Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1206100 Malus domestica HOM05D000104 ORTHO05D004024 7.1e-110 400.6 201 100.0
TAR375G0536 Trochodendron aralioides HOM05D000104 ORTHO05D004024 2.2e-26 123.2 199 35.7
TAR374G1169 Trochodendron aralioides HOM05D000104 ORTHO05D004024 3.8e-26 122.5 199 35.7
Gohir.D07G147500 Gossypium hirsutum HOM05D000104 ORTHO05D004024 2.3e-23 113.2 141 40.4
Gorai.001G168700 Gossypium raimondii HOM05D000104 ORTHO05D004024 2.3e-23 113.2 141 40.4
Duzib268G0692 Durio zibethinus HOM05D000104 ORTHO05D004024 5.1e-23 112.1 164 37.8
Aqoxy7G00269 Aquilegia oxysepala HOM05D000104 ORTHO05D004024 6.6e-23 111.7 153 37.9
COL.COLO4_12730 Corchorus olitorius HOM05D000104 ORTHO05D004024 3.3e-22 109.4 141 38.3
Gohir.A07G141800 Gossypium hirsutum HOM05D000104 ORTHO05D004024 7.3e-22 108.2 142 38.7
Thecc.01G357200 Theobroma cacao HOM05D000104 ORTHO05D004024 9.6e-22 107.8 195 33.3
Dinv32495 Davidia involucrata HOM05D000104 ORTHO05D004024 2.8e-21 106.3 195 32.8
Potri.014G086500 Populus trichocarpa HOM05D000104 ORTHO05D004024 2.8e-21 106.3 148 37.2
unitig_8.g3794 Utricularia gibba HOM05D000104 ORTHO05D004024 2.8e-21 106.3 132 40.2
Eucgr.D02305 Eucalyptus grandis HOM05D000104 ORTHO05D004024 3.6e-21 105.9 172 36.6
Gohir.D12G111700 Gossypium hirsutum HOM05D000104 ORTHO05D004024 3.6e-21 105.9 143 37.1
Hund16655 Selenicereus undatus HOM05D000104 ORTHO05D004024 3.6e-21 105.9 141 39.0
Gohir.A12G108600 Gossypium hirsutum HOM05D000104 ORTHO05D004024 4.7e-21 105.5 143 37.8
Gorai.008G121100 Gossypium raimondii HOM05D000104 ORTHO05D004024 4.7e-21 105.5 143 37.1
Gohir.D11G094400 Gossypium hirsutum HOM05D000104 ORTHO05D004024 6.2e-21 105.1 163 36.2
Gorai.007G100800 Gossypium raimondii HOM05D000104 ORTHO05D004024 6.2e-21 105.1 163 36.2
Lj3g0005670 Lotus japonicus HOM05D000104 ORTHO05D004024 8.1e-21 104.8 161 35.4
Sed0000619 Sechium edule HOM05D000104 ORTHO05D004024 8.1e-21 104.8 195 32.8
Medtr8g030550 Medicago truncatula HOM05D000104 ORTHO05D004024 1.1e-20 104.4 141 36.9
Sabra14G0062700 Salix brachista HOM05D000104 ORTHO05D004024 1.1e-20 104.4 148 36.5
Atru.chr5.516 Acer truncatum HOM05D000104 ORTHO05D004024 1.4e-20 104.0 158 34.2
Gohir.A11G090000 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.4e-20 104.0 141 36.9
MBI17_g33790_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 1.4e-20 104.0 160 38.1
MELO3C006101.2 Cucumis melo HOM05D000104 ORTHO05D004024 1.8e-20 103.6 194 32.5
Sc01g0003500 Simmondsia chinensis HOM05D000104 ORTHO05D004024 1.8e-20 103.6 143 34.3
Lj7C510T14 Lonicera japonica HOM05D000104 ORTHO05D004024 2.4e-20 103.2 173 31.8
ClCG05G001450 Citrullus lanatus HOM05D000104 ORTHO05D004024 3.1e-20 102.8 161 35.4
CsaV3_3G008840 Cucumis sativus L. HOM05D000104 ORTHO05D004024 3.1e-20 102.8 195 32.3
Lalb_Chr17g0339481 Lupinus albus HOM05D000104 ORTHO05D004024 3.1e-20 102.8 192 32.3
Sed0026227 Sechium edule HOM05D000104 ORTHO05D004024 3.1e-20 102.8 166 33.7
GSVIVG01026952001 Vitis vinifera HOM05D000104 ORTHO05D004024 4.0e-20 102.4 196 32.7
MSTRG.17279 Avicennia marina HOM05D000104 ORTHO05D004024 5.3e-20 102.1 133 35.3
CSS0043783 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004024 5.3e-20 102.1 164 32.9
