Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1091100 Malus domestica HOM05D004852 ORTHO05D006128 1.4e-198 696.0 351 100.0
MD10G1098400 Malus domestica HOM05D004852 ORTHO05D006128 2.5e-49 200.3 271 50.9
Prupe.8G136700 Prunus persica HOM05D004852 ORTHO05D006128 1.2e-32 144.8 86 79.1
RcHm_v2.0_Chr6g0254741 Rosa chinensis HOM05D004852 ORTHO05D006128 1.6e-32 144.4 189 49.7
CiPaw.05G012900 Carya illinoinensis HOM05D004852 ORTHO05D006128 8.3e-29 132.1 86 69.8
PGR142G1976 Punica granatum HOM05D004852 ORTHO05D006128 1.1e-28 131.7 86 70.9
Atru.chr5.2475 Acer truncatum HOM05D004852 ORTHO05D006128 1.4e-28 131.3 87 73.6
TWI79G0830 Tripterygium wilfordii HOM05D004852 ORTHO05D006128 1.8e-28 131.0 86 73.3
Migut.O00601 Erythranthe guttata HOM05D004852 ORTHO05D006128 3.1e-28 130.2 86 72.1
GSVIVG01037905001 Vitis vinifera HOM05D004852 ORTHO05D006128 4.1e-28 129.8 86 72.1
Oeu044275.2 Olea europaea HOM05D004852 ORTHO05D006128 7.0e-28 129.0 86 72.1
Cc02_g19340 Coffea canephora HOM05D004852 ORTHO05D006128 9.1e-28 128.6 86 72.1
Migut.N01158 Erythranthe guttata HOM05D004852 ORTHO05D006128 1.2e-27 128.3 86 72.1
HanXRQChr17g0570571 Helianthus annuus HOM05D004852 ORTHO05D006128 2.0e-27 127.5 86 70.9
Eucgr.I01096 Eucalyptus grandis HOM05D004852 ORTHO05D006128 2.7e-27 127.1 86 72.1
Ca_24346_v3 Cicer arietinum L. HOM05D004852 ORTHO05D006128 4.5e-27 126.3 86 69.8
Ciclev10027730m.g Citrus clementina HOM05D004852 ORTHO05D006128 4.5e-27 126.3 86 68.6
CsaV3_7G008100 Cucumis sativus L. HOM05D004852 ORTHO05D006128 4.5e-27 126.3 86 68.6
Dinv42201 Davidia involucrata HOM05D004852 ORTHO05D006128 4.5e-27 126.3 86 69.8
MELO3C005497.2 Cucumis melo HOM05D004852 ORTHO05D006128 5.9e-27 125.9 86 68.6
Sed0001586 Sechium edule HOM05D004852 ORTHO05D006128 5.9e-27 125.9 86 68.6
FAN15G1156 Fragaria x ananassa HOM05D004852 ORTHO05D006128 7.7e-27 125.6 184 47.3
Phvul.002G053200 Phaseolus vulgaris HOM05D004852 ORTHO05D006128 7.7e-27 125.6 86 70.9
SalBow3G4263 Salvia bowleyana HOM05D004852 ORTHO05D006128 7.7e-27 125.6 86 70.9
Manes.07G069666 Manihot esculenta HOM05D004852 ORTHO05D006128 1.0e-26 125.2 86 68.6
FvH4_2g04972 Fragaria vesca HOM05D004852 ORTHO05D006128 1.3e-26 124.8 184 46.7
Rhsim05G0088900 Rhododendron simsii HOM05D004852 ORTHO05D006128 1.3e-26 124.8 86 68.6
Nitab4.5_0004326g0020 Nicotiana tabacum HOM05D004852 ORTHO05D006128 1.7e-26 124.4 86 68.6
Actinidia05501 Actinidia chinensis HOM05D004852 ORTHO05D006128 2.3e-26 124.0 86 66.3
