Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1089500 Malus domestica HOM05D005330 ORTHO05D006489 4.1e-226 787.7 397 100.0
Prupe.3G040200 Prunus persica HOM05D005330 ORTHO05D006489 8.8e-112 407.9 402 58.2
Phvul.010G129300 Phaseolus vulgaris HOM05D005330 ORTHO05D006489 1.5e-103 380.6 402 52.0
MD09G1182600 Malus domestica HOM05D005330 ORTHO05D006489 3.7e-102 375.9 397 53.7
Eucgr.F04419 Eucalyptus grandis HOM05D005330 ORTHO05D006489 4.9e-102 375.6 407 51.1
Glyma.16G008300 Glycine max HOM05D005330 ORTHO05D006489 6.3e-102 375.2 398 51.3
Thecc.06G120800 Theobroma cacao HOM05D005330 ORTHO05D006489 6.3e-102 375.2 398 51.8
Manes.11G019800 Manihot esculenta HOM05D005330 ORTHO05D006489 3.2e-101 372.9 406 52.0
VMungo0331G1542 Vigna mungo HOM05D005330 ORTHO05D006489 3.2e-101 372.9 402 50.2
GSVIVG01016752001 Vitis vinifera HOM05D005330 ORTHO05D006489 4.5e-100 369.0 404 50.7
Cpa.g.sc25.125 Carica papaya HOM05D005330 ORTHO05D006489 5.9e-100 368.6 402 50.0
CiPaw.01G218300 Carya illinoinensis HOM05D005330 ORTHO05D006489 2.3e-99 366.7 404 51.2
MD09G1182800 Malus domestica HOM05D005330 ORTHO05D006489 6.6e-99 365.2 394 52.5
Lalb_Chr04g0263541 Lupinus albus HOM05D005330 ORTHO05D006489 1.9e-98 363.6 402 50.7
Atru.chr1.3994 Acer truncatum HOM05D005330 ORTHO05D006489 3.6e-97 359.4 404 49.8
Gohir.D10G055300 Gossypium hirsutum HOM05D005330 ORTHO05D006489 3.6e-97 359.4 398 50.0
Gorai.011G059000 Gossypium raimondii HOM05D005330 ORTHO05D006489 3.6e-97 359.4 398 50.0
PGR119G1300 Punica granatum HOM05D005330 ORTHO05D006489 4.7e-97 359.0 411 50.6
Gohir.A10G053500 Gossypium hirsutum HOM05D005330 ORTHO05D006489 6.1e-97 358.6 398 49.5
vmacro15037 Vaccinium macrocarpon HOM05D005330 ORTHO05D006489 1.4e-96 357.5 399 49.1
Cfa003530 Carpinus fangiana HOM05D005330 ORTHO05D006489 3.1e-96 356.3 404 49.5
Lj3g0015373 Lotus japonicus HOM05D005330 ORTHO05D006489 4.0e-96 355.9 398 49.0
Dinv20432 Davidia involucrata HOM05D005330 ORTHO05D006489 2.0e-95 353.6 399 47.9
Sabra03G0038500 Salix brachista HOM05D005330 ORTHO05D006489 1.7e-94 350.5 395 49.4
DCAR_022693 Daucus carota HOM05D005330 ORTHO05D006489 4.9e-94 349.0 396 47.0
Potri.003G065500 Populus trichocarpa HOM05D005330 ORTHO05D006489 8.3e-94 348.2 394 49.0
Glyma.18G149800 Glycine max HOM05D005330 ORTHO05D006489 1.9e-93 347.1 402 48.8
TWI79G1442 Tripterygium wilfordii HOM05D005330 ORTHO05D006489 1.9e-93 347.1 390 47.7
QL05p004250 Quercus lobata HOM05D005330 ORTHO05D006489 2.4e-93 346.7 427 47.5
Psat0s741g0240 Pisum sativum HOM05D005330 ORTHO05D006489 3.2e-93 346.3 402 47.8
Nitab4.5_0001199g0030 Nicotiana tabacum HOM05D005330 ORTHO05D006489 5.4e-93 345.5 393 47.1
TWI31G1192 Tripterygium wilfordii HOM05D005330 ORTHO05D006489 5.4e-93 345.5 390 47.9
Nitab4.5_0000189g0150 Nicotiana tabacum HOM05D005330 ORTHO05D006489 7.0e-93 345.1 393 47.1
EL10Ac7g16412 Beta vulgaris HOM05D005330 ORTHO05D006489 1.2e-92 344.4 408 46.8
Hund18689 Selenicereus undatus HOM05D005330 ORTHO05D006489 1.6e-92 344.0 392 47.2