MBI18_g02828_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 5.3e-20 102.1 197 33.0
AUR62022585 Chenopodium quinoa HOM05D000104 ORTHO05D004024 6.9e-20 101.7 137 38.0
SGA_v2.0_scaffold4G02298 Striga asiatica HOM05D000104 ORTHO05D004024 6.9e-20 101.7 147 36.1
unitig_22.g5347 Utricularia gibba HOM05D000104 ORTHO05D004024 6.9e-20 101.7 132 37.1
EL10Ac1g00397 Beta vulgaris HOM05D000104 ORTHO05D004024 9.0e-20 101.3 137 38.0
Ciclev10018438m.g Citrus clementina HOM05D000104 ORTHO05D004024 9.0e-20 101.3 159 34.0
Migut.B01772 Erythranthe guttata HOM05D000104 ORTHO05D004024 9.0e-20 101.3 130 36.9
Sabra02G0127900 Salix brachista HOM05D000104 ORTHO05D004024 9.0e-20 101.3 161 34.2
AT2G46020 Arabidopsis thaliana HOM05D000104 ORTHO05D004024 1.2e-19 100.9 195 32.8
Cfa003903 Carpinus fangiana HOM05D000104 ORTHO05D004024 1.2e-19 100.9 136 36.0
Haze_15527 Corylus avellana HOM05D000104 ORTHO05D004024 1.2e-19 100.9 194 32.0
Ca_23613_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 1.5e-19 100.5 143 35.7
Manes.05G032800 Manihot esculenta HOM05D000104 ORTHO05D004024 1.5e-19 100.5 194 32.5
Psat4g212400 Pisum sativum HOM05D000104 ORTHO05D004024 1.5e-19 100.5 164 34.1
TPR.G16549 Trifolium pratense HOM05D000104 ORTHO05D004024 1.5e-19 100.5 167 34.1
TWI14G1411 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 1.5e-19 100.5 128 35.9
MSTRG.20843 Avicennia marina HOM05D000104 ORTHO05D004024 2.0e-19 100.1 130 36.9
Nn6g33365 Nelumbo nucifera HOM05D000104 ORTHO05D004024 2.0e-19 100.1 155 32.3
Glyma.09G257900 Glycine max HOM05D000104 ORTHO05D004024 2.6e-19 99.8 136 38.2
TWI23G0799 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 2.6e-19 99.8 133 35.3
AUR62004379 Chenopodium quinoa HOM05D000104 ORTHO05D004024 3.4e-19 99.4 137 38.0
Os02g0114000 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004024 3.4e-19 99.4 162 35.2
QL04p053980 Quercus lobata HOM05D000104 ORTHO05D004024 5.8e-19 98.6 194 32.0
BraA04t18883Z Brassica rapa HOM05D000104 ORTHO05D004024 7.6e-19 98.2 195 31.3
Glyma.16G035100 Glycine max HOM05D000104 ORTHO05D004024 7.6e-19 98.2 141 34.8
Glyma.18G234700 Glycine max HOM05D000104 ORTHO05D004024 7.6e-19 98.2 136 37.5
MD07G1134800 Malus domestica HOM05D000104 ORTHO05D004024 9.9e-19 97.8 195 32.8
Sopen01g038570 Solanum pennellii HOM05D000104 ORTHO05D004024 9.9e-19 97.8 143 35.7
AL4G45240 Arabidopsis lyrata HOM05D000104 ORTHO05D004024 1.3e-18 97.4 195 31.3
vmacro13264 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 1.3e-18 97.4 141 35.5
vmacro20931 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 1.3e-18 97.4 165 32.7
VMungo1383G0951 Vigna mungo HOM05D000104 ORTHO05D004024 1.3e-18 97.4 188 33.0
CARHR141280 Cardamine hirsuta HOM05D000104 ORTHO05D004024 1.7e-18 97.1 195 30.8
Manes.01G255300 Manihot esculenta HOM05D000104 ORTHO05D004024 1.7e-18 97.1 164 33.5
Solyc01g094800.4 Solanum lycopersicum HOM05D000104 ORTHO05D004024 1.7e-18 97.1 143 35.7
Actinidia20892 Actinidia chinensis HOM05D000104 ORTHO05D004024 2.2e-18 96.7 141 32.6
arahy.Tifrunner.gnm1.ann1.8BN0DB Arachis hypogaea HOM05D000104 ORTHO05D004024 2.2e-18 96.7 161 31.7