COL.COLO4_32578 Corchorus olitorius HOM05D004852 ORTHO05D006128 2.3e-26 124.0 86 72.1
Lj5A215G62 Lonicera japonica HOM05D004852 ORTHO05D006128 2.3e-26 124.0 86 68.6
Nn1g04670 Nelumbo nucifera HOM05D004852 ORTHO05D006128 2.3e-26 124.0 86 73.3
ECA236G4936 Erigeron canadensis HOM05D004852 ORTHO05D006128 3.8e-26 123.2 86 67.4
Potri.009G094400 Populus trichocarpa HOM05D004852 ORTHO05D006128 6.6e-26 122.5 86 66.3
QL11p033063 Quercus lobata HOM05D004852 ORTHO05D006128 6.6e-26 122.5 86 69.8
Sabra09G0072700 Salix brachista HOM05D004852 ORTHO05D006128 1.5e-25 121.3 86 66.3
AUR62010324 Chenopodium quinoa HOM05D004852 ORTHO05D006128 2.5e-25 120.6 86 66.3
AUR62039064 Chenopodium quinoa HOM05D004852 ORTHO05D006128 2.5e-25 120.6 86 66.3
Hma1.2p1_2341F.1_g320320 Hydrangea macrophylla HOM05D004852 ORTHO05D006128 2.5e-25 120.6 86 68.6
Hma1.2p1_2341F.1_g320330 Hydrangea macrophylla HOM05D004852 ORTHO05D006128 2.5e-25 120.6 86 68.6
vmacro19454 Vaccinium macrocarpon HOM05D004852 ORTHO05D006128 2.5e-25 120.6 86 66.3
Psat4g228520 Pisum sativum HOM05D004852 ORTHO05D006128 4.2e-25 119.8 86 67.4
EL10Ac9g22261 Beta vulgaris HOM05D004852 ORTHO05D006128 5.6e-25 119.4 86 64.0
Cpa.g.sc106.106 Carica papaya HOM05D004852 ORTHO05D006128 7.2e-25 119.0 86 66.3
Duzib205G0175 Durio zibethinus HOM05D004852 ORTHO05D006128 7.2e-25 119.0 86 68.6
Gohir.D13G043200 Gossypium hirsutum HOM05D004852 ORTHO05D006128 7.2e-25 119.0 90 67.8
Gorai.013G047900 Gossypium raimondii HOM05D004852 ORTHO05D006128 7.2e-25 119.0 90 67.8
Thecc.02G110100 Theobroma cacao HOM05D004852 ORTHO05D006128 7.2e-25 119.0 86 69.8
CANSAT25G3392 Cannabis sativa HOM05D004852 ORTHO05D006128 1.2e-24 118.2 86 67.4
Peaxi162Scf00016g02441 Petunia axillaris HOM05D004852 ORTHO05D006128 1.2e-24 118.2 86 66.3
Solyc01g107510.3 Solanum lycopersicum HOM05D004852 ORTHO05D006128 1.2e-24 118.2 86 66.3
Sopen01g049730 Solanum pennellii HOM05D004852 ORTHO05D006128 1.2e-24 118.2 86 66.3
Lsat_1_v5_gn_7_85781 Lactuca sativa HOM05D004852 ORTHO05D006128 1.6e-24 117.9 81 69.1
DCAR_029088 Daucus carota HOM05D004852 ORTHO05D006128 2.1e-24 117.5 86 64.0
Lalb_Chr09g0319581 Lupinus albus HOM05D004852 ORTHO05D006128 2.1e-24 117.5 86 64.0
Nitab4.5_0001143g0010 Nicotiana tabacum HOM05D004852 ORTHO05D006128 2.1e-24 117.5 86 66.3
PSO541G3304 Papaver somniferum HOM05D004852 ORTHO05D006128 2.1e-24 117.5 86 67.4
SGA_v2.0_scaffold106G30732 Striga asiatica HOM05D004852 ORTHO05D006128 2.1e-24 117.5 86 67.4
