05D002708 ORTHO05D016265 4.2e-42 175.6 191 51.8
FAN13G0591 Fragaria x ananassa HOM05D002708 ORTHO05D016265 5.2e-40 168.7 191 49.7
FAN04G2890 Fragaria x ananassa HOM05D002708 ORTHO05D016265 8.3e-38 161.4 152 54.6
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 8.3e-30 134.8 166 45.8
arahy.Tifrunner.gnm1.ann1.9YLT9A Arachis hypogaea HOM05D002708 ORTHO05D003516 1.4e-29 134.0 166 45.8
Atru.chr7.2587 Acer truncatum HOM05D002708 ORTHO05D003516 2.0e-28 130.2 150 43.3
Phvul.009G084100 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 2.7e-28 129.8 157 42.7
Atru.chr3.3419 Acer truncatum HOM05D002708 ORTHO05D003516 3.5e-28 129.4 154 43.5
Glyma.07G107700 Glycine max HOM05D002708 ORTHO05D003516 3.5e-28 129.4 157 41.4
TAR375G0649 Trochodendron aralioides HOM05D002708 ORTHO05D016265 4.6e-28 129.0 155 41.9
Gohir.D12G045200 Gossypium hirsutum HOM05D002708 ORTHO05D003516 7.8e-28 128.3 126 49.2
Thecc.02G010700 Theobroma cacao HOM05D002708 ORTHO05D003516 7.8e-28 128.3 126 49.2
HPP92_028477 Vanilla planifolia HOM05D002708 ORTHO05D003516 7.8e-28 128.3 127 48.0
COL.COLO4_30887 Corchorus olitorius HOM05D002708 ORTHO05D003516 1.0e-27 127.9 159 42.1
Glyma.03G002400 Glycine max HOM05D002708 ORTHO05D003516 1.0e-27 127.9 128 47.7
Phvul.009G084000 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 1.0e-27 127.9 157 42.0
Gohir.A12G046100 Gossypium hirsutum HOM05D002708 ORTHO05D003516 1.3e-27 127.5 126 49.2
Gorai.008G047600 Gossypium raimondii HOM05D002708 ORTHO05D003516 1.3e-27 127.5 126 49.2
Nn4g24628 Nelumbo nucifera HOM05D002708 ORTHO05D003516 1.7e-27 127.1 127 48.8
VMungo1309G2216 Vigna mungo HOM05D002708 ORTHO05D003516 1.7e-27 127.1 128 45.3
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 2.3e-27 126.7 126 47.6
Gohir.A03G216900 Gossypium hirsutum HOM05D002708 ORTHO05D003516 2.9e-27 126.3 126 49.2
Lalb_Chr08g0244681 Lupinus albus HOM05D002708 ORTHO05D003516 2.9e-27 126.3 128 46.9
Gohir.D02G238500 Gossypium hirsutum HOM05D002708 ORTHO05D003516 3.9e-27 125.9 165 40.0
Gorai.005G267000 Gossypium raimondii HOM05D002708 ORTHO05D003516 3.9e-27 125.9 165 40.0
CSS0041941 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 5.0e-27 125.6 152 42.8
Ca_15806_v3 Cicer arietinum L. HOM05D002708 ORTHO05D003516 5.0e-27 125.6 117 50.4
Eucgr.J02249 Eucalyptus grandis HOM05D002708 ORTHO05D003516 6.6e-27 125.2 126 46.8
Duzib052G0664 Durio zibethinus HOM05D002708 ORTHO05D003516 8.6e-27 124.8 117 49.6
Ciclev10007609m.g Citrus clementina HOM05D002708 ORTHO05D003516 1.1e-26 124.4 150 41.3
Prupe.6G358600 Prunus persica HOM05D002708 ORTHO05D003516 1.9e-26 123.6 126 46.8
Cpa.g.sc17.146 Carica papaya HOM05D002708 ORTHO05D003516 2.5e-26 123.2 142 41.5
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 2.5e-26 123.2 152 38.2
ClCG09G010530 Citrullus lanatus HOM05D002708 ORTHO05D003516 3.3e-26 122.9 126 46.8
Oeu002888.1 Olea europaea HOM05D002708 ORTHO05D003516 3.3e-26 122.9 152 40.8
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 3.3e-26 122.9 128 43.0
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 3.3e-26 122.9 128 43.0
Sed0015739 Sechium edule HOM05D002708 ORTHO05D003516 3.3e-26 122.9 126 45.2
TWI63G0006 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 3.3e-26 122.9 126 48.4
CiPaw.08G004600 Carya illinoinensis HOM05D002708 ORTHO05D003516 4.3e-26 122.5 126 46.0
COL.COLO4_17667 Corchorus olitorius HOM05D002708 ORTHO05D003516 4.3e-26 122.5 126 47.6
