Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1264600 Malus domestica HOM05D002276 ORTHO05D002381 3.4e-158 561.6 285 100.0
MD03G1264500 Malus domestica HOM05D002276 ORTHO05D002381 2.7e-126 455.7 234 98.7
MD11G1243600 Malus domestica HOM05D002276 ORTHO05D002381 9.1e-26 121.7 270 37.0
MD11G1285500 Malus domestica HOM05D002276 ORTHO05D002381 6.7e-21 105.5 124 47.6
MD11G1250500 Malus domestica HOM05D002276 ORTHO05D002381 6.3e-19 99.0 109 49.5
Lalb_Chr11g0067721 Lupinus albus HOM05D002276 ORTHO05D002381 1.2e-14 84.7 97 52.6
MD04G1039000 Malus domestica HOM05D002276 ORTHO05D002381 1.6e-14 84.3 92 52.2
Lj1g0009031 Lotus japonicus HOM05D002276 ORTHO05D002381 2.1e-14 84.0 97 51.5
Medtr3g093800 Medicago truncatula HOM05D002276 ORTHO05D002381 2.7e-14 83.6 123 40.7
TPR.G13982 Trifolium pratense HOM05D002276 ORTHO05D002381 2.7e-14 83.6 130 38.5
Lalb_Chr08g0239251 Lupinus albus HOM05D002276 ORTHO05D002381 6.1e-14 82.4 97 49.5
Prupe.2G265300 Prunus persica HOM05D002276 ORTHO05D002381 8.0e-14 82.0 116 41.4
Actinidia31634 Actinidia chinensis HOM05D002276 ORTHO05D002381 1.0e-13 81.6 97 45.4
arahy.Tifrunner.gnm1.ann1.AB1T8P Arachis hypogaea HOM05D002276 ORTHO05D002381 1.0e-13 81.6 109 45.0
arahy.Tifrunner.gnm1.ann1.XP7Q91 Arachis hypogaea HOM05D002276 ORTHO05D002381 1.0e-13 81.6 109 45.0
CDE04G0622 Ceratophyllum demersum HOM05D002276 ORTHO05D002381 1.0e-13 81.6 97 46.4
Ca_16859_v3 Cicer arietinum L. HOM05D002276 ORTHO05D002381 1.4e-13 81.3 111 44.1
Ca_29507_v3 Cicer arietinum L. HOM05D002276 ORTHO05D002381 1.4e-13 81.3 111 44.1
Glyma.04G223500 Glycine max HOM05D002276 ORTHO05D002381 1.4e-13 81.3 111 45.0
MD01G1169100 Malus domestica HOM05D002276 ORTHO05D002381 1.4e-13 81.3 97 46.4
VMungo1309G1834 Vigna mungo HOM05D002276 ORTHO05D002381 1.4e-13 81.3 97 49.5
CsaV3_6G002370 Cucumis sativus L. HOM05D002276 ORTHO05D002381 2.3e-13 80.5 97 46.4
Ciclev10024245m.g Citrus clementina HOM05D002276 ORTHO05D002381 3.0e-13 80.1 164 31.7
CANSAT56G0568 Cannabis sativa HOM05D002276 ORTHO05D002381 5.2e-13 79.3 100 49.0
Nn2g10273 Nelumbo nucifera HOM05D002276 ORTHO05D002381 5.2e-13 79.3 109 42.2
Glyma.06G141700 Glycine max HOM05D002276 ORTHO05D002381 8.8e-13 78.6 111 43.2
MD07G1235000 Malus domestica HOM05D002276 ORTHO05D002381 8.8e-13 78.6 97 45.4
ClCG11G005630 Citrullus lanatus HOM05D002276 ORTHO05D002381 1.2e-12 78.2 97 46.4
CiPaw.02G199100 Carya illinoinensis HOM05D002276 ORTHO05D002381 1.5e-12 77.8 99 46.5
TAR369G0520 Trochodendron aralioides HOM05D002276 ORTHO05D002381 2.0e-12 77.4 109 38.5