CSS0042044 Camellia sinensis var. sinensis HOM05D004852 ORTHO05D006128 2.8e-24 117.1 86 65.1
Sc18g0005570 Simmondsia chinensis HOM05D004852 ORTHO05D006128 3.6e-24 116.7 86 65.1
Carub.0008s0351 Capsella rubella HOM05D004852 ORTHO05D006128 4.7e-24 116.3 86 65.1
TAR376G0480 Trochodendron aralioides HOM05D004852 ORTHO05D006128 4.7e-24 116.3 86 66.3
CAN.G606.8 Capsicum annuum HOM05D004852 ORTHO05D006128 8.0e-24 115.5 86 66.3
Aqoxy6G02842 Aquilegia oxysepala HOM05D004852 ORTHO05D006128 1.4e-23 114.8 88 67.0
Glyma.01G243900 Glycine max HOM05D004852 ORTHO05D006128 1.8e-23 114.4 86 66.3
MBI16_g23720_MAGBIO Magnolia biondii HOM05D004852 ORTHO05D006128 1.8e-23 114.4 86 64.0
Gohir.A13G044100 Gossypium hirsutum HOM05D004852 ORTHO05D006128 2.3e-23 114.0 90 65.6
Medtr5g004960 Medicago truncatula HOM05D004852 ORTHO05D006128 2.3e-23 114.0 86 64.0
THA.LOC104812918 Tarenaya hassleriana HOM05D004852 ORTHO05D006128 2.3e-23 114.0 86 65.1
Sp2g09590 Schrenkiella parvula HOM05D004852 ORTHO05D006128 3.0e-23 113.6 86 64.0
AT5G44750 Arabidopsis thaliana HOM05D004852 ORTHO05D006128 4.0e-23 113.2 86 64.0
Lj1g0003104 Lotus japonicus HOM05D004852 ORTHO05D006128 4.0e-23 113.2 86 66.3
Thhalv10000766m.g Eutrema salsugineum HOM05D004852 ORTHO05D006128 8.9e-23 112.1 86 62.8
AL8G14780 Arabidopsis lyrata HOM05D004852 ORTHO05D006128 1.2e-22 111.7 86 64.0
ATR0205G027 Amborella trichopoda HOM05D004852 ORTHO05D006128 1.5e-22 111.3 86 61.6
unitig_26.g10234 Utricularia gibba HOM05D004852 ORTHO05D006128 1.5e-22 111.3 86 66.3
Rhsim05G0088800 Rhododendron simsii HOM05D004852 ORTHO05D006128 9.8e-22 108.6 86 60.5
Aa31LG9G8420 Aethionema arabicum HOM05D004852 ORTHO05D006128 1.3e-21 108.2 86 60.5
Hund06310 Selenicereus undatus HOM05D004852 ORTHO05D006128 2.2e-21 107.5 86 60.5
BolC7t43304H Brassica oleracea HOM05D004852 ORTHO05D006128 2.9e-21 107.1 86 66.3
arahy.Tifrunner.gnm1.ann1.F6JX6R Arachis hypogaea HOM05D004852 ORTHO05D006128 3.7e-21 106.7 86 62.8
arahy.Tifrunner.gnm1.ann1.9X93LG Arachis hypogaea HOM05D004852 ORTHO05D006128 6.4e-21 105.9 86 64.0
BcaNung07102 Brassica carinata HOM05D004852 ORTHO05D006128 8.3e-21 105.5 86 61.6
TPR.G21613 Trifolium pratense HOM05D004852 ORTHO05D006128 1.4e-20 104.8 84 63.1
BcaNung06822 Brassica carinata HOM05D004852 ORTHO05D006128 1.8e-20 104.4 86 64.0
C07p27720 Brassica napus HOM05D004852 ORTHO05D006128 1.8e-20 104.4 86 64.0
HPP92_016994 Vanilla planifolia HOM05D004852 ORTHO05D006128 2.4e-20 104.0 91 56.0
