Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.7e-54 215.7 106 100.0
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 9.5e-21 103.6 95 58.9
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 9.5e-21 103.6 102 56.9
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 1.6e-20 102.8 92 57.6
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 1.6e-20 102.8 92 57.6
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 1.6e-20 102.8 92 58.7
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 2.1e-20 102.4 92 59.8
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 2.1e-20 102.4 92 57.6
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 2.1e-20 102.4 92 57.6
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 2.1e-20 102.4 92 57.6
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 2.1e-20 102.4 92 57.6
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 2.1e-20 102.4 92 58.7
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 2.1e-20 102.4 92 57.6
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 2.8e-20 102.1 92 56.5
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 2.8e-20 102.1 97 55.7
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 3.6e-20 101.7 90 60.0
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 3.6e-20 101.7 92 57.6
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 3.6e-20 101.7 90 57.8
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 4.7e-20 101.3 106 54.7
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 4.7e-20 101.3 92 58.7
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 4.7e-20 101.3 90 57.8
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 8.1e-20 100.5 106 53.8
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 8.1e-20 100.5 99 55.6
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 8.1e-20 100.5 89 58.4
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 8.1e-20 100.5 92 56.5
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 8.1e-20 100.5 88 60.2
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 8.1e-20 100.5 90 60.0
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.1e-19 100.1 90 58.9
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 1.1e-19 100.1 92 58.7
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 1.1e-19 100.1 92 58.7
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 1.1e-19 100.1 90 58.9
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 1.1e-19 100.1 92 57.6
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.1e-19 100.1 92 56.5
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 1.1e-19 100.1 92 58.7
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 1.1e-19 100.1 92 55.4
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.4e-19 99.8 99 55.6
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 1.4e-19 99.8 90 58.9
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 1.4e-19 99.8 90 57.8
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 1.4e-19 99.8 92 56.5
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 1.4e-19 99.8 92 57.6
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.8e-19 99.4 99 55.6
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.8e-19 99.4 90 57.8
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 1.8e-19 99.4 92 57.6
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 1.8e-19 99.4 92 58.7
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 1.8e-19 99.4 90 58.9
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 1.8e-19 99.4 90 58.9
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 2.3e-19 99.0 92 57.6
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 2.3e-19 99.0 92 57.6
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 2.3e-19 99.0 89 57.3
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 2.3e-19 99.0 92 57.6
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 2.3e-19 99.0 89 58.4
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 2.3e-19 99.0 106 52.8
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.3e-19 99.0 99 56.6
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 3.1e-19 98.6 106 54.7
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 3.1e-19 98.6 90 58.9
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 3.1e-19 98.6 90 58.9
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 3.1e-19 98.6 90 58.9
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 3.1e-19 98.6 90 58.9
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 3.1e-19 98.6 90 57.8
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 3.1e-19 98.6 90 57.8
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 4.0e-19 98.2 90 57.8
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 4.0e-19 98.2 90 57.8
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 4.0e-19 98.2 90 57.8
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.0e-19 98.2 90 57.8
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.0e-19 98.2 90 57.8
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 4.0e-19 98.2 90 58.9
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 4.0e-19 98.2 90 57.8
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 4.0e-19 98.2 90 57.8
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 5.2e-19 97.8 98 52.0
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 5.2e-19 97.8 91 57.1
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 6.8e-19 97.4 98 55.1
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 1.2e-18 96.7 89 57.3
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 1.2e-18 96.7 89 57.3
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 1.2e-18 96.7 89 57.3
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 1.2e-18 96.7 89 57.3
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.2e-18 96.7 92 56.5
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.2e-18 96.7 90 54.4
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.2e-18 96.7 90 57.8
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.2e-18 96.7 90 57.8
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 1.5e-18 96.3 106 52.8
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.5e-18 96.3 96 54.2
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.5e-18 96.3 96 54.2
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 1.5e-18 96.3 90 56.7
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 1.5e-18 96.3 90 52.2
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 2.0e-18 95.9 90 53.3
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 2.0e-18 95.9 90 53.3
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 2.0e-18 95.9 90 53.3
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 2.6e-18 95.5 90 56.7
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 3.4e-18 95.1 90 55.6
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 3.4e-18 95.1 106 50.0
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 5.8e-18 94.4 92 54.3
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.3e-17 93.2 91 57.1
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 2.9e-17 92.0 92 53.3
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 4.9e-17 91.3 97 50.5
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 3.2e-16 88.6 86 54.7
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.2e-16 88.6 102 52.0
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 4.1e-16 88.2 90 48.9
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 9.2e-16 87.0 78 57.7
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 2.7e-15 85.5 91 50.5
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 2.7e-15 85.5 88 52.3
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 7.8e-15 84.0 105 46.7
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.0e-14 83.6 117 44.4
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 1.7e-14 82.8 81 55.6
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 3.0e-14 82.0 84 53.6
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 1.5e-13 79.7 88 46.6
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 1.2e-12 76.6 71 54.9
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 2.1e-12 75.9 71 59.2
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 2.8e-12 75.5 71 57.7
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.8e-12 75.5 71 54.9
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 3.6e-12 75.1 69 58.0
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 4.7e-12 74.7 71 57.7
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.7e-12 74.7 90 48.9
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 6.2e-12 74.3 69 58.0
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 8.1e-12 73.9 69 55.1
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 1.1e-11 73.6 71 56.3
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.4e-11 73.2 90 46.7
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 2.3e-11 72.4 69 50.7
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 2.3e-11 72.4 90 47.8
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 2.3e-11 72.4 90 47.8
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 3.4e-10 68.6 69 50.7
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 9.9e-10 67.0 76 46.1
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 1.3e-09 66.6 72 50.0
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 4.6e-07 58.2 39 71.8
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 1.0e-06 57.0 43 60.5
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 3.9e-06 55.1 54 51.9
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 5.1e-06 54.7 39 69.2


User provided reference genes

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