Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1884.0 956 100.0
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1706.4 956 90.7
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 0.0e+00 1581.6 943 84.7
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 0.0e+00 1420.2 971 75.0
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1337.4 975 71.5
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 0.0e+00 1336.6 976 71.5
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1327.8 993 70.3
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1268.4 1041 66.1
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 0.0e+00 1199.1 951 65.8
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 0.0e+00 1195.3 961 64.3
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 0.0e+00 1192.9 953 65.6
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 0.0e+00 1162.9 958 61.4
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 0.0e+00 1157.5 952 63.2
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 0.0e+00 1151.0 954 63.3
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 0.0e+00 1147.9 946 62.6
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 0.0e+00 1141.7 965 62.8
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 0.0e+00 1140.9 946 62.4
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 0.0e+00 1138.6 952 64.1
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 0.0e+00 1131.3 959 63.3
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 0.0e+00 1123.6 959 61.3
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 0.0e+00 1119.4 947 63.5
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 0.0e+00 1116.7 950 61.8
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 0.0e+00 1110.5 952 61.7
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 0.0e+00 1109.4 951 62.1
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 0.0e+00 1107.0 962 60.1
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 0.0e+00 1100.9 952 62.4
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 0.0e+00 1090.1 926 63.4
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 0.0e+00 1085.1 954 59.5
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 9.8e-311 1070.1 953 59.3
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 3.2e-309 1065.1 954 59.1
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 3.4e-303 1045.0 958 58.0
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 2.9e-302 1042.0 967 57.9
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.6e-300 1036.2 953 56.6
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 6.1e-300 1034.2 962 57.7
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 8.8e-299 1030.4 953 56.7
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 8.8e-299 1030.4 954 57.1
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 4.3e-298 1028.1 950 56.6
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 1.3e-297 1026.5 944 57.0
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 8.2e-297 1023.8 961 56.5
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 3.1e-296 1021.9 974 57.2
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 4.5e-295 1018.1 954 56.3
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.0e-294 1016.9 956 56.4
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 6.5e-294 1014.2 956 57.0
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 4.2e-293 1011.5 964 56.7
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 4.4e-290 1001.5 964 56.6
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 5.7e-290 1001.1 965 55.4
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 1.3e-289 1000.0 959 55.9
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 5.3e-288 994.6 965 55.6
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 2.6e-287 992.3 997 53.8
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 1.0e-286 990.3 956 56.4
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 2.2e-286 989.2 960 55.9
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 5.0e-286 988.0 975 55.1
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 1.9e-285 986.1 945 55.3
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 2.7e-284 982.2 958 56.3
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 3.6e-284 981.9 951 55.6
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 1.5e-282 976.5 980 53.7
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 6.3e-281 971.1 954 54.9
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 9.1e-280 967.2 960 55.4
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 2.5e-277 959.1 960 54.2
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 3.6e-276 955.3 956 56.3
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 3.0e-275 952.2 939 54.3
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 3.5e-271 938.7 960 53.9
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 4.7e-268 928.3 953 52.7
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 4.4e-266 921.8 956 52.8
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 6.3e-265 917.9 931 56.8
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.7e-263 912.5 802 61.0
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 4.5e-263 911.8 953 53.4
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 7.2e-261 904.4 814 60.9
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 6.3e-257 891.3 954 52.9
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.1e-256 890.6 953 52.6
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 4.5e-255 885.2 954 52.6
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 4.5e-255 885.2 948 52.8
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 5.0e-254 881.7 975 51.3
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 5.0e-254 881.7 876 55.1
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 2.1e-252 876.3 980 50.0
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 4.4e-250 868.6 975 51.7
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 1.3e-249 867.1 859 53.7
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 8.3e-249 864.4 835 55.7
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 8.6e-246 854.4 954 49.1
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 4.7e-244 848.6 951 51.0
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 2.6e-242 842.8 936 50.6
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 4.4e-242 842.0 968 49.9
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 3.2e-240 835.9 954 47.9
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.2e-240 834.3 909 53.8
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 1.6e-239 833.6 811 57.3
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 1.0e-238 830.9 1002 48.1
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 3.3e-237 825.9 939 49.4