Psat5g069320 Pisum sativum HOM05D002276 ORTHO05D002381 2.6e-12 77.0 111 42.3
RcHm_v2.0_Chr1g0372471 Rosa chinensis HOM05D002276 ORTHO05D002381 2.6e-12 77.0 107 44.9
CiPaw.01G307200 Carya illinoinensis HOM05D002276 ORTHO05D002381 3.4e-12 76.6 97 44.3
MELO3C020014.2 Cucumis melo HOM05D002276 ORTHO05D002381 3.4e-12 76.6 97 45.4
Nn5g26830 Nelumbo nucifera HOM05D002276 ORTHO05D002381 4.4e-12 76.3 97 46.4
Phvul.009G042900 Phaseolus vulgaris HOM05D002276 ORTHO05D002381 4.4e-12 76.3 97 47.4
Cfa001198 Carpinus fangiana HOM05D002276 ORTHO05D002381 5.7e-12 75.9 99 47.5
Ciclev10024570m.g Citrus clementina HOM05D002276 ORTHO05D002381 5.7e-12 75.9 110 36.4
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 7.5e-12 75.5 122 37.7
Nitab4.5_0011372g0010 Nicotiana tabacum HOM05D002276 ORTHO05D002381 1.3e-11 74.7 97 40.2
Dinv16968 Davidia involucrata HOM05D002276 ORTHO05D002381 1.7e-11 74.3 97 46.4
CSS0013434 Camellia sinensis var. sinensis HOM05D002276 ORTHO05D002381 2.8e-11 73.6 111 39.6
Cpa.g.sc86.75 Carica papaya HOM05D002276 ORTHO05D002381 2.8e-11 73.6 97 42.3
CDE12G0219 Ceratophyllum demersum HOM05D002276 ORTHO05D002381 2.8e-11 73.6 97 41.2
Sed0009415 Sechium edule HOM05D002276 ORTHO05D002381 2.8e-11 73.6 97 44.3
CSS0028562 Camellia sinensis var. sinensis HOM05D002276 ORTHO05D002381 3.7e-11 73.2 97 42.3
Nitab4.5_0000171g0260 Nicotiana tabacum HOM05D002276 ORTHO05D002381 4.8e-11 72.8 97 40.2
CAN.G598.16 Capsicum annuum HOM05D002276 ORTHO05D002381 6.3e-11 72.4 97 41.2
Gohir.D02G003200 Gossypium hirsutum HOM05D002276 ORTHO05D002381 6.3e-11 72.4 97 43.3
TWI53G2065 Tripterygium wilfordii HOM05D002276 ORTHO05D002381 6.3e-11 72.4 109 37.6
CDE04G3441 Ceratophyllum demersum HOM05D002276 ORTHO05D002381 8.3e-11 72.0 97 41.2
Ciclev10011998m.g Citrus clementina HOM05D002276 ORTHO05D002381 8.3e-11 72.0 97 45.4
Ciclev10013356m.g Citrus clementina HOM05D002276 ORTHO05D002381 8.3e-11 72.0 97 45.4
Manes.08G170400 Manihot esculenta HOM05D002276 ORTHO05D002381 8.3e-11 72.0 109 37.6
Peaxi162Scf00167g01124 Petunia axillaris HOM05D002276 ORTHO05D002381 8.3e-11 72.0 97 43.3
QL08p065059 Quercus lobata HOM05D002276 ORTHO05D002381 8.3e-11 72.0 97 44.3
TAR623G1532 Trochodendron aralioides HOM05D002276 ORTHO05D002381 8.3e-11 72.0 97 41.2
Actinidia13640 Actinidia chinensis HOM05D002276 ORTHO05D002381 1.1e-10 71.6 97 42.3
ATR1127G212 Amborella trichopoda HOM05D002276 ORTHO05D002381 1.1e-10 71.6 95 47.4
FAN03G1243 Fragaria x ananassa HOM05D002276 ORTHO05D002381 1.1e-10 71.6 107 43.9
