Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1111500 Malus domestica HOM05D003658 ORTHO05D004457 2.4e-145 518.8 268 100.0
MD11G1125100 Malus domestica HOM05D003658 ORTHO05D004457 1.7e-138 496.1 268 94.8
Prupe.6G093800 Prunus persica HOM05D003658 ORTHO05D004457 2.3e-135 485.7 268 91.8
RcHm_v2.0_Chr2g0124141 Rosa chinensis HOM05D003658 ORTHO05D004457 3.5e-128 461.8 268 86.9
RcHm_v2.0_Chr7g0219181 Rosa chinensis HOM05D003658 ORTHO05D004457 4.5e-128 461.5 268 86.9
FvH4_1g25660 Fragaria vesca HOM05D003658 ORTHO05D004457 1.0e-127 460.3 268 86.9
FAN26G3193 Fragaria x ananassa HOM05D003658 ORTHO05D004457 1.0e-127 460.3 268 86.9
FAN28G2851 Fragaria x ananassa HOM05D003658 ORTHO05D004457 1.0e-127 460.3 268 86.9
CANSAT35G1266 Cannabis sativa HOM05D003658 ORTHO05D004457 6.8e-124 447.6 265 85.7
Eucgr.F04457 Eucalyptus grandis HOM05D003658 ORTHO05D004457 1.4e-121 439.9 269 81.0
Cpa.g.sc81.16 Carica papaya HOM05D003658 ORTHO05D004457 1.3e-119 433.3 266 82.0
Gohir.A01G060300 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.7e-119 433.0 268 80.6
Gohir.D01G046800 Gossypium hirsutum HOM05D003658 ORTHO05D004457 3.0e-119 432.2 268 80.6
Thecc.07G099900 Theobroma cacao HOM05D003658 ORTHO05D004457 1.1e-118 430.3 268 80.2
Gorai.002G066300 Gossypium raimondii HOM05D003658 ORTHO05D004457 1.5e-118 429.9 268 80.2
CSS0000103 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.9e-118 429.5 268 79.9
Nn2g10669 Nelumbo nucifera HOM05D003658 ORTHO05D004457 4.3e-118 428.3 268 78.7
Nn2g13001 Nelumbo nucifera HOM05D003658 ORTHO05D004457 5.6e-118 427.9 265 79.6
CSS0002392 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 9.5e-118 427.2 268 79.5
Ciclev10027703m.g Citrus clementina HOM05D003658 ORTHO05D004457 9.5e-118 427.2 268 79.5
TAR623G0185 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.6e-117 426.4 268 76.9
TAR369G0890 Trochodendron aralioides HOM05D003658 ORTHO05D004457 2.1e-117 426.0 268 76.9
Dinv32798 Davidia involucrata HOM05D003658 ORTHO05D004457 4.7e-117 424.9 268 79.5
PGR031G3879 Punica granatum HOM05D003658 ORTHO05D004457 4.7e-117 424.9 269 79.6
COL.COLO4_32786 Corchorus olitorius HOM05D003658 ORTHO05D004457 6.2e-117 424.5 262 80.5
Duzib213G0488 Durio zibethinus HOM05D003658 ORTHO05D004457 6.2e-117 424.5 268 79.5
Nn3g19734 Nelumbo nucifera HOM05D003658 ORTHO05D004457 6.2e-117 424.5 268 77.6
QL01p036935 Quercus lobata HOM05D003658 ORTHO05D004457 8.0e-117 424.1 267 80.5
Cfa011371 Carpinus fangiana HOM05D003658 ORTHO05D004457 3.1e-116 422.2 268 79.1
Duzib170G0243 Durio zibethinus HOM05D003658 ORTHO05D004457 5.2e-116 421.4 268 79.1
CiPaw.13G106400 Carya illinoinensis HOM05D003658 ORTHO05D004457 8.9e-116 420.6 268 79.5
EL10Ac1g00972 Beta vulgaris HOM05D003658 ORTHO05D004457 1.2e-115 420.2 264 78.8