TPR.G21430 Trifolium pratense HOM05D002708 ORTHO05D003516 5.6e-26 122.1 117 48.7
Potri.018G015200 Populus trichocarpa HOM05D002708 ORTHO05D003516 7.3e-26 121.7 126 46.0
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 7.3e-26 121.7 148 39.2
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 7.3e-26 121.7 126 48.4
Aqoxy7G03410 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 9.5e-26 121.3 126 49.2
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 9.5e-26 121.3 152 37.5
Thhalv10000061m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 9.5e-26 121.3 141 44.7
GSVIVG01036012001 Vitis vinifera HOM05D002708 ORTHO05D003516 9.5e-26 121.3 126 46.8
TWI32G0606 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 1.2e-25 120.9 115 48.7
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 1.6e-25 120.6 126 45.2
Nn3g18494 Nelumbo nucifera HOM05D002708 ORTHO05D003516 1.6e-25 120.6 127 45.7
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 1.6e-25 120.6 128 43.0
Psat5g034880 Pisum sativum HOM05D002708 ORTHO05D003516 1.6e-25 120.6 117 49.6
Sp4g03800 Schrenkiella parvula HOM05D002708 ORTHO05D003516 1.6e-25 120.6 127 46.5
MD04G1241100 Malus domestica HOM05D002708 ORTHO05D003516 2.1e-25 120.2 126 46.0
MD12G1258100 Malus domestica HOM05D002708 ORTHO05D003516 2.1e-25 120.2 126 46.8
Nitab4.5_0012432g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 2.1e-25 120.2 170 37.6
THA.LOC104803605 Tarenaya hassleriana HOM05D002708 ORTHO05D003516 2.1e-25 120.2 126 45.2
Actinidia33292 Actinidia chinensis HOM05D002708 ORTHO05D003516 2.8e-25 119.8 127 45.7
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 2.8e-25 119.8 127 45.7
BcaC07g40905 Brassica carinata HOM05D002708 ORTHO05D003516 2.8e-25 119.8 127 46.5
A09p56110 Brassica napus HOM05D002708 ORTHO05D003516 2.8e-25 119.8 127 46.5
C08p39040 Brassica napus HOM05D002708 ORTHO05D003516 2.8e-25 119.8 127 46.5
BolC8t51477H Brassica oleracea HOM05D002708 ORTHO05D003516 2.8e-25 119.8 127 46.5
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 2.8e-25 119.8 138 42.0
Nitab4.5_0001476g0150 Nicotiana tabacum HOM05D002708 ORTHO05D003516 2.8e-25 119.8 150 39.3
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 6.1e-25 118.6 126 45.2
Migut.B01470 Erythranthe guttata HOM05D002708 ORTHO05D003516 6.1e-25 118.6 153 37.3
BcaC02g08409 Brassica carinata HOM05D002708 ORTHO05D003516 8.0e-25 118.2 127 44.9
A04p19190 Brassica napus HOM05D002708 ORTHO05D003516 8.0e-25 118.2 127 44.9
BolC4t27001H Brassica oleracea HOM05D002708 ORTHO05D003516 8.0e-25 118.2 127 44.9
CANSAT25G3904 Cannabis sativa HOM05D002708 ORTHO05D003516 8.0e-25 118.2 127 45.7
FAN02G3944 Fragaria x ananassa HOM05D002708 ORTHO05D003516 8.0e-25 118.2 133 44.4
Medtr3g105430 Medicago truncatula HOM05D002708 ORTHO05D003516 8.0e-25 118.2 142 42.3
Peaxi162Scf01124g00013 Petunia axillaris HOM05D002708 ORTHO05D003516 8.0e-25 118.2 126 43.7
FAN09G1379 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.0e-24 117.9 133 44.4
Actinidia21606 Actinidia chinensis HOM05D002708 ORTHO05D003516 1.4e-24 117.5 127 43.3
Lalb_Chr23g0268061 Lupinus albus HOM05D002708 ORTHO05D003516 1.4e-24 117.5 154 39.0
Os10g0569200 Oryza sativa ssp. japonica HOM05D002708 ORTHO05D003516 1.4e-24 117.5 126 42.9
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 1.4e-24 117.5 126 43.7
FAN05G3540 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.8e-24 117.1 118 47.5
