Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 2.6e-153 545.4 293 100.0
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 8.2e-131 470.7 321 78.5
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.4e-125 453.4 320 75.0
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.4e-125 453.4 320 75.0
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.1e-125 451.4 320 75.0
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 1.1e-124 450.3 320 75.0
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 2.5e-119 432.6 293 75.4
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 4.2e-119 431.8 316 71.2
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 7.2e-119 431.0 312 72.1
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 9.4e-119 430.6 309 71.8
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.6e-118 429.9 316 70.6
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 2.1e-118 429.5 308 73.4
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 6.1e-118 427.9 312 72.1
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 1.4e-117 426.8 316 70.6
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.8e-117 426.4 319 71.8
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.8e-117 426.4 319 71.8
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.9e-117 425.2 308 73.4
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 5.2e-117 424.9 306 74.5
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 8.8e-117 424.1 316 69.9
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.6e-116 422.5 319 70.2
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.6e-116 422.5 319 70.2
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.6e-116 422.5 312 70.8
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.4e-116 421.8 319 69.6
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 7.4e-116 421.0 312 69.2
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 9.7e-116 420.6 316 69.3
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.7e-115 419.9 310 71.6
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 3.7e-115 418.7 315 69.5
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 4.8e-115 418.3 325 68.6
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 1.4e-114 416.8 311 70.1
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.4e-114 416.8 308 70.5
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 2.4e-114 416.0 309 71.2
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 2.4e-114 416.0 303 70.0
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 3.1e-114 415.6 307 70.0
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 3.1e-114 415.6 314 69.1
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.1e-114 415.2 311 68.8
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 5.3e-114 414.8 315 69.5
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 5.3e-114 414.8 311 69.1
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 5.3e-114 414.8 311 69.1
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 9.1e-114 414.1 313 70.0
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 2.6e-113 412.5 311 68.8
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 4.5e-113 411.8 310 70.3
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 4.5e-113 411.8 316 68.7
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 5.9e-113 411.4 308 69.2
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 5.9e-113 411.4 307 69.7
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 5.9e-113 411.4 307 69.7
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 5.9e-113 411.4 310 70.0
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 7.7e-113 411.0 308 69.2
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 1.0e-112 410.6 322 66.8
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.0e-112 410.6 324 68.5
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.3e-112 410.2 308 68.5
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 2.2e-112 409.5 303 73.6
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 2.2e-112 409.5 307 72.3
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 5.0e-112 408.3 311 70.1
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 6.5e-112 407.9 311 68.8
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 1.1e-111 407.1 309 67.6
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 1.1e-111 407.1 303 69.3
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 1.1e-111 407.1 307 68.1
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 1.1e-111 407.1 312 68.3
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 2.5e-111 406.0 315 68.3
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 3.2e-111 405.6 313 68.4
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 3.2e-111 405.6 309 68.0
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 5.5e-111 404.8 313 68.1
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 2.1e-110 402.9 312 67.3
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.7e-110 402.5 316 66.5
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 6.1e-110 401.4 318 67.0
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 8.0e-110 401.0 303 68.6
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 5.2e-109 398.3 311 67.2
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 5.2e-109 398.3 309 72.2
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 2.0e-108 396.4 311 67.5
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 2.6e-108 396.0 309 70.6
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 9.7e-108 394.0 299 71.6
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 9.7e-108 394.0 299 71.6
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 9.7e-108 394.0 299 71.6
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 9.7e-108 394.0 309 68.0
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 1.3e-107 393.7 320 65.3
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 1.3e-107 393.7 360 60.0
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 1.7e-107 393.3 300 72.3
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.2e-107 392.9 345 62.0
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 2.2e-107 392.9 299 70.9
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 2.2e-107 392.9 308 66.9
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 2.8e-107 392.5 299 70.2
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 2.8e-107 392.5 299 70.2
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 4.8e-107 391.7 306 67.0
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.8e-106 389.8 310 66.8
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 3.1e-106 389.0 310 69.0
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.1e-106 388.7 310 66.1
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 4.1e-106 388.7 308 69.8
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 5.3e-106 388.3 295 68.5
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 7.0e-106 387.9 310 70.0
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.0e-105 386.3 300 67.7
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 5.9e-105 384.8 311 65.0
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 5.0e-104 381.7 305 66.2
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 5.5e-103 378.3 227 84.1
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 3.0e-101 372.5 291 68.7
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 5.2e-101 371.7 314 67.8
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 2.6e-100 369.4 336 59.8
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 9.8e-100 367.5 305 64.3
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.2e-99 366.3 224 82.6
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.7e-97 359.4 266 71.8
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.0e-96 357.5 227 78.4
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.3e-95 352.4 273 67.0
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 3.3e-95 352.4 328 59.5
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 8.0e-94 347.8 342 54.7
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 5.2e-93 345.1 340 54.7
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.6e-92 342.8 227 75.8
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.7e-91 340.1 227 77.5
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 4.9e-91 338.6 203 82.3
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 6.6e-88 328.2 293 62.1
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.6e-86 323.6 296 57.1
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 2.8e-86 322.8 211 78.2
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 2.3e-85 319.7 295 59.0
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.5e-84 317.0 317 53.0
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.7e-83 313.5 309 57.9
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.7e-83 312.4 224 71.9
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 5.4e-82 308.5 282 59.6
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 7.0e-82 308.1 293 55.6
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 4.3e-79 298.9 185 80.0
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 2.5e-63 246.5 192 68.2
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 9.5e-63 244.6 295 53.2
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 9.9e-60 234.6 229 59.0
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.4e-58 230.7 192 69.3
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 5.4e-58 228.8 237 54.4
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 5.1e-56 222.2 232 54.7
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 9.3e-50 201.4 117 87.2
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 8.1e-46 188.3 227 48.0
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.4e-42 177.6 306 40.2
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 6.0e-41 172.2 220 45.5
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.0e-40 171.4 189 51.9
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.0e-40 171.4 192 53.1
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.9e-39 167.2 95 88.4
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 3.4e-36 156.4 190 49.5
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 5.8e-36 155.6 96 84.4
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 6.5e-35 152.1 122 65.6
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 9.3e-34 148.3 93 83.9
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.7e-33 146.7 107 67.3
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.5e-31 140.2 125 60.0
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.5e-31 140.2 125 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 2.8e-30 136.7 199 44.7
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.8e-29 134.0 229 42.8
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 5.8e-28 129.0 80 78.8
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 1.1e-26 124.8 138 53.6
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 5.7e-23 112.5 99 61.6
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 1.3e-22 111.3 232 38.4
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.5e-12 77.8 62 67.7
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.8e-11 73.2 61 63.9
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 2.5e-10 70.5 38 78.9
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.8e-08 64.3 42 66.7
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 6.7e-08 62.4 128 38.3
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 8.8e-08 62.0 62 58.1
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 2.0e-07 60.8 57 64.9
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 2.8e-06 57.0 46 56.5
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 8.2e-06 55.5 43 62.8


User provided reference genes

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