Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1026800 Malus domestica HOM05D001724 ORTHO05D002973 2.4e-240 835.1 423 100.0
MD11G1030900 Malus domestica HOM05D001724 ORTHO05D002973 1.6e-191 672.9 520 70.8
RcHm_v2.0_Chr5g0077021 Rosa chinensis HOM05D001724 ORTHO05D002973 1.9e-157 559.7 519 59.9
Prupe.6G024200 Prunus persica HOM05D001724 ORTHO05D002973 7.4e-157 557.8 475 63.8
FvH4_3g42970 Fragaria vesca HOM05D001724 ORTHO05D002973 4.3e-149 531.9 520 56.2
FAN21G0081 Fragaria x ananassa HOM05D001724 ORTHO05D002973 5.6e-149 531.6 520 56.3
FAN25G1954 Fragaria x ananassa HOM05D001724 ORTHO05D002973 2.6e-146 522.7 520 55.8
FAN11G2634 Fragaria x ananassa HOM05D001724 ORTHO05D002973 7.6e-146 521.2 511 56.6
FAN16G1447 Fragaria x ananassa HOM05D001724 ORTHO05D002973 1.7e-145 520.0 520 54.8
QL08p003988 Quercus lobata HOM05D001724 ORTHO05D002973 5.5e-144 515.0 518 55.0
Cfa020185 Carpinus fangiana HOM05D001724 ORTHO05D007284 7.4e-133 478.0 518 52.3
QL08p003981 Quercus lobata HOM05D001724 ORTHO05D002973 9.7e-133 477.6 491 54.8
Haze_09833 Corylus avellana HOM05D001724 ORTHO05D002973 1.7e-129 466.8 374 65.0
Atru.chr2.3696 Acer truncatum HOM05D001724 ORTHO05D002973 3.2e-128 462.6 519 50.1
Dinv10340 Davidia involucrata HOM05D001724 ORTHO05D002973 3.9e-126 455.7 507 51.3
Ciclev10007611m.g Citrus clementina HOM05D001724 ORTHO05D002973 9.7e-125 451.1 372 62.1
TWI39G0509 Tripterygium wilfordii HOM05D001724 ORTHO05D002973 1.4e-123 447.2 345 66.4
Manes.03G141900 Manihot esculenta HOM05D001724 ORTHO05D002973 6.1e-119 431.8 369 60.2
GSVIVG01014694001 Vitis vinifera HOM05D001724 ORTHO05D002973 8.0e-119 431.4 487 49.7
arahy.Tifrunner.gnm1.ann1.IH99E4 Arachis hypogaea HOM05D001724 ORTHO05D002973 1.8e-118 430.3 368 59.0
TAR629G2285 Trochodendron aralioides HOM05D001724 ORTHO05D002973 3.0e-118 429.5 459 51.4
COL.COLO4_09841 Corchorus olitorius HOM05D001724 ORTHO05D002973 3.9e-118 429.1 496 50.4
arahy.Tifrunner.gnm1.ann1.I0JGGQ Arachis hypogaea HOM05D001724 ORTHO05D002973 5.2e-118 428.7 368 59.2
Lalb_Chr15g0082171 Lupinus albus HOM05D001724 ORTHO05D002973 1.1e-117 427.6 331 64.0
Lj1A891G67 Lonicera japonica HOM05D001724 ORTHO05D002973 1.5e-117 427.2 330 65.8
CSS0011372 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 7.4e-117 424.9 473 51.2
Glyma.08G330300 Glycine max HOM05D001724 ORTHO05D002973 4.8e-116 422.2 371 59.3
Cpa.g.sc12.117 Carica papaya HOM05D001724 ORTHO05D002973 8.2e-116 421.4 369 59.9
TPR.G24133 Trifolium pratense HOM05D001724 ORTHO05D002973 1.4e-115 420.6 368 58.4
Glyma.18G076100 Glycine max HOM05D001724 ORTHO05D002973 2.4e-115 419.9 366 60.1
Gohir.D01G062100 Gossypium hirsutum HOM05D001724 ORTHO05D002973 5.3e-115 418.7 377 59.4