HPP92_017010 Vanilla planifolia HOM05D004852 ORTHO05D006128 2.4e-20 104.0 91 56.0
A06p46930 Brassica napus HOM05D004852 ORTHO05D006128 3.2e-20 103.6 86 64.0
BraA06t27566Z Brassica rapa HOM05D004852 ORTHO05D006128 3.2e-20 103.6 86 64.0
SEGI_21122 Sequoiadendron giganteum HOM05D004852 ORTHO05D006128 1.0e-18 98.6 100 53.0
ClCG02G006490 Citrullus lanatus HOM05D004852 ORTHO05D006128 2.3e-18 97.4 86 58.1
Zm00001eb226110 Zea mays HOM05D004852 ORTHO05D006128 1.5e-17 94.7 86 59.3
Os06g0691000 Oryza sativa ssp. japonica HOM05D004852 ORTHO05D006128 2.3e-15 87.4 86 57.0
AagrBONN_evm.TU.Sc2ySwM_228.1916 Anthoceros agrestis HOM05D004852 ORTHO05D006128 2.9e-13 80.5 106 43.4
Mapoly0216s0004 Marchantia polymorpha HOM05D004852 ORTHO05D006128 3.7e-13 80.1 75 54.7
SMO235G0070 Selaginella moellendorffii HOM05D004852 ORTHO05D006128 8.3e-13 79.0 94 46.8
Atru.chr3.2810 Acer truncatum HOM05D004852 ORTHO05D006128 1.4e-12 78.2 162 38.3
SMO347G0466 Selaginella moellendorffii HOM05D004852 ORTHO05D006128 5.4e-12 76.3 94 45.7
Pp3c22_4740 Physcomitrium patens HOM05D004852 ORTHO05D006128 1.2e-11 75.1 105 43.8
CDE01G0038 Ceratophyllum demersum HOM05D004852 ORTHO05D006128 6.0e-11 72.8 86 52.3
PGSC0003DMG403025764 Solanum tuberosum HOM05D004852 ORTHO05D006128 3.3e-09 67.0 175 31.4
TAR376G1059 Trochodendron aralioides HOM05D004852 ORTHO05D006128 5.6e-09 66.2 79 49.4
VMungo0251G0861 Vigna mungo HOM05D000344 ORTHO05D026217 9.5e-09 65.5 46 71.7
QL11p006896 Quercus lobata HOM05D003203 ORTHO05D003526 1.6e-08 64.7 55 58.2
QL11p006401 Quercus lobata HOM05D003203 ORTHO05D003526 2.1e-08 64.3 55 58.2
QL11p006907 Quercus lobata HOM05D003203 ORTHO05D003526 2.1e-08 64.3 55 58.2
Cre12.g550800 Chlamydomonas reinhardtii HOM05D004852 ORTHO05D006128 8.1e-08 62.4 80 43.8
Ah.01g018340 Amaranthus hybridus HOM05D004852 ORTHO05D006128 1.1e-07 62.0 39 71.8
Cpa.g.sc106.104 Carica papaya HOM05D004852 ORTHO05D006128 2.3e-07 60.8 105 41.0
Phvul.002G053400 Phaseolus vulgaris HOM05D004852 ORTHO05D006128 4.0e-07 60.1 70 52.9
CDE02G3140 Ceratophyllum demersum HOM05D004852 ORTHO05D006128 5.2e-07 59.7 34 76.5
Lalb_Chr09g0319571 Lupinus albus HOM05D004852 ORTHO05D006128 1.5e-06 58.2 102 39.2
Rhsim05G0100000 Rhododendron simsii HOM05D004852 ORTHO05D006128 2.0e-06 57.8 47 57.4
CARHR178150 Cardamine hirsuta HOM05D004852 ORTHO05D006128 5.8e-06 56.2 60 50.0
FvH4_1g23540 Fragaria vesca HOM05D004852 ORTHO05D025440 7.5e-06 55.8 47 63.8


User provided reference genes

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