arahy.Tifrunner.gnm1.ann1.AXD4AC Arachis hypogaea HOM05D000104 ORTHO05D004024 2.2e-18 96.7 161 31.7
BcaB01g03241 Brassica carinata HOM05D000104 ORTHO05D004024 2.2e-18 96.7 195 31.3
A04p34220 Brassica napus HOM05D000104 ORTHO05D004024 2.2e-18 96.7 195 31.3
Peaxi162Scf00020g00814 Petunia axillaris HOM05D000104 ORTHO05D004024 2.2e-18 96.7 138 37.0
Potri.002G160900 Populus trichocarpa HOM05D000104 ORTHO05D004024 2.2e-18 96.7 195 32.8
Rhsim07G0013500 Rhododendron simsii HOM05D000104 ORTHO05D004024 2.2e-18 96.7 141 35.5
Zm00001eb229760 Zea mays HOM05D000104 ORTHO05D004024 2.2e-18 96.7 166 32.5
Phvul.008G061000 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 2.9e-18 96.3 139 35.3
CiPaw.02G032300 Carya illinoinensis HOM05D000104 ORTHO05D004024 3.8e-18 95.9 161 33.5
Cc02_g38210 Coffea canephora HOM05D000104 ORTHO05D004024 3.8e-18 95.9 137 32.8
BolC4t28700H Brassica oleracea HOM05D000104 ORTHO05D004024 4.9e-18 95.5 195 31.8
Sp4g28080 Schrenkiella parvula HOM05D000104 ORTHO05D004024 4.9e-18 95.5 195 30.3
Glyma.07G069400 Glycine max HOM05D000104 ORTHO05D004024 6.4e-18 95.1 141 34.8
Lalb_Chr10g0096851 Lupinus albus HOM05D000104 ORTHO05D004024 6.4e-18 95.1 192 29.7
Carub.0004s2871 Capsella rubella HOM05D000104 ORTHO05D004024 8.4e-18 94.7 195 30.8
DCAR_005356 Daucus carota HOM05D000104 ORTHO05D004024 8.4e-18 94.7 149 34.2
Phvul.010G100100 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 8.4e-18 94.7 141 34.0
CAN.G78.94 Capsicum annuum HOM05D000104 ORTHO05D004024 1.4e-17 94.0 143 33.6
DCAR_025198 Daucus carota HOM05D000104 ORTHO05D004024 1.4e-17 94.0 149 34.2
Lsat_1_v5_gn_4_35861 Lactuca sativa HOM05D000104 ORTHO05D004024 1.4e-17 94.0 127 38.6
Nitab4.5_0006018g0100 Nicotiana tabacum HOM05D000104 ORTHO05D004024 1.4e-17 94.0 139 37.4
RcHm_v2.0_Chr1g0356661 Rosa chinensis HOM05D000104 ORTHO05D004024 1.4e-17 94.0 194 29.9
THA.LOC104803063 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 1.4e-17 94.0 131 34.4
VMungo0331G0955 Vigna mungo HOM05D000104 ORTHO05D004024 1.9e-17 93.6 129 35.7
Cpa.g.sc11.24 Carica papaya HOM05D000104 ORTHO05D004024 2.4e-17 93.2 138 33.3
SalBow3G2941 Salvia bowleyana HOM05D000104 ORTHO05D004024 2.4e-17 93.2 132 34.8
CDE02G0245 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 3.2e-17 92.8 128 35.2
PSO478G3174 Papaver somniferum HOM05D000104 ORTHO05D004024 3.2e-17 92.8 179 30.2
CANSAT56G1829 Cannabis sativa HOM05D000104 ORTHO05D004024 4.2e-17 92.4 166 30.1
BcaC01g05099 Brassica carinata HOM05D000104 ORTHO05D004024 5.4e-17 92.0 195 29.2
A03p25440 Brassica napus HOM05D000104 ORTHO05D004024 5.4e-17 92.0 195 29.2
BolC3t15384H Brassica oleracea HOM05D000104 ORTHO05D004024 5.4e-17 92.0 195 29.2
BraA03t11763Z Brassica rapa HOM05D000104 ORTHO05D004024 5.4e-17 92.0 195 29.2
Thhalv10001280m.g Eutrema salsugineum HOM05D000104 ORTHO05D004024 5.4e-17 92.0 195 30.3
HanXRQChr04g0121221 Helianthus annuus HOM05D000104 ORTHO05D004024 5.4e-17 92.0 164 34.8
Psat3g107600 Pisum sativum HOM05D000104 ORTHO05D004024 5.4e-17 92.0 135 34.8
arahy.Tifrunner.gnm1.ann1.03HQ0D Arachis hypogaea HOM05D000104 ORTHO05D004024 7.1e-17 91.7 143 32.2
arahy.Tifrunner.gnm1.ann1.K947VD Arachis hypogaea HOM05D000104 ORTHO05D004024 7.1e-17 91.7 143 32.2