Actinidia04999 Actinidia chinensis HOM05D001724 ORTHO05D002973 7.0e-115 418.3 471 49.9
Gohir.A01G091900 Gossypium hirsutum HOM05D001724 ORTHO05D002973 9.1e-115 417.9 375 60.3
Gorai.002G100700 Gossypium raimondii HOM05D001724 ORTHO05D002973 2.6e-114 416.4 377 59.2
Lj6g0025052 Lotus japonicus HOM05D001724 ORTHO05D002973 5.9e-114 415.2 366 58.5
Rhsim06G0230400 Rhododendron simsii HOM05D001724 ORTHO05D002973 7.7e-114 414.8 339 63.4
Ca_26568_v3 Cicer arietinum L. HOM05D001724 ORTHO05D002973 2.2e-113 413.3 367 59.1
Phvul.006G058000 Phaseolus vulgaris HOM05D001724 ORTHO05D002973 2.2e-113 413.3 507 47.3
PGR083G1098 Punica granatum HOM05D001724 ORTHO05D002973 2.5e-112 409.8 326 64.7
Psat5g167400 Pisum sativum HOM05D001724 ORTHO05D002973 3.2e-112 409.5 367 58.3
VMungo0540G2248 Vigna mungo HOM05D001724 ORTHO05D002973 1.6e-111 407.1 366 57.9
Eucgr.F02044 Eucalyptus grandis HOM05D001724 ORTHO05D002973 2.7e-111 406.4 375 56.8
Hund20648 Selenicereus undatus HOM05D001724 ORTHO05D002973 8.0e-111 404.8 338 60.9
CSS0031157 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 1.0e-110 404.4 335 63.0
CANSAT11G0804 Cannabis sativa HOM05D001724 ORTHO05D002973 3.3e-109 399.4 338 61.2
CSS0030567 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 7.5e-109 398.3 335 62.4
ClCG10G004430 Citrullus lanatus HOM05D001724 ORTHO05D002973 5.3e-107 392.1 348 58.3
THA.LOC104822731 Tarenaya hassleriana HOM05D001724 ORTHO05D002973 7.0e-107 391.7 317 62.1
DCAR_017078 Daucus carota HOM05D001724 ORTHO05D002973 2.7e-106 389.8 346 57.8
Cc05_g14990 Coffea canephora HOM05D001724 ORTHO05D002973 3.5e-106 389.4 361 57.1
Thecc.07G012700 Theobroma cacao HOM05D001724 ORTHO05D002973 3.5e-106 389.4 379 56.7
Nn3g20983 Nelumbo nucifera HOM05D001724 ORTHO05D002973 2.9e-105 386.3 354 55.1
vmacro11595 Vaccinium macrocarpon HOM05D001724 ORTHO05D002973 5.0e-105 385.6 425 52.0
MSTRG.13022 Avicennia marina HOM05D001724 ORTHO05D002973 3.2e-104 382.9 509 43.4
Aa31LG10G320 Aethionema arabicum HOM05D001724 ORTHO05D002973 7.2e-104 381.7 315 60.3
Sed0006389 Sechium edule HOM05D001724 ORTHO05D002973 7.2e-104 381.7 320 60.9
Sc16g0008120 Simmondsia chinensis HOM05D001724 ORTHO05D002973 2.1e-103 380.2 310 61.6
Thhalv10011283m.g Eutrema salsugineum HOM05D001724 ORTHO05D002973 2.7e-103 379.8 322 60.2
Oeu049405.1 Olea europaea HOM05D001724 ORTHO05D002973 4.7e-103 379.0 312 62.2
Sp1g41470 Schrenkiella parvula HOM05D001724 ORTHO05D002973 1.8e-102 377.1 354 55.6
AT1G55870 Arabidopsis thaliana HOM05D001724 ORTHO05D002973 2.3e-102 376.7 306 60.1
Peaxi162Scf00139g01315 Petunia axillaris HOM05D001724 ORTHO05D002973 2.3e-102 376.7 349 56.7
Sabra16G0241500 Salix brachista HOM05D001724 ORTHO05D002973 2.3e-102 376.7 506 45.8