Sopen05g030730 Solanum pennellii HOM05D002276 ORTHO05D002381 1.1e-10 71.6 97 39.2
vmacro08945 Vaccinium macrocarpon HOM05D002276 ORTHO05D002381 1.1e-10 71.6 97 44.3
Ciclev10023605m.g Citrus clementina HOM05D002276 ORTHO05D002381 1.4e-10 71.2 97 39.2
Eucgr.A00774 Eucalyptus grandis HOM05D002276 ORTHO05D002381 1.4e-10 71.2 199 30.2
TWI77G0614 Tripterygium wilfordii HOM05D002276 ORTHO05D002381 1.4e-10 71.2 109 37.6
Eucgr.J00105 Eucalyptus grandis HOM05D002276 ORTHO05D002381 1.8e-10 70.9 101 40.6
Nitab4.5_0000375g0290 Nicotiana tabacum HOM05D002276 ORTHO05D002381 1.8e-10 70.9 97 39.2
Nitab4.5_0006356g0040 Nicotiana tabacum HOM05D002276 ORTHO05D002381 1.8e-10 70.9 97 40.2
Solyc05g052190.4 Solanum lycopersicum HOM05D002276 ORTHO05D002381 1.8e-10 70.9 97 39.2
Thecc.10G184700 Theobroma cacao HOM05D002276 ORTHO05D002381 1.8e-10 70.9 97 38.1
PSO384G2188 Papaver somniferum HOM05D002276 ORTHO05D002381 2.4e-10 70.5 97 40.2
COL.COLO4_19469 Corchorus olitorius HOM05D002276 ORTHO05D002381 3.1e-10 70.1 113 36.3
FvH4_7g26060 Fragaria vesca HOM05D002276 ORTHO05D002381 3.1e-10 70.1 107 43.0
FAN01G0935 Fragaria x ananassa HOM05D002276 ORTHO05D002381 3.1e-10 70.1 107 43.0
Gorai.005G003700 Gossypium raimondii HOM05D002276 ORTHO05D002381 3.1e-10 70.1 97 41.2
MBI15_g39393_MAGBIO Magnolia biondii HOM05D002276 ORTHO05D002381 3.1e-10 70.1 97 43.3
Thecc.04G150200 Theobroma cacao HOM05D002276 ORTHO05D002381 3.1e-10 70.1 97 42.3
vmacro20377 Vaccinium macrocarpon HOM05D002276 ORTHO05D002381 3.1e-10 70.1 97 43.3
CAN.G1229.11 Capsicum annuum HOM05D002276 ORTHO05D002381 4.1e-10 69.7 97 38.1
Manes.09G123400 Manihot esculenta HOM05D002276 ORTHO05D002381 4.1e-10 69.7 109 37.6
AUR62002430 Chenopodium quinoa HOM05D002276 ORTHO05D002381 5.3e-10 69.3 97 38.1
AUR62023758 Chenopodium quinoa HOM05D002276 ORTHO05D002381 5.3e-10 69.3 97 38.1
FAN10G0959 Fragaria x ananassa HOM05D002276 ORTHO05D002381 5.3e-10 69.3 107 43.0
FAN10G4373 Fragaria x ananassa HOM05D002276 ORTHO05D002381 5.3e-10 69.3 107 43.0
Gohir.D10G112700 Gossypium hirsutum HOM05D002276 ORTHO05D002381 5.3e-10 69.3 97 41.2
Gorai.011G124500 Gossypium raimondii HOM05D002276 ORTHO05D002381 5.3e-10 69.3 97 41.2
PGR044G1486 Punica granatum HOM05D002276 ORTHO05D002381 5.3e-10 69.3 101 39.6
MBI03_g05806_MAGBIO Magnolia biondii HOM05D002276 ORTHO05D002381 7.0e-10 68.9 99 43.4
ECA238G3222 Erigeron canadensis HOM05D002276 ORTHO05D002381 9.1e-10 68.6 97 36.1
Peaxi162Scf00073g02341 Petunia axillaris HOM05D002276 ORTHO05D002381 9.1e-10 68.6 97 38.1