Lsat_1_v5_gn_7_11740 Lactuca sativa HOM05D002708 ORTHO05D003516 1.8e-24 117.1 155 38.1
EL10Ac4g08928 Beta vulgaris HOM05D002708 ORTHO05D003516 2.3e-24 116.7 126 46.0
MBI19_g28098_MAGBIO Magnolia biondii HOM05D002708 ORTHO05D003516 2.3e-24 116.7 127 44.1
C04p54590 Brassica napus HOM05D002708 ORTHO05D003516 3.1e-24 116.3 127 44.9
AUR62037481 Chenopodium quinoa HOM05D002708 ORTHO05D003516 3.1e-24 116.3 194 35.1
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 3.1e-24 116.3 126 44.4
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 3.1e-24 116.3 126 44.4
BraA09t41006Z Brassica rapa HOM05D002708 ORTHO05D003516 4.0e-24 115.9 127 44.9
FvH4_6g00800 Fragaria vesca HOM05D002708 ORTHO05D003516 4.0e-24 115.9 133 43.6
FAN14G3709 Fragaria x ananassa HOM05D002708 ORTHO05D003516 4.0e-24 115.9 133 43.6
Potri.006G267500 Populus trichocarpa HOM05D002708 ORTHO05D003516 4.0e-24 115.9 126 44.4
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 4.0e-24 115.9 126 46.0
AUR62004771 Chenopodium quinoa HOM05D002708 ORTHO05D003516 5.2e-24 115.5 194 35.1
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 6.8e-24 115.2 116 47.4
Cfa002667 Carpinus fangiana HOM05D002708 ORTHO05D003516 6.8e-24 115.2 126 42.9
SalBow5G4312 Salvia bowleyana HOM05D002708 ORTHO05D003516 6.8e-24 115.2 126 42.9
CSS0039264 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 8.9e-24 114.8 135 41.5
CAN.G1480.4 Capsicum annuum HOM05D002708 ORTHO05D003516 8.9e-24 114.8 150 37.3
DCAR_029539 Daucus carota HOM05D002708 ORTHO05D003516 8.9e-24 114.8 167 37.1
HanXRQChr11g0341881 Helianthus annuus HOM05D002708 ORTHO05D003516 8.9e-24 114.8 155 37.4
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 8.9e-24 114.8 133 41.4
AT5G25780 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 1.2e-23 114.4 116 46.6
BcaB06g28016 Brassica carinata HOM05D002708 ORTHO05D003516 1.2e-23 114.4 151 40.4
Carub.0006s2495 Capsella rubella HOM05D002708 ORTHO05D003516 1.2e-23 114.4 139 38.8
Cfa017363 Carpinus fangiana HOM05D002708 ORTHO05D003516 1.2e-23 114.4 126 42.1
AL6G39390 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.5e-23 114.0 116 46.6
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 1.5e-23 114.0 126 43.7
AT5G27640 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 2.0e-23 113.6 116 46.6
Cfa013020 Carpinus fangiana HOM05D002708 ORTHO05D003516 2.0e-23 113.6 163 36.2
Lsat_1_v5_gn_1_83221 Lactuca sativa HOM05D002708 ORTHO05D003516 2.0e-23 113.6 155 37.4
PGSC0003DMG400001674 Solanum tuberosum HOM05D002708 ORTHO05D003516 2.0e-23 113.6 150 37.3
HanXRQChr11g0352181 Helianthus annuus HOM05D002708 ORTHO05D003516 2.6e-23 113.2 155 36.8
Solyc01g088370.3 Solanum lycopersicum HOM05D002708 ORTHO05D003516 2.6e-23 113.2 150 37.3
CSS0029201 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 3.4e-23 112.8 135 42.2
ECA248G0935 Erigeron canadensis HOM05D002708 ORTHO05D003516 5.8e-23 112.1 161 34.8
QL08p065006 Quercus lobata HOM05D002708 ORTHO05D003516 5.8e-23 112.1 150 41.3
vmacro21095 Vaccinium macrocarpon HOM05D002708 ORTHO05D003516 5.8e-23 112.1 128 43.8
MSTRG.20407 Avicennia marina HOM05D002708 ORTHO05D003516 7.5e-23 111.7 155 35.5
CARHR294550 Cardamine hirsuta HOM05D002708 ORTHO05D003516 7.5e-23 111.7 116 44.8
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 9.8e-23 111.3 126 44.4
Sopen01g035200 Solanum pennellii HOM05D002708 ORTHO05D003516 9.8e-23 111.3 150 36.0