CAN.G623.15 Capsicum annuum HOM05D001724 ORTHO05D002973 3.0e-102 376.3 349 55.6
Carub.0001s4445 Capsella rubella HOM05D001724 ORTHO05D002973 6.8e-102 375.2 320 58.8
AL1G64000 Arabidopsis lyrata HOM05D001724 ORTHO05D002973 8.8e-102 374.8 320 58.4
AUR62017111 Chenopodium quinoa HOM05D001724 ORTHO05D002973 1.5e-101 374.0 327 58.4
Nitab4.5_0007415g0040 Nicotiana tabacum HOM05D001724 ORTHO05D002973 1.5e-101 374.0 326 58.6
Nitab4.5_0002736g0010 Nicotiana tabacum HOM05D001724 ORTHO05D002973 5.7e-101 372.1 349 54.7
Solyc07g065620.4 Solanum lycopersicum HOM05D001724 ORTHO05D002973 1.7e-100 370.5 330 56.1
PGSC0003DMG400022169 Solanum tuberosum HOM05D001724 ORTHO05D002973 2.8e-100 369.8 368 53.3
CARHR045570 Cardamine hirsuta HOM05D001724 ORTHO05D002973 3.7e-100 369.4 320 58.4
AUR62036464 Chenopodium quinoa HOM05D001724 ORTHO05D002973 3.7e-100 369.4 344 57.3
BraSC56t46398Z Brassica rapa HOM05D001724 ORTHO05D002973 8.3e-100 368.2 325 58.8
EL10Ac4g07558 Beta vulgaris HOM05D001724 ORTHO05D002973 1.8e-99 367.1 374 53.5
C06p10790 Brassica napus HOM05D001724 ORTHO05D002973 2.4e-99 366.7 335 57.0
Sopen07g033830 Solanum pennellii HOM05D001724 ORTHO05D002973 7.0e-99 365.2 334 55.4
BcaC08g43659 Brassica carinata HOM05D001724 ORTHO05D002973 9.1e-99 364.8 335 56.7
BolC6t36163H Brassica oleracea HOM05D001724 ORTHO05D002973 9.1e-99 364.8 335 56.7
BcaNung06014 Brassica carinata HOM05D001724 ORTHO05D002973 2.7e-98 363.2 302 59.3
BcaB02g10794 Brassica carinata HOM05D001724 ORTHO05D002973 7.7e-98 361.7 328 57.3
HanXRQChr11g0334101 Helianthus annuus HOM05D001724 ORTHO05D002973 2.9e-97 359.8 311 59.2
PSO210G1056 Papaver somniferum HOM05D001724 ORTHO05D002973 5.0e-97 359.0 298 60.7
MELO3C014116.2 Cucumis melo HOM05D001724 ORTHO05D002973 9.5e-96 354.8 326 57.4
Migut.H01753 Erythranthe guttata HOM05D001724 ORTHO05D002973 4.7e-95 352.4 313 59.7
Aqoxy1G04266 Aquilegia oxysepala HOM05D001724 ORTHO05D002973 1.0e-94 351.3 480 43.8
CsaV3_3G004220 Cucumis sativus L. HOM05D001724 ORTHO05D002973 1.5e-93 347.4 335 55.8
Ah.06g181460 Amaranthus hybridus HOM05D001724 ORTHO05D002973 8.3e-92 341.7 344 54.4
Potri.001G368401 Populus trichocarpa HOM05D001724 ORTHO05D002973 1.6e-90 337.4 413 48.9
HPP92_018203 Vanilla planifolia HOM05D001724 ORTHO05D002973 2.0e-90 337.0 356 51.4
Lsat_1_v5_gn_7_114340 Lactuca sativa HOM05D001724 ORTHO05D002973 1.0e-89 334.7 335 56.1
SGA_v2.0_scaffold8G04414 Striga asiatica HOM05D001724 ORTHO05D002973 1.0e-89 334.7 314 55.4
ECA236G0853 Erigeron canadensis HOM05D001724 ORTHO05D002973 2.3e-89 333.6 323 54.8
SHI26518 Sapria himalayana HOM05D000105 ORTHO05D000023 4.3e-88 329.3 311 52.4
ATR0751G261 Amborella trichopoda HOM05D001724 ORTHO05D002973 1.3e-84 317.8 329 52.0