Sopen03g025650 Solanum pennellii HOM05D002276 ORTHO05D002381 9.1e-10 68.6 98 38.8
Ah.05g171950 Amaranthus hybridus HOM05D002276 ORTHO05D002381 1.2e-09 68.2 97 38.1
Cfa021026 Carpinus fangiana HOM05D002276 ORTHO05D002381 1.2e-09 68.2 117 36.8
Solyc03g095720.3 Solanum lycopersicum HOM05D002276 ORTHO05D002381 1.2e-09 68.2 98 38.8
FAN06G2672 Fragaria x ananassa HOM05D002276 ORTHO05D002381 1.6e-09 67.8 107 42.1
Gohir.A10G153500 Gossypium hirsutum HOM05D002276 ORTHO05D002381 1.6e-09 67.8 97 40.2
HanXRQChr09g0252621 Helianthus annuus HOM05D002276 ORTHO05D002381 1.6e-09 67.8 98 36.7
Lsat_1_v5_gn_9_60240 Lactuca sativa HOM05D002276 ORTHO05D002381 1.6e-09 67.8 109 34.9
PSO339G3554 Papaver somniferum HOM05D002276 ORTHO05D002381 1.6e-09 67.8 97 39.2
Potri.016G138100 Populus trichocarpa HOM05D002276 ORTHO05D002381 1.6e-09 67.8 97 42.3
QL10p023509 Quercus lobata HOM05D002276 ORTHO05D002381 1.6e-09 67.8 97 44.3
QL10p023527 Quercus lobata HOM05D002276 ORTHO05D002381 1.6e-09 67.8 97 44.3
QL10p023558 Quercus lobata HOM05D002276 ORTHO05D002381 1.6e-09 67.8 97 44.3
QL10p023700 Quercus lobata HOM05D002276 ORTHO05D002381 1.6e-09 67.8 97 44.3
Lj8C53T13 Lonicera japonica HOM05D002276 ORTHO05D002381 2.0e-09 67.4 97 39.2
PGSC0003DMG400011644 Solanum tuberosum HOM05D002276 ORTHO05D002381 2.0e-09 67.4 84 41.7
Cc02_g05240 Coffea canephora HOM05D002276 ORTHO05D002381 2.7e-09 67.0 120 34.2
Sc14g0005650 Simmondsia chinensis HOM05D002276 ORTHO05D002381 2.7e-09 67.0 97 36.1
Ciclev10013550m.g Citrus clementina HOM05D002276 ORTHO05D002381 3.5e-09 66.6 98 40.8
Ciclev10013888m.g Citrus clementina HOM05D002276 ORTHO05D002381 3.5e-09 66.6 98 40.8
ECA232G0035 Erigeron canadensis HOM05D002276 ORTHO05D002381 3.5e-09 66.6 97 36.1
Rhsim05G0231600 Rhododendron simsii HOM05D002276 ORTHO05D002381 3.5e-09 66.6 96 41.7
DCAR_025300 Daucus carota HOM05D002276 ORTHO05D002381 4.5e-09 66.2 97 40.2
Manes.10G002900 Manihot esculenta HOM05D002276 ORTHO05D002381 4.5e-09 66.2 86 44.2
Hund22971 Selenicereus undatus HOM05D002276 ORTHO05D002381 4.5e-09 66.2 97 36.1
Cfa020347 Carpinus fangiana HOM05D002276 ORTHO05D002381 5.9e-09 65.9 103 39.8
Oeu008104.2 Olea europaea HOM05D002276 ORTHO05D002381 5.9e-09 65.9 98 41.8
PGSC0003DMG400020602 Solanum tuberosum HOM05D002276 ORTHO05D002381 5.9e-09 65.9 98 37.8
Aqoxy4G03275 Aquilegia oxysepala HOM05D002276 ORTHO05D002381 7.7e-09 65.5 90 40.0
Carub.0004s2055 Capsella rubella HOM05D002276 ORTHO05D002381 7.7e-09 65.5 97 41.2
Ciclev10004043m.g Citrus clementina HOM05D002276 ORTHO05D002381 7.7e-09 65.5 98 42.9