Haze_23933 Corylus avellana HOM05D003658 ORTHO05D004457 2.6e-115 419.1 268 78.7
TWI75G0848 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 2.6e-115 419.1 268 77.6
Peaxi162Scf00072g00510 Petunia axillaris HOM05D003658 ORTHO05D004457 3.4e-115 418.7 265 79.6
CsaV3_7G021350 Cucumis sativus L. HOM05D003658 ORTHO05D004457 5.8e-115 417.9 264 78.8
Dinv14501 Davidia involucrata HOM05D003658 ORTHO05D004457 1.7e-114 416.4 264 78.8
Sed0019661 Sechium edule HOM05D003658 ORTHO05D004457 2.2e-114 416.0 264 79.5
DCAR_016522 Daucus carota HOM05D003658 ORTHO05D004457 6.4e-114 414.5 267 78.3
Atru.chr3.3712 Acer truncatum HOM05D003658 ORTHO05D004457 8.3e-114 414.1 267 77.2
Lj4A607T48 Lonicera japonica HOM05D003658 ORTHO05D004457 1.4e-113 413.3 267 77.9
Rhsim01G0220800 Rhododendron simsii HOM05D003658 ORTHO05D004457 1.4e-113 413.3 268 75.7
Potri.010G023100 Populus trichocarpa HOM05D003658 ORTHO05D004457 1.9e-113 412.9 268 76.1
CAN.G1001.11 Capsicum annuum HOM05D003658 ORTHO05D004457 2.4e-113 412.5 265 77.4
ClCG09G021680 Citrullus lanatus HOM05D003658 ORTHO05D004457 3.2e-113 412.1 261 78.9
MELO3C013218.2 Cucumis melo HOM05D003658 ORTHO05D004457 3.2e-113 412.1 264 77.7
Solyc06g075340.4 Solanum lycopersicum HOM05D003658 ORTHO05D004457 4.1e-113 411.8 266 76.3
Hund30148 Selenicereus undatus HOM05D003658 ORTHO05D004457 7.0e-113 411.0 266 77.4
Hund30149 Selenicereus undatus HOM05D003658 ORTHO05D004457 7.0e-113 411.0 266 77.4
Manes.04G025400 Manihot esculenta HOM05D003658 ORTHO05D004457 9.2e-113 410.6 268 74.6
BcaC05g27003 Brassica carinata HOM05D003658 ORTHO05D004457 1.2e-112 410.2 254 81.1
A09p36600 Brassica napus HOM05D003658 ORTHO05D004457 1.2e-112 410.2 254 81.1
C05p28660 Brassica napus HOM05D003658 ORTHO05D004457 1.2e-112 410.2 254 81.1
BolC5t31587H Brassica oleracea HOM05D003658 ORTHO05D004457 1.2e-112 410.2 254 81.1
BraA09t39180Z Brassica rapa HOM05D003658 ORTHO05D004457 1.2e-112 410.2 254 81.1
AUR62033373 Chenopodium quinoa HOM05D003658 ORTHO05D004457 1.2e-112 410.2 264 77.7
Nitab4.5_0010336g0040 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.2e-112 410.2 265 77.7
CSS0048503 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.6e-112 409.8 268 75.7
Nitab4.5_0000106g0020 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.6e-112 409.8 265 77.0
Nitab4.5_0010960g0010 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.6e-112 409.8 265 77.4
PGSC0003DMG400007504 Solanum tuberosum HOM05D003658 ORTHO05D004457 1.6e-112 409.8 265 76.6
THA.LOC104800615 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 2.7e-112 409.1 251 81.7
Sabra10G0015500 Salix brachista HOM05D003658 ORTHO05D004457 3.5e-112 408.7 268 75.4
BcaB07g32573 Brassica carinata HOM05D003658 ORTHO05D004457 4.6e-112 408.3 254 80.7
