Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 1.3e-90 336.3 164 100.0
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 4.5e-78 294.7 160 87.5
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 2.0e-73 279.3 160 83.8
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.3e-71 271.2 160 79.4
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 4.5e-70 268.1 160 78.1
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.9e-69 265.4 160 76.9
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 5.0e-69 264.6 160 79.4
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.5e-69 264.2 160 76.2
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.5e-68 263.1 160 77.5
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 9.4e-68 260.4 160 77.5
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.6e-67 259.6 160 76.9
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 1.2e-65 253.4 160 76.2
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 2.6e-65 252.3 160 76.9
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 2.6e-65 252.3 160 76.9
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 2.6e-65 252.3 160 75.0
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 2.6e-65 252.3 160 75.6
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 3.3e-65 251.9 160 75.6
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 5.7e-65 251.1 160 76.2
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 9.7e-65 250.4 158 75.9
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 6.3e-64 247.7 160 71.2
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 6.3e-64 247.7 160 72.5
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 1.1e-63 246.9 160 72.5
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 1.8e-63 246.1 160 73.8
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 1.8e-63 246.1 160 72.5
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 3.1e-63 245.4 160 74.4
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 7.0e-63 244.2 160 71.9
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 9.1e-63 243.8 160 71.2
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 1.6e-62 243.0 160 71.2
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 2.0e-62 242.7 160 70.6
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 2.0e-62 242.7 161 73.3
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 3.5e-62 241.9 160 70.6
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 4.5e-62 241.5 160 71.9
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 4.5e-62 241.5 160 73.8
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 1.0e-61 240.4 160 70.6
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 1.0e-61 240.4 160 70.6
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 1.3e-61 240.0 158 70.9
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 1.3e-61 240.0 158 72.8
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 3.8e-61 238.4 160 70.6
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 6.5e-61 237.7 158 70.3
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 8.5e-61 237.3 159 72.3
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.1e-60 236.9 159 68.6
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.1e-60 236.9 159 68.6
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 1.1e-60 236.9 158 70.3
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 1.5e-60 236.5 157 71.3
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 3.2e-60 235.3 160 69.4
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 5.5e-60 234.6 160 70.0
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 5.5e-60 234.6 160 69.4
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 9.4e-60 233.8 160 69.4
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.2e-59 233.4 160 68.1
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 1.6e-59 233.0 160 69.4
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 6.1e-59 231.1 162 67.3
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 6.1e-59 231.1 160 67.5
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 8.0e-59 230.7 160 68.8
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 8.0e-59 230.7 153 73.2
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 1.0e-58 230.3 160 68.1
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 1.8e-58 229.6 160 68.8
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 2.3e-58 229.2 160 66.2
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 4.0e-58 228.4 160 66.9
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 5.2e-58 228.0 160 68.8
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 5.2e-58 228.0 160 68.1
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 6.8e-58 227.6 160 67.5
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 6.8e-58 227.6 160 68.1
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 1.2e-57 226.9 160 68.1
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 1.2e-57 226.9 160 66.9
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 2.6e-57 225.7 158 68.4
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 3.4e-57 225.3 160 67.5
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 3.4e-57 225.3 160 66.9
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 7.5e-57 224.2 160 67.5
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 2.8e-56 222.2 160 66.2
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 4.8e-56 221.5 160 65.0
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 8.3e-56 220.7 153 69.9
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 1.1e-55 220.3 160 65.0
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 1.1e-55 220.3 160 65.6
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 4.1e-55 218.4 160 63.1
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 5.4e-55 218.0 160 66.2
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 7.0e-55 217.6 150 66.0
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 2.7e-54 215.7 160 61.9
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 1.0e-53 213.8 160 63.1
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 1.7e-53 213.0 163 60.1
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 2.3e-53 212.6 160 60.0
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 2.9e-53 212.2 150 67.3
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 3.8e-53 211.8 160 60.0
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 5.0e-53 211.5 114 90.4
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 1.5e-52 209.9 160 59.4
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 1.5e-52 209.9 160 59.4
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 4.2e-52 208.4 160 58.8
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 5.5e-52 208.0 160 60.6
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.2e-52 207.6 160 61.2
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 9.5e-52 207.2 163 58.3
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 1.2e-51 206.8 156 62.8
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 4.7e-51 204.9 158 62.0
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 4.0e-50 201.8 163 56.4
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.2e-50 201.4 123 76.4
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 2.0e-49 199.5 153 59.5
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 2.0e-49 199.5 150 65.3
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 4.9e-48 194.9 158 58.9
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 6.3e-48 194.5 160 56.2
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.4e-47 193.4 158 58.2
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.1e-47 192.2 118 75.4
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 1.2e-46 190.3 143 60.8
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 7.8e-46 187.6 127 73.2
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 2.3e-45 186.0 148 60.8
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 6.6e-37 157.9 158 52.5
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.6e-36 154.8 155 47.7
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.1e-35 152.9 155 47.1
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 1.5e-33 146.7 150 46.7
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 4.9e-32 141.7 161 42.9
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 1.1e-31 140.6 152 43.4
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.4e-31 140.2 149 47.0
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 2.1e-30 136.3 93 66.7
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.6e-30 135.2 135 48.1
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 6.0e-30 134.8 165 40.0
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 9.5e-28 127.5 147 42.2
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 3.2e-23 112.5 159 39.0
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 2.8e-19 99.4 142 36.6
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 6.8e-18 94.7 59 74.6
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 2.3e-13 79.7 59 61.0
MD12G1173500 Malus domestica HOM05D005074 ORTHO05D247951 6.4e-08 61.6 35 82.9
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 2.4e-07 59.7 140 27.1
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 2.1e-06 56.6 39 69.2


User provided reference genes

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