Gohir.A02G002850 Gossypium hirsutum HOM05D002276 ORTHO05D002381 7.7e-09 65.5 109 36.7
Haze_09331 Corylus avellana HOM05D002276 ORTHO05D002381 1.3e-08 64.7 103 38.8
Aa31LG5G23370 Aethionema arabicum HOM05D002276 ORTHO05D002381 1.7e-08 64.3 97 40.2
AL4G35840 Arabidopsis lyrata HOM05D002276 ORTHO05D002381 1.7e-08 64.3 97 41.2
AT2G38560 Arabidopsis thaliana HOM05D002276 ORTHO05D002381 1.7e-08 64.3 97 40.2
Haze_09690 Corylus avellana HOM05D002276 ORTHO05D002381 1.7e-08 64.3 104 39.4
QL10p023517 Quercus lobata HOM05D002276 ORTHO05D002381 1.7e-08 64.3 97 43.3
QL10p023539 Quercus lobata HOM05D002276 ORTHO05D002381 1.7e-08 64.3 97 43.3
QL10p023688 Quercus lobata HOM05D002276 ORTHO05D002381 1.7e-08 64.3 97 43.3
QL10p023709 Quercus lobata HOM05D002276 ORTHO05D002381 1.7e-08 64.3 97 43.3
Sabra06G0022900 Salix brachista HOM05D002276 ORTHO05D002381 1.7e-08 64.3 97 40.2
Haze_09396 Corylus avellana HOM05D002276 ORTHO05D002381 2.2e-08 63.9 103 38.8
QL10p023546 Quercus lobata HOM05D002276 ORTHO05D002381 2.2e-08 63.9 97 41.2
HPP92_022864 Vanilla planifolia HOM05D002276 ORTHO05D002381 2.9e-08 63.5 201 29.9
Atru.chr6.2101 Acer truncatum HOM05D002276 ORTHO05D002381 3.8e-08 63.2 104 36.5
Cfa020348 Carpinus fangiana HOM05D002276 ORTHO05D002381 3.8e-08 63.2 103 37.9
Sabra16G0036000 Salix brachista HOM05D002276 ORTHO05D002381 3.8e-08 63.2 97 39.2
Haze_13096 Corylus avellana HOM05D002276 ORTHO05D002381 5.0e-08 62.8 102 38.2
Ciclev10013972m.g Citrus clementina HOM05D002276 ORTHO05D002381 6.5e-08 62.4 98 38.8
Atru.chr12.198 Acer truncatum HOM05D002276 ORTHO05D002381 8.5e-08 62.0 83 41.0
Cpa.g.sc6.370 Carica papaya HOM05D002276 ORTHO05D002381 8.5e-08 62.0 111 36.9
DCAR_020154 Daucus carota HOM05D002276 ORTHO05D002381 8.5e-08 62.0 135 30.4
Ciclev10013562m.g Citrus clementina HOM05D002276 ORTHO05D002381 1.5e-07 61.2 98 36.7
Ciclev10013633m.g Citrus clementina HOM05D002276 ORTHO05D002381 1.5e-07 61.2 98 36.7
QL05p062213 Quercus lobata HOM05D002276 ORTHO05D002381 1.5e-07 61.2 97 42.3
QL10p004232 Quercus lobata HOM05D002276 ORTHO05D002381 1.5e-07 61.2 97 42.3
CARHR133240 Cardamine hirsuta HOM05D002276 ORTHO05D002381 1.9e-07 60.8 99 39.4
Ciclev10003866m.g Citrus clementina HOM05D002276 ORTHO05D002381 2.5e-07 60.5 99 37.4
Ciclev10013790m.g Citrus clementina HOM05D002276 ORTHO05D002381 3.2e-07 60.1 93 39.8
Migut.F00569 Erythranthe guttata HOM05D002276 ORTHO05D002381 3.2e-07 60.1 98 36.7
QL10p000746 Quercus lobata HOM05D002276 ORTHO05D002381 4.2e-07 59.7 97 40.2