Lsat_1_v5_gn_5_136241 Lactuca sativa HOM05D005330 ORTHO05D006489 4.6e-92 342.4 405 46.9
Medtr8g020850 Medicago truncatula HOM05D005330 ORTHO05D006489 6.6e-91 338.6 398 46.5
Ciclev10025803m.g Citrus clementina HOM05D005330 ORTHO05D006489 8.6e-91 338.2 391 50.4
Solyc12g049330.2 Solanum lycopersicum HOM05D005330 ORTHO05D006489 1.9e-90 337.0 397 46.1
Sopen12g023810 Solanum pennellii HOM05D005330 ORTHO05D006489 1.9e-90 337.0 397 45.3
PGSC0003DMG400014100 Solanum tuberosum HOM05D005330 ORTHO05D006489 2.5e-90 336.7 388 46.4
Cc04_g01320 Coffea canephora HOM05D005330 ORTHO05D006489 7.3e-90 335.1 402 46.5
Sed0026793 Sechium edule HOM05D005330 ORTHO05D006489 1.6e-89 334.0 419 47.7
Sed0005660 Sechium edule HOM05D005330 ORTHO05D006489 2.1e-89 333.6 416 46.6
Hund05737 Selenicereus undatus HOM05D005330 ORTHO05D006489 8.0e-89 331.6 404 44.8
MD09G1182700 Malus domestica HOM05D005330 ORTHO05D006489 3.1e-88 329.7 400 48.2
Haze_16035 Corylus avellana HOM05D005330 ORTHO05D006489 5.2e-88 328.9 461 43.4
Sc10g0007910 Simmondsia chinensis HOM05D005330 ORTHO05D006489 6.8e-88 328.6 400 45.5
Ah.08g216810 Amaranthus hybridus HOM05D005330 ORTHO05D006489 1.5e-87 327.4 414 44.7
Ca_23387_v3 Cicer arietinum L. HOM05D005330 ORTHO05D006489 1.5e-87 327.4 402 45.3
Actinidia32189 Actinidia chinensis HOM05D005330 ORTHO05D006489 2.0e-87 327.0 398 45.5
Oeu015485.2 Olea europaea HOM05D005330 ORTHO05D006489 4.9e-86 322.4 399 43.9
Potri.001G168700 Populus trichocarpa HOM05D005330 ORTHO05D006489 4.9e-86 322.4 398 46.2
Atru.chr1.3993 Acer truncatum HOM05D005330 ORTHO05D006489 1.1e-85 321.2 404 46.0
ClCG09G000970 Citrullus lanatus HOM05D005330 ORTHO05D006489 4.1e-85 319.3 421 44.2
Nn6g34611 Nelumbo nucifera HOM05D005330 ORTHO05D006489 7.1e-85 318.5 408 44.6
HanXRQChr12g0360301 Helianthus annuus HOM05D005330 ORTHO05D006489 1.2e-84 317.8 400 45.5
HanXRQChr12g0360351 Helianthus annuus HOM05D005330 ORTHO05D006489 1.2e-84 317.8 400 45.5
Rhsim08G0239400 Rhododendron simsii HOM05D005330 ORTHO05D006489 1.6e-84 317.4 396 46.2
Hma1.2p1_0686F.1_g203410 Hydrangea macrophylla HOM05D005330 ORTHO05D006489 4.6e-84 315.8 402 45.8
SalBow6G0719 Salvia bowleyana HOM05D005330 ORTHO05D006489 1.7e-83 313.9 403 41.7
SalBow6G0331 Salvia bowleyana HOM05D005330 ORTHO05D006489 2.3e-83 313.5 403 41.7
AUR62009886 Chenopodium quinoa HOM05D005330 ORTHO05D006489 1.9e-82 310.5 396 44.9
Hma1.2p1_0291F.1_g115070 Hydrangea macrophylla HOM05D005330 ORTHO05D006489 1.2e-81 307.8 387 46.5
ECA234G4612 Erigeron canadensis HOM05D005330 ORTHO05D006489 2.3e-80 303.5 395 43.5
THA.LOC104810366 Tarenaya hassleriana HOM05D005330 ORTHO05D006489 5.2e-80 302.4 403 43.7
HPP92_013292 Vanilla planifolia HOM05D005330 ORTHO05D006489 7.6e-79 298.5 400 42.8
DCAR_016124 Daucus carota HOM05D005330 ORTHO05D006489 9.9e-79 298.1 388 43.8
SGA_v2.0_scaffold122G33335 Striga asiatica HOM05D005330 ORTHO05D006489 3.7e-78 296.2 398 41.7