Oeu046772.1 Olea europaea HOM05D003658 ORTHO05D004457 4.6e-112 408.3 268 76.9
Sp1g25780 Schrenkiella parvula HOM05D003658 ORTHO05D004457 4.6e-112 408.3 252 81.7
Sopen06g031760 Solanum pennellii HOM05D003658 ORTHO05D004457 4.6e-112 408.3 265 75.8
AT1G29900 Arabidopsis thaliana HOM05D003658 ORTHO05D004457 6.0e-112 407.9 252 81.7
MSTRG.22380 Avicennia marina HOM05D003658 ORTHO05D004457 6.0e-112 407.9 266 76.3
CSS0031195 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 6.0e-112 407.9 268 75.4
Cc10_g16400 Coffea canephora HOM05D003658 ORTHO05D004457 6.0e-112 407.9 267 75.7
AUR62004284 Chenopodium quinoa HOM05D003658 ORTHO05D004457 7.8e-112 407.5 264 76.9
Actinidia03749 Actinidia chinensis HOM05D003658 ORTHO05D004457 1.0e-111 407.1 268 74.6
Thhalv10006598m.g Eutrema salsugineum HOM05D003658 ORTHO05D004457 1.0e-111 407.1 249 82.3
CARHR029540 Cardamine hirsuta HOM05D003658 ORTHO05D004457 1.3e-111 406.8 249 81.1
THA.LOC104826356 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 1.3e-111 406.8 265 77.7
TWI31G0613 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 1.7e-111 406.4 266 75.6
Aqoxy7G00983 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 2.3e-111 406.0 256 77.3
Aa31LG4G17270 Aethionema arabicum HOM05D003658 ORTHO05D004457 3.9e-111 405.2 256 78.9
SalBow6G4004 Salvia bowleyana HOM05D003658 ORTHO05D004457 3.9e-111 405.2 266 75.9
Ah.05g175890 Amaranthus hybridus HOM05D003658 ORTHO05D004457 6.6e-111 404.4 264 76.9
AL1G43750 Arabidopsis lyrata HOM05D003658 ORTHO05D004457 6.6e-111 404.4 252 81.3
Lalb_Chr24g0394441 Lupinus albus HOM05D003658 ORTHO05D004457 6.6e-111 404.4 253 79.4
MBI17_g19523_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 2.5e-110 402.5 256 77.3
Sed0011385 Sechium edule HOM05D003658 ORTHO05D004457 2.5e-110 402.5 248 80.2
Lsat_1_v5_gn_9_7920 Lactuca sativa HOM05D003658 ORTHO05D004457 3.3e-110 402.1 268 75.4
Migut.N03234 Erythranthe guttata HOM05D003658 ORTHO05D004457 4.3e-110 401.7 267 74.9
vmacro14471 Vaccinium macrocarpon HOM05D003658 ORTHO05D004457 4.3e-110 401.7 268 73.5
ECA234G0865 Erigeron canadensis HOM05D003658 ORTHO05D004457 4.7e-109 398.3 268 73.9
Carub.0001s2812 Capsella rubella HOM05D003658 ORTHO05D004457 6.2e-109 397.9 249 80.3
Glyma.15G045100 Glycine max HOM05D003658 ORTHO05D004457 6.2e-109 397.9 251 78.9
Lalb_Chr14g0374811 Lupinus albus HOM05D003658 ORTHO05D004457 1.4e-108 396.7 253 77.9
Glyma.13G328600 Glycine max HOM05D003658 ORTHO05D004457 6.8e-108 394.4 253 78.3
PSO782G2702 Papaver somniferum HOM05D003658 ORTHO05D004457 8.9e-108 394.0 249 77.9
VMungo1080G1458 Vigna mungo HOM05D003658 ORTHO05D004457 1.2e-107 393.7 253 77.1
Phvul.005G137400 Phaseolus vulgaris HOM05D003658 ORTHO05D004457 3.4e-107 392.1 249 77.9