Cfa020614 Carpinus fangiana HOM05D002276 ORTHO05D002381 5.5e-07 59.3 101 36.6
HanXRQChr07g0205051 Helianthus annuus HOM05D002276 ORTHO05D002381 5.5e-07 59.3 73 39.7
HanXRQChr08g0216851 Helianthus annuus HOM05D002276 ORTHO05D002381 5.5e-07 59.3 73 39.7
Atru.chr6.2102 Acer truncatum HOM05D002276 ORTHO05D002381 7.2e-07 58.9 104 32.7
QL10p022116 Quercus lobata HOM05D002276 ORTHO05D002381 7.2e-07 58.9 97 40.2
Os07g0229700 Oryza sativa ssp. japonica HOM05D002276 ORTHO05D002381 9.4e-07 58.5 107 37.4
Zm00001eb062210 Zea mays HOM05D002276 ORTHO05D002381 9.4e-07 58.5 108 37.0
Zm00001eb440670 Zea mays HOM05D002276 ORTHO05D002381 9.4e-07 58.5 108 37.0
Lj1C968T6 Lonicera japonica HOM05D002276 ORTHO05D002381 1.2e-06 58.2 97 34.0
Ciclev10004051m.g Citrus clementina HOM05D002276 ORTHO05D002381 2.1e-06 57.4 98 38.8
Lsat_1_v5_gn_2_126800 Lactuca sativa HOM05D002276 ORTHO05D002381 2.1e-06 57.4 71 39.4
Ciclev10024181m.g Citrus clementina HOM05D002276 ORTHO05D002381 2.7e-06 57.0 78 42.3
Os03g0815900 Oryza sativa ssp. japonica HOM05D002276 ORTHO05D002381 2.7e-06 57.0 90 37.8
BcaB02g09184 Brassica carinata HOM05D002276 ORTHO05D002381 3.6e-06 56.6 97 38.1
BcaC02g12009 Brassica carinata HOM05D002276 ORTHO05D002381 3.6e-06 56.6 97 38.1
A05p07490 Brassica napus HOM05D002276 ORTHO05D002381 3.6e-06 56.6 97 38.1
C04p08970 Brassica napus HOM05D002276 ORTHO05D002381 3.6e-06 56.6 97 38.1
BolC4t22486H Brassica oleracea HOM05D002276 ORTHO05D002381 3.6e-06 56.6 97 38.1
BraA05t19714Z Brassica rapa HOM05D002276 ORTHO05D002381 3.6e-06 56.6 97 38.1
Hund27145 Selenicereus undatus HOM05D002276 ORTHO05D002381 3.6e-06 56.6 169 29.0
BcaC01g05530 Brassica carinata HOM05D002276 ORTHO05D002381 4.7e-06 56.2 97 39.2
A03p21380 Brassica napus HOM05D002276 ORTHO05D002381 4.7e-06 56.2 97 39.2
C03p25250 Brassica napus HOM05D002276 ORTHO05D002381 4.7e-06 56.2 97 39.2
BolC3t14919H Brassica oleracea HOM05D002276 ORTHO05D002381 4.7e-06 56.2 97 39.2
BraA03t11373Z Brassica rapa HOM05D002276 ORTHO05D002381 4.7e-06 56.2 97 39.2
Cpa.g.sc736.3 Carica papaya HOM05D002276 ORTHO05D002381 4.7e-06 56.2 97 40.2
Atru.chr8.942 Acer truncatum HOM05D002276 ORTHO05D002381 6.1e-06 55.8 76 39.5
AagrBONN_evm.TU.Sc2ySwM_228.3587 Anthoceros agrestis HOM05D007284 ORTHO05D009303 6.1e-06 55.8 129 32.6
AT2G42725 Arabidopsis thaliana HOM05D002276 ORTHO05D002381 6.1e-06 55.8 117 34.2
Actinidia20794 Actinidia chinensis HOM05D002276 ORTHO05D002381 8.0e-06 55.5 73 43.8


User provided reference genes

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