CARHR044500 Cardamine hirsuta HOM05D005330 ORTHO05D006489 4.9e-78 295.8 405 40.7
RcHm_v2.0_Chr2g0145651 Rosa chinensis HOM05D005330 ORTHO05D006489 4.9e-78 295.8 406 42.9
Duzib160G0528 Durio zibethinus HOM05D005330 ORTHO05D006489 6.4e-78 295.4 398 43.0
BcaB04g17020 Brassica carinata HOM05D005330 ORTHO05D006489 4.1e-77 292.7 397 40.3
BraA08t32169Z Brassica rapa HOM05D005330 ORTHO05D006489 2.7e-76 290.0 399 41.9
BcaC08g43595 Brassica carinata HOM05D005330 ORTHO05D006489 7.8e-76 288.5 404 41.8
C06p09930 Brassica napus HOM05D005330 ORTHO05D006489 7.8e-76 288.5 404 41.8
BolC6t36066H Brassica oleracea HOM05D005330 ORTHO05D006489 7.8e-76 288.5 404 41.8
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 7.8e-76 288.5 324 47.5
BraA06t23266Z Brassica rapa HOM05D005330 ORTHO05D006489 1.7e-75 287.3 402 40.5
A06p00510 Brassica napus HOM05D005330 ORTHO05D006489 2.3e-75 287.0 402 40.5
ATR0598G333 Amborella trichopoda HOM05D005330 ORTHO05D006489 3.0e-75 286.6 402 42.3
AT1G54150 Arabidopsis thaliana HOM05D005330 ORTHO05D006489 3.9e-75 286.2 405 40.5
A08p01180 Brassica napus HOM05D005330 ORTHO05D006489 3.9e-75 286.2 399 41.6
C03p92030 Brassica napus HOM05D005330 ORTHO05D006489 8.6e-75 285.0 399 41.6
BolC3t21521H Brassica oleracea HOM05D005330 ORTHO05D006489 1.1e-74 284.6 399 41.4
AUR62001479 Chenopodium quinoa HOM05D005330 ORTHO05D006489 1.5e-74 284.3 404 42.6
SGA_v2.0_scaffold71G23853 Striga asiatica HOM05D005330 ORTHO05D006489 1.5e-74 284.3 439 40.3
Glyma.03G080300 Glycine max HOM05D005330 ORTHO05D006489 1.9e-74 283.9 402 42.5
BcaC01g01438 Brassica carinata HOM05D005330 ORTHO05D006489 7.3e-74 282.0 399 41.1
Carub.0001s4339 Capsella rubella HOM05D005330 ORTHO05D006489 7.3e-74 282.0 405 40.2
Migut.I01076 Erythranthe guttata HOM05D005330 ORTHO05D006489 9.6e-74 281.6 408 41.9
AL1G62870 Arabidopsis lyrata HOM05D005330 ORTHO05D006489 1.6e-73 280.8 400 40.5
Peaxi162Scf00177g00417 Petunia axillaris HOM05D005330 ORTHO05D006489 2.8e-73 280.0 363 44.6
BcaB07g33256 Brassica carinata HOM05D005330 ORTHO05D006489 8.1e-73 278.5 409 40.6
FAN05G5341 Fragaria x ananassa HOM05D005330 ORTHO05D006489 5.2e-72 275.8 409 42.1
Sp1g40600 Schrenkiella parvula HOM05D005330 ORTHO05D006489 6.8e-72 275.4 406 39.4
Aa31LG10G1260 Aethionema arabicum HOM05D005330 ORTHO05D006489 1.5e-71 274.2 406 39.9
arahy.Tifrunner.gnm1.ann1.K577WU Arachis hypogaea HOM05D005330 ORTHO05D006489 2.6e-71 273.5 301 51.2
FvH4_6g34790 Fragaria vesca HOM05D005330 ORTHO05D006489 2.6e-71 273.5 409 42.1
arahy.Tifrunner.gnm1.ann1.RX87J0 Arachis hypogaea HOM05D005330 ORTHO05D006489 3.4e-71 273.1 301 50.8
Lj5A36G79 Lonicera japonica HOM05D005330 ORTHO05D006489 3.4e-71 273.1 414 42.0
COL.COLO4_30752 Corchorus olitorius HOM05D005330 ORTHO05D006489 2.2e-70 270.4 397 42.1
CAN.G1455.4 Capsicum annuum HOM05D005330 ORTHO05D006489 1.4e-69 267.7 278 48.2
Aqoxy2G00145 Aquilegia oxysepala HOM05D005330 ORTHO05D006489 3.2e-69 266.5 415 38.1
Thhalv10011564m.g Eutrema salsugineum HOM05D005330 ORTHO05D006489 5.4e-69 265.8 406 38.4