Medtr3g460830 Medicago truncatula HOM05D001724 ORTHO05D002973 1.7e-81 307.4 238 65.1
CDE10G0672 Ceratophyllum demersum HOM05D001724 ORTHO05D002973 1.9e-75 287.3 335 47.8
Zm00001eb424550 Zea mays HOM05D001724 ORTHO05D002973 1.2e-63 248.1 349 41.5
MBI15_g39785_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000157 4.3e-56 223.0 233 51.9
CDE10G0173 Ceratophyllum demersum HOM05D001724 ORTHO05D002973 8.1e-55 218.8 214 52.3
unitig_744.g24042 Utricularia gibba HOM05D001724 ORTHO05D002973 3.5e-50 203.4 315 39.7
Pp3c6_1870 Physcomitrium patens HOM05D001724 ORTHO05D002973 1.6e-31 141.4 325 32.3
FvH4_3g43120 Fragaria vesca HOM05D001724 ORTHO05D002973 1.2e-29 135.2 92 71.7
PGSC0003DMG400041007 Solanum tuberosum HOM05D001724 ORTHO05D002973 4.5e-29 133.3 137 51.8
SMO266G0093 Selaginella moellendorffii HOM05D001724 ORTHO05D002973 6.1e-26 122.9 315 27.6
Mapoly0076s0056 Marchantia polymorpha HOM05D001724 ORTHO05D002973 3.0e-25 120.6 356 28.7
CBR_g84872 Chara braunii HOM05D001724 ORTHO05D002973 2.2e-23 114.4 396 25.5
SMO117G0265 Selaginella moellendorffii HOM05D001724 ORTHO05D002973 1.1e-22 112.1 323 27.9
BcaC08g44223 Brassica carinata HOM05D001724 ORTHO05D002973 1.8e-22 111.3 120 52.5
DCAR_018616 Daucus carota HOM05D001724 ORTHO05D002973 9.4e-11 72.4 342 26.0
BolC6t36827H Brassica oleracea HOM05D001724 ORTHO05D002973 2.1e-10 71.2 64 53.1
Carub.0003s2575 Capsella rubella HOM05D001724 ORTHO05D002973 4.7e-10 70.1 338 26.0
AT3G25430 Arabidopsis thaliana HOM05D001724 ORTHO05D002973 3.0e-09 67.4 339 24.2
MSTRG.12750 Avicennia marina HOM05D001724 ORTHO05D002973 5.1e-09 66.6 319 23.8
Sed0003315 Sechium edule HOM05D001724 ORTHO05D002973 5.1e-09 66.6 300 24.7
CANSAT01G3027 Cannabis sativa HOM05D001724 ORTHO05D002973 4.4e-08 63.5 282 23.0
Ciclev10014999m.g Citrus clementina HOM05D001724 ORTHO05D002973 4.4e-08 63.5 293 23.9
CsaV3_7G027140 Cucumis sativus L. HOM05D001724 ORTHO05D002973 1.3e-07 62.0 283 25.4
ClCG09G007930 Citrullus lanatus HOM05D001724 ORTHO05D002973 4.8e-07 60.1 294 24.5
BcaB06g26745 Brassica carinata HOM05D001724 ORTHO05D002973 6.3e-07 59.7 315 23.8
Sp3g22970 Schrenkiella parvula HOM05D001724 ORTHO05D002973 1.8e-06 58.2 340 22.9
BcaC06g35812 Brassica carinata HOM05D001724 ORTHO05D002973 7.0e-06 56.2 334 24.6
C07p10590 Brassica napus HOM05D001724 ORTHO05D002973 7.0e-06 56.2 334 24.6
BolC7t41524H Brassica oleracea HOM05D001724 ORTHO05D002973 7.0e-06 56.2 334 24.6
CiPaw.13G058600 Carya illinoinensis HOM05D001724 ORTHO05D002973 7.0e-06 56.2 310 25.5
A07p06960 Brassica napus HOM05D001724 ORTHO05D002973 9.1e-06 55.8 341 24.3
BraA07t28486Z Brassica rapa HOM05D001724 ORTHO05D002973 9.1e-06 55.8 341 24.3


User provided reference genes

Program Settings