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.4e-234 815.5 787 58.4
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 2.0e-226 790.0 949 47.6
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 7.6e-226 788.1 977 47.1
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.3e-225 787.3 970 47.1
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.7e-225 786.9 725 57.2
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 2.4e-224 783.1 957 47.9
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 3.6e-220 769.2 972 46.7
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 9.0e-219 764.6 973 46.7
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 1.5e-218 763.8 726 56.5
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 2.6e-218 763.1 979 46.9
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 3.3e-213 746.1 897 47.8
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 5.3e-211 738.8 894 48.2
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 4.8e-204 715.7 868 48.4
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.0e-203 712.6 570 65.6
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.5e-202 709.1 570 65.3
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 1.0e-198 698.0 1040 42.1
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.6e-197 692.2 599 62.1
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.5e-194 684.1 643 55.7
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.1e-184 651.4 678 51.5
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 3.6e-183 646.4 664 54.4
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 4.6e-183 646.0 664 54.4
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 5.9e-178 629.0 866 42.7
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-177 627.9 534 62.9
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 2.0e-170 604.0 815 44.3
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 5.9e-162 575.9 655 47.6
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 8.5e-161 572.0 660 46.8
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 7.2e-160 568.9 779 43.8
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 8.0e-143 512.3 714 42.9
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 1.3e-140 505.0 949 36.2
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 4.1e-139 500.0 722 42.0
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 4.1e-139 500.0 1043 33.7
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 2.0e-138 497.7 482 57.9
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 1.8e-134 484.6 956 34.4
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 5.0e-129 466.5 857 36.2
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 5.6e-128 463.0 871 36.4
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 7.1e-115 419.5 358 59.5
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 1.7e-108 398.3 596 41.8
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 2.4e-102 377.9 557 44.0
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 2.6e-101 374.4 593 40.3
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.3e-97 361.3 258 72.9
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.8e-95 354.4 559 39.4
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 4.8e-95 353.6 267 67.4
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.9e-92 343.6 419 50.8
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.4e-85 320.9 220 70.9
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 8.4e-76 289.7 1169 24.8
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 1.0e-73 282.7 345 45.2
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 3.9e-73 280.8 347 46.1
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.2e-61 242.7 273 46.5
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 1.1e-56 226.1 199 56.3
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 4.7e-50 204.1 228 46.9
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 1.4e-49 202.6 152 68.4
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 3.1e-46 191.4 272 42.3
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 5.9e-45 187.2 144 67.4
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 7.7e-45 186.8 189 50.8
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 2.9e-44 184.9 310 38.1
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 2.2e-39 168.7 212 46.2
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-37 162.2 436 31.2
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 6.8e-33 147.1 150 55.3
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 2.4e-30 138.7 92 72.8
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 1.0e-28 133.3 100 68.0
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 1.0e-28 133.3 140 55.0
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 4.7e-26 124.4 125 52.8
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 3.4e-24 118.2 84 67.9
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 2.9e-23 115.2 226 34.5
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 3.5e-21 108.2 128 46.1
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 3.0e-20 105.1 144 42.4
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 3.6e-18 98.2 152 39.5
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 4.4e-16 91.3 235 29.8
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 9.8e-16 90.1 150 37.3
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 9.8e-16 90.1 283 25.8
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 2.9e-15 88.6 97 49.5
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 2.9e-15 88.6 105 46.7
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 1.7e-12 79.3 130 36.2
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 2.3e-12 79.0 87 48.3
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 6.6e-12 77.4 84 48.8
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 1.1e-11 76.6 85 47.1
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 1.1e-11 76.6 85 47.1
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 1.1e-11 76.6 85 47.1
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 2.5e-11 75.5 122 39.3
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 3.3e-11 75.1 64 59.4
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 9.5e-11 73.6 81 49.4
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 4.0e-09 68.2 81 44.4
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 4.0e-09 68.2 81 44.4
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 3.7e-07 61.6 122 36.1
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 6.4e-07 60.8 101 37.6
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 4.1e-06 58.2 149 28.9


User provided reference genes

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