SEGI_21309 Sequoiadendron giganteum HOM05D005330 ORTHO05D006489 7.1e-69 265.4 408 40.4
PSO135G0621 Papaver somniferum HOM05D005330 ORTHO05D006489 1.6e-68 264.2 410 39.8
PSO724G1321 Papaver somniferum HOM05D005330 ORTHO05D006489 6.0e-68 262.3 419 38.9
MELO3C024354.2 Cucumis melo HOM05D005330 ORTHO05D006489 2.3e-67 260.4 303 49.8
CsaV3_7G034470 Cucumis sativus L. HOM05D005330 ORTHO05D006489 1.1e-66 258.1 304 48.7
HanXRQChr12g0360331 Helianthus annuus HOM05D005330 ORTHO05D006489 7.3e-66 255.4 400 41.0
CDE05G1829 Ceratophyllum demersum HOM05D005330 ORTHO05D006489 2.1e-65 253.8 325 44.0
Os03g0177300 Oryza sativa ssp. japonica HOM05D005330 ORTHO05D006489 2.8e-57 226.9 390 34.4
Mapoly0002s0144 Marchantia polymorpha HOM05D005330 ORTHO05D006489 1.4e-56 224.6 438 34.0
SMO118G0169 Selaginella moellendorffii HOM05D005330 ORTHO05D006489 1.4e-56 224.6 404 34.4
TAR624G1001 Trochodendron aralioides HOM05D005330 ORTHO05D006489 4.0e-56 223.0 248 49.6
TAR624G0147 Trochodendron aralioides HOM05D005330 ORTHO05D006489 1.6e-52 211.1 249 49.0
CAN.G1080.1 Capsicum annuum HOM05D005330 ORTHO05D006489 2.3e-51 207.2 278 41.0
PSO135G0922 Papaver somniferum HOM05D005330 ORTHO05D006489 3.3e-50 203.4 389 36.0
AagrBONN_evm.TU.Sc2ySwM_228.1646 Anthoceros agrestis HOM05D005330 ORTHO05D006489 6.9e-48 195.7 415 34.2
Pp3c13_6970 Physcomitrium patens HOM05D005330 ORTHO05D006489 2.1e-44 184.1 503 28.6
PSO135G0120 Papaver somniferum HOM05D005330 ORTHO05D006489 1.4e-40 171.4 368 33.7
Zm00001eb401910 Zea mays HOM05D005330 ORTHO05D006489 2.2e-38 164.1 247 38.5
Pp3c16_12380 Physcomitrium patens HOM05D005330 ORTHO05D006489 9.3e-37 158.7 416 28.1
PSO724G1224 Papaver somniferum HOM05D005330 ORTHO05D006489 3.7e-33 146.7 197 39.6
Aqoxy3G00178 Aquilegia oxysepala HOM05D005330 ORTHO05D006489 1.8e-32 144.4 218 38.1
CBR_g17139 Chara braunii HOM05D005330 ORTHO05D006489 5.3e-32 142.9 347 30.5
Actinidia21790 Actinidia chinensis HOM05D005330 ORTHO05D006489 1.1e-29 135.2 142 48.6
CSS0027574 Camellia sinensis var. sinensis HOM05D005330 ORTHO05D006489 9.7e-26 122.1 151 42.4
Dinv20433 Davidia involucrata HOM05D005330 ORTHO05D006489 1.4e-24 118.2 256 36.7
Lsat_1_v5_gn_5_136301 Lactuca sativa HOM05D005330 ORTHO05D006489 5.9e-23 112.8 168 40.5
CSS0046024 Camellia sinensis var. sinensis HOM05D005330 ORTHO05D006489 7.7e-23 112.5 107 53.3
Aqoxy3G00203 Aquilegia oxysepala HOM05D005330 ORTHO05D006489 2.1e-20 104.4 300 31.7
Actinidia21791 Actinidia chinensis HOM05D005330 ORTHO05D006489 2.7e-20 104.0 219 33.3
CSS0036813 Camellia sinensis var. sinensis HOM05D005330 ORTHO05D006489 1.6e-12 78.2 125 39.2
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 6.7e-11 72.8 270 25.2
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 1.3e-09 68.6 182 25.8
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.7e-09 68.2 182 26.4
FAN27G2094 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.7e-09 68.2 182 26.4