Dinv44002 Davidia involucrata HOM05D002708 ORTHO05D003516 1.3e-22 110.9 150 37.3
Rhsim01G0145200 Rhododendron simsii HOM05D002708 ORTHO05D003516 1.7e-22 110.5 126 42.1
Haze_08297 Corylus avellana HOM05D002708 ORTHO05D016265 6.4e-22 108.6 128 47.7
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 6.4e-22 108.6 149 38.3
Sc20g0000810 Simmondsia chinensis HOM05D002708 ORTHO05D003516 1.9e-21 107.1 124 41.9
QL02p018118 Quercus lobata HOM05D002708 ORTHO05D003516 3.2e-21 106.3 130 41.5
TPR.G27979 Trifolium pratense HOM05D002708 ORTHO05D003516 3.2e-21 106.3 116 44.8
BraA04t17520Z Brassica rapa HOM05D002708 ORTHO05D003516 7.0e-21 105.1 150 38.0
ECA248G3827 Erigeron canadensis HOM05D002708 ORTHO05D003516 7.0e-21 105.1 154 34.4
SEGI_28578 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 9.2e-21 104.8 135 35.6
unitig_0.g1326 Utricularia gibba HOM05D002708 ORTHO05D003516 9.2e-21 104.8 150 35.3
SEGI_02227 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.6e-20 104.0 140 35.7
HanXRQChr03g0088081 Helianthus annuus HOM05D002708 ORTHO05D003516 2.0e-20 103.6 135 38.5
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 6.0e-20 102.1 152 35.5
ATR0794G148 Amborella trichopoda HOM05D002708 ORTHO05D003516 1.7e-19 100.5 126 38.9
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 8.6e-19 98.2 126 38.1
SGA_v2.0_scaffold85G26804 Striga asiatica HOM05D002708 ORTHO05D003516 1.9e-18 97.1 156 34.6
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 5.6e-18 95.5 125 39.2
Dinv43572 Davidia involucrata HOM05D002708 ORTHO05D003516 5.6e-18 95.5 100 48.0
Glyma.04G057632 Glycine max HOM05D002708 ORTHO05D003516 2.8e-17 93.2 97 44.3
Lj9A548G53 Lonicera japonica HOM05D002708 ORTHO05D003516 3.6e-17 92.8 93 45.2
Thhalv10027018m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 4.7e-17 92.4 110 43.6
Pp3c7_370 Physcomitrium patens HOM05D002708 ORTHO05D003516 6.2e-17 92.0 161 33.5
BcaNung04121 Brassica carinata HOM05D002708 ORTHO05D003516 1.8e-16 90.5 157 35.0
AagrBONN_evm.TU.Sc2ySwM_117.472 Anthoceros agrestis HOM05D002708 ORTHO05D003516 2.3e-16 90.1 113 38.1
CBR_g32387 Chara braunii HOM05D002708 ORTHO05D003516 6.8e-16 88.6 102 38.2
Mapoly0108s0028 Marchantia polymorpha HOM05D002708 ORTHO05D003516 6.8e-16 88.6 152 32.2
EL10Ac5g11414 Beta vulgaris HOM05D002708 ORTHO05D003516 8.9e-16 88.2 164 33.5
Pp3c11_25960 Physcomitrium patens HOM05D002708 ORTHO05D003516 1.2e-15 87.8 127 37.8
Haze_20811 Corylus avellana HOM05D002708 ORTHO05D003516 3.4e-15 86.3 82 46.3
SGA_v2.0_scaffold578G53025 Striga asiatica HOM05D002708 ORTHO05D003516 4.9e-14 82.4 81 45.7
SMO270G0119 Selaginella moellendorffii HOM05D002708 ORTHO05D003516 8.3e-14 81.6 98 38.8
SEGI_35485 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 4.1e-13 79.3 85 42.4
CSS0024835 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.2e-12 77.8 135 33.3
Nitab4.5_0009957g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 1.6e-12 77.4 150 30.0
Sed0010327 Sechium edule HOM05D002708 ORTHO05D003516 2.5e-10 70.1 107 38.3
MCO03G077 Micromonas commoda HOM05D002708 ORTHO05D003516 1.6e-09 67.4 130 31.5
Cre03.g190100 Chlamydomonas reinhardtii HOM05D002708 ORTHO05D003516 1.1e-08 64.7 133 28.6
PRCOL_00000791 Prasinoderma coloniale HOM05D002708 ORTHO05D003516 4.0e-08 62.8 119 33.6
SGA_v2.0_scaffold90G27667 Striga asiatica HOM05D002708 ORTHO05D003516 3.4e-07 59.7 105 32.4


User provided reference genes

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