Lj3g0017853 Lotus japonicus HOM05D003658 ORTHO05D004457 4.4e-107 391.7 253 77.5
HanXRQChr09g0251621 Helianthus annuus HOM05D003658 ORTHO05D004457 5.8e-107 391.3 251 76.1
CDE08G0949 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 7.5e-107 391.0 249 75.5
Lalb_Chr22g0350161 Lupinus albus HOM05D003658 ORTHO05D004457 7.5e-107 391.0 253 76.3
SGA_v2.0_scaffold19G08651 Striga asiatica HOM05D003658 ORTHO05D004457 1.3e-106 390.2 266 72.9
ATR0561G124 Amborella trichopoda HOM05D003658 ORTHO05D004457 2.2e-106 389.4 249 75.9
Ca_01436_v3 Cicer arietinum L. HOM05D003658 ORTHO05D004457 2.2e-106 389.4 253 76.3
Medtr2g093280 Medicago truncatula HOM05D003658 ORTHO05D004457 2.9e-106 389.0 251 76.9
MSTRG.24196 Avicennia marina HOM05D003658 ORTHO05D004457 8.3e-106 387.5 267 73.4
GSVIVG01025125001 Vitis vinifera HOM05D003658 ORTHO05D004457 1.1e-105 387.1 230 81.3
TPR.G11612 Trifolium pratense HOM05D003658 ORTHO05D004457 1.4e-105 386.7 253 76.7
unitig_8.g4304 Utricularia gibba HOM05D003658 ORTHO05D004457 5.4e-105 384.8 247 77.7
HPP92_005503 Vanilla planifolia HOM05D003658 ORTHO05D004457 9.2e-105 384.0 260 71.5
arahy.Tifrunner.gnm1.ann1.HT4L1Y Arachis hypogaea HOM05D003658 ORTHO05D004457 1.2e-104 383.6 249 77.1
arahy.Tifrunner.gnm1.ann1.Z66RMF Arachis hypogaea HOM05D003658 ORTHO05D004457 1.2e-104 383.6 249 77.1
DCAR_026092 Daucus carota HOM05D003658 ORTHO05D004457 2.7e-104 382.5 257 75.1
Sc12g0008310 Simmondsia chinensis HOM05D003658 ORTHO05D004457 4.6e-104 381.7 268 74.3
Psat5g277200 Pisum sativum HOM05D003658 ORTHO05D004457 6.0e-104 381.3 253 75.5
HanXRQChr15g0493841 Helianthus annuus HOM05D003658 ORTHO05D004457 3.0e-103 379.0 252 73.8
arahy.Tifrunner.gnm1.ann1.1XIG7Z Arachis hypogaea HOM05D003658 ORTHO05D004457 3.9e-103 378.6 249 76.7
arahy.Tifrunner.gnm1.ann1.F0P9EH Arachis hypogaea HOM05D003658 ORTHO05D004457 6.6e-103 377.9 249 76.7
arahy.Tifrunner.gnm1.ann1.SY27G3 Arachis hypogaea HOM05D003658 ORTHO05D004457 1.5e-102 376.7 249 76.7
Pp3c2_19430 Physcomitrium patens HOM05D003658 ORTHO05D004457 8.1e-101 370.9 253 71.9
Zm00001eb356970 Zea mays HOM05D003658 ORTHO05D004457 3.1e-100 369.0 249 73.1
Zm00001eb160030 Zea mays HOM05D003658 ORTHO05D004457 5.2e-100 368.2 249 73.5
SMO116G0226 Selaginella moellendorffii HOM05D003658 ORTHO05D004457 8.9e-100 367.5 265 69.8
Os01g0570700 Oryza sativa ssp. japonica HOM05D003658 ORTHO05D004457 1.2e-99 367.1 249 72.7
SHI06033 Sapria himalayana HOM05D003658 ORTHO05D004457 2.2e-98 362.8 249 71.5
Oeu047812.2 Olea europaea HOM05D003658 ORTHO05D004457 1.6e-96 356.7 247 72.9
Mapoly0126s0034 Marchantia polymorpha HOM05D003658 ORTHO05D004457 2.3e-95 352.8 252 67.9
AagrBONN_evm.TU.Sc2ySwM_228.578 Anthoceros agrestis HOM05D003658 ORTHO05D004457 8.7e-95 350.9 248 70.6