DCAR_031911 Daucus carota HOM05D005330 ORTHO05D006489 2.2e-09 67.8 84 44.0
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.8e-09 67.4 182 25.8
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 8.2e-09 65.9 183 25.1
BcaC02g10340 Brassica carinata HOM05D003358 ORTHO05D003864 1.4e-08 65.1 282 22.3
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 1.4e-08 65.1 183 26.2
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.4e-08 65.1 183 26.2
Eucgr.I00478 Eucalyptus grandis HOM05D005330 ORTHO05D006489 1.8e-08 64.7 128 36.7
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 4.1e-08 63.5 178 25.8
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 5.3e-08 63.2 177 26.6
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 7.0e-08 62.8 180 25.6
C04p30150 Brassica napus HOM05D003358 ORTHO05D003864 9.1e-08 62.4 285 22.5
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 9.1e-08 62.4 183 23.5
Carub.0005s1267 Capsella rubella HOM05D003358 ORTHO05D003864 1.2e-07 62.0 198 24.7
Oeu020347.1 Olea europaea HOM05D005330 ORTHO05D006489 1.2e-07 62.0 61 45.9
Aqoxy3G02542 Aquilegia oxysepala HOM05D055259 ORTHO05D006489 2.0e-07 61.2 174 31.0
BolC4t24547H Brassica oleracea HOM05D003358 ORTHO05D003864 2.6e-07 60.8 267 22.8
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.6e-07 60.8 184 23.9
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 2.6e-07 60.8 180 25.0
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 3.5e-07 60.5 187 26.2
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 4.5e-07 60.1 181 26.0
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 4.5e-07 60.1 183 24.0
TPR.G32824 Trifolium pratense HOM05D003358 ORTHO05D003864 4.5e-07 60.1 199 24.6
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 4.5e-07 60.1 185 26.5
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 5.9e-07 59.7 184 27.2
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 7.7e-07 59.3 186 28.0
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 1.3e-06 58.5 187 23.5
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 1.3e-06 58.5 182 25.3
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 1.7e-06 58.2 185 22.7
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.7e-06 58.2 180 23.9
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 1.7e-06 58.2 182 24.7
Carub.0002s0588 Capsella rubella HOM05D003358 ORTHO05D003864 2.9e-06 57.4 267 24.0
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 3.8e-06 57.0 181 23.2
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 3.8e-06 57.0 185 23.8
Oeu020346.1 Olea europaea HOM05D005330 ORTHO05D006489 3.8e-06 57.0 124 33.9
Pp3c8_18050 Physcomitrium patens HOM05D001948 ORTHO05D001873 3.8e-06 57.0 60 38.3
BraA04t15751Z Brassica rapa HOM05D003358 ORTHO05D003864 5.0e-06 56.6 89 34.8
RhsimUnG0257000 Rhododendron simsii HOM05D002922 ORTHO05D000401 8.5e-06 55.8 40 57.5


User provided reference genes

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