MD01G1065800 Malus domestica HOM05D000104 ORTHO05D004024 7.1e-17 91.7 192 31.8
Medtr7g078090 Medicago truncatula HOM05D000104 ORTHO05D004024 7.1e-17 91.7 146 34.9
PSO782G4172 Papaver somniferum HOM05D000104 ORTHO05D004024 7.1e-17 91.7 179 30.2
C04p72040 Brassica napus HOM05D000104 ORTHO05D004024 9.3e-17 91.3 195 31.3
C03p30350 Brassica napus HOM05D000104 ORTHO05D004024 1.2e-16 90.9 195 29.2
Prupe.2G172900 Prunus persica HOM05D000104 ORTHO05D004024 1.2e-16 90.9 195 29.7
Aa31LG1G27420 Aethionema arabicum HOM05D000104 ORTHO05D004024 1.6e-16 90.5 195 29.2
HanXRQChr16g0522331 Helianthus annuus HOM05D000104 ORTHO05D004024 2.1e-16 90.1 154 34.4
CDE06G2476 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 2.7e-16 89.7 146 32.9
FAN03G1309 Fragaria x ananassa HOM05D000104 ORTHO05D004024 2.7e-16 89.7 139 32.4
FAN01G0653 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.6e-16 89.0 139 32.4
FAN06G0929 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.6e-16 89.0 139 32.4
FAN06G2979 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.6e-16 89.0 139 32.4
FAN10G0475 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.6e-16 89.0 139 32.4
FAN10G3702 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.6e-16 89.0 139 32.4
PGR031G3697 Punica granatum HOM05D000104 ORTHO05D004024 4.6e-16 89.0 128 35.9
HanXRQChr17g0562421 Helianthus annuus HOM05D000104 ORTHO05D004024 7.8e-16 88.2 155 32.3
FvH4_7g14720 Fragaria vesca HOM05D000104 ORTHO05D004024 1.7e-15 87.0 139 31.7
TPR.G37713 Trifolium pratense HOM05D000104 ORTHO05D004024 2.3e-15 86.7 129 34.1
SHI13459 Sapria himalayana HOM05D000104 ORTHO05D004024 3.0e-15 86.3 129 31.8
Lsat_1_v5_gn_7_4220 Lactuca sativa HOM05D000104 ORTHO05D004024 3.9e-15 85.9 130 33.8
ECA236G4125 Erigeron canadensis HOM05D000104 ORTHO05D004024 5.1e-15 85.5 130 33.8
Lj1g0023113 Lotus japonicus HOM05D000104 ORTHO05D004024 1.5e-14 84.0 139 29.5
Rhsim01G0162900 Rhododendron simsii HOM05D000104 ORTHO05D004024 1.5e-14 84.0 180 31.7
Ca_07936_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 9.6e-14 81.3 194 28.4
Ah.05g180470 Amaranthus hybridus HOM05D000104 ORTHO05D004024 1.3e-13 80.9 136 32.4
THA.LOC104827600 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 2.8e-13 79.7 129 31.8
ECA234G0162 Erigeron canadensis HOM05D000104 ORTHO05D004024 6.2e-13 78.6 126 31.7
BcaC06g34217 Brassica carinata HOM05D000104 ORTHO05D004024 3.1e-12 76.3 135 30.4
HPP92_022592 Vanilla planifolia HOM05D000104 ORTHO05D004024 6.9e-12 75.1 141 31.2
C07p31570 Brassica napus HOM05D000104 ORTHO05D004024 7.6e-11 71.6 104 32.7
Psat5g241000 Pisum sativum HOM05D000104 ORTHO05D026582 5.4e-09 65.5 145 29.7
Nn1g01574 Nelumbo nucifera HOM05D000104 ORTHO05D004024 1.6e-08 63.9 168 26.8
Nitab4.5_0000583g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004024 1.3e-07 60.8 96 36.5
HanXRQChr16g0522411 Helianthus annuus HOM05D000104 ORTHO05D004024 3.9e-07 59.3 113 31.9
AagrBONN_evm.TU.Sc2ySwM_228.1015 Anthoceros agrestis HOM05D000104 ORTHO05D004024 1.1e-06 57.8 126 29.4
Mapoly0001s0041 Marchantia polymorpha HOM05D000104 ORTHO05D004024 1.5e-06 57.4 131 27.5


User provided reference genes

Program Settings