CDE02G3705 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 8.1e-93 344.4 221 74.7
CBR_g16075 Chara braunii HOM05D003658 ORTHO05D004457 1.1e-92 344.0 248 67.3
Actinidia24075 Actinidia chinensis HOM05D003658 ORTHO05D004457 8.4e-90 334.3 215 76.3
Pp3c1_18250 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.1e-84 317.4 214 73.4
arahy.Tifrunner.gnm1.ann1.YNZQ4S Arachis hypogaea HOM05D003658 ORTHO05D004457 1.1e-81 307.4 249 66.7
Nitab4.5_0000816g0110 Nicotiana tabacum HOM05D003658 ORTHO05D004457 3.9e-79 298.9 218 69.7
MCO07G210 Micromonas commoda HOM05D003658 ORTHO05D004457 1.6e-77 293.5 248 57.7
PRCOL_00001523 Prasinoderma coloniale HOM05D003658 ORTHO05D004457 9.0e-76 287.7 250 56.0
Lj4C607T5 Lonicera japonica HOM05D003658 ORTHO05D004457 8.4e-74 281.2 260 59.6
Cre08.g358580 Chlamydomonas reinhardtii HOM05D003658 ORTHO05D004457 2.1e-72 276.6 249 55.4
Glyma.20G148741 Glycine max HOM05D003658 ORTHO05D004457 4.9e-66 255.4 157 81.5
Potri.008G216501 Populus trichocarpa HOM05D003658 ORTHO05D004457 4.6e-56 222.2 182 66.5
Peaxi162Scf00809g00429 Petunia axillaris HOM05D003658 ORTHO05D004457 2.2e-53 213.4 222 54.1
Haze_26812 Corylus avellana HOM05D003658 ORTHO05D004457 1.5e-51 207.2 241 45.6
MBI17_g43655_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 1.7e-50 203.8 114 84.2
Sc12g0005790 Simmondsia chinensis HOM05D003658 ORTHO05D004457 2.3e-47 193.4 143 72.0
TAR633G2601 Trochodendron aralioides HOM05D003658 ORTHO05D004457 5.0e-42 175.6 98 82.7
BcaC03g16660 Brassica carinata HOM05D003658 ORTHO05D004457 1.8e-36 157.1 161 56.5
MBI17_g43656_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 2.6e-35 153.3 111 68.5
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.1e-32 143.7 245 35.9
C05p22330 Brassica napus HOM05D003658 ORTHO05D004457 5.5e-25 119.0 94 64.9
Aqoxy7G00992 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 8.3e-21 105.1 66 77.3
BcaC03g16789 Brassica carinata HOM05D003658 ORTHO05D004457 4.0e-15 86.3 74 62.2
Duzib168G1597 Durio zibethinus HOM05D003658 ORTHO05D004457 8.9e-15 85.1 131 39.7
BolC2t10717H Brassica oleracea HOM05D003658 ORTHO05D004457 5.7e-14 82.4 71 62.0
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 1.0e-10 71.6 150 32.7
TAR633G1433 Trochodendron aralioides HOM05D003658 ORTHO05D004457 6.6e-10 68.9 38 84.2
Peaxi162Scf00809g00417 Petunia axillaris HOM05D003658 ORTHO05D004457 5.6e-09 65.9 35 85.7
Zm00001eb440860 Zea mays HOM05D003658 ORTHO05D004457 6.1e-08 62.4 115 33.9
MD03G1111400 Malus domestica HOM05D003658 ORTHO05D004457 1.4e-07 61.2 115 34.8
Actinidia07110 Actinidia chinensis HOM05D003658 ORTHO05D004457 2.3e-07 60.5 222 28.8


User provided reference genes

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