Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 0.0e+00 1865.9 966 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.8e-167 593.6 998 36.6
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 2.6e-165 587.0 975 35.8
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 3.4e-165 586.6 994 36.2
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 2.2e-164 583.9 982 35.4
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 6.4e-164 582.4 976 35.8
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 1.9e-163 580.9 960 35.6
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 1.9e-163 580.9 961 35.6
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 1.9e-163 580.9 960 35.6
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 2.4e-163 580.5 997 35.5
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 3.2e-163 580.1 962 35.7
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 4.1e-163 579.7 957 35.2
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 4.1e-163 579.7 960 35.6
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 4.1e-163 579.7 969 36.3
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 7.0e-163 578.9 953 35.6
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 7.0e-163 578.9 961 35.4
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 1.2e-162 578.2 956 34.8
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 1.2e-162 578.2 964 35.7
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 1.2e-162 578.2 949 35.6
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 1.2e-162 578.2 1065 33.5
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 6.0e-162 575.9 1023 35.1
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 7.8e-162 575.5 956 35.7
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 1.0e-161 575.1 971 35.5
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 1.3e-161 574.7 998 35.9
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 1.7e-161 574.3 962 35.6
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 3.0e-161 573.5 957 35.3
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 5.0e-161 572.8 992 35.2
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 6.6e-161 572.4 989 34.8
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 1.1e-160 571.6 991 34.6
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 1.5e-160 571.2 959 35.5
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 2.5e-160 570.5 964 35.8
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 2.5e-160 570.5 964 35.8
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 3.3e-160 570.1 971 35.3
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 3.3e-160 570.1 963 35.5
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 4.3e-160 569.7 1038 34.6
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 5.6e-160 569.3 961 36.1
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 7.3e-160 568.9 963 35.5
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 7.3e-160 568.9 1031 33.9
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 9.5e-160 568.5 1052 34.8
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 1.2e-159 568.2 955 36.0
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 1.6e-159 567.8 1019 35.5
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 2.1e-159 567.4 991 35.7
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 2.8e-159 567.0 996 35.3
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 3.6e-159 566.6 1034 33.9
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 3.6e-159 566.6 962 35.2
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 4.7e-159 566.2 981 34.7
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 6.2e-159 565.8 1047 33.3
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 1.1e-158 565.1 1025 34.0
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 1.4e-158 564.7 1036 34.3
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 1.8e-158 564.3 987 35.2
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 2.3e-158 563.9 987 34.8
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 5.2e-158 562.8 1000 34.4
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 6.8e-158 562.4 972 34.9
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 8.9e-158 562.0 971 35.6
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 1.2e-157 561.6 1047 34.3
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 1.5e-157 561.2 969 34.4
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 2.0e-157 560.8 997 34.9
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 5.8e-157 559.3 992 35.4
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 1.3e-156 558.1 971 35.0
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 2.2e-156 557.4 994 35.1
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 2.9e-156 557.0 981 34.3
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 2.9e-156 557.0 982 35.2
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 3.7e-156 556.6 990 35.3
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 1.1e-155 555.1 1003 34.4
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 1.4e-155 554.7 964 35.5
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 1.9e-155 554.3 1005 34.4
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 2.4e-155 553.9 1051 33.9
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 9.2e-155 552.0 984 35.0
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 1.6e-154 551.2 1032 34.5
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 2.7e-154 550.4 972 34.6
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 3.5e-154 550.1 984 34.7
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 3.5e-154 550.1 965 34.4
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 1.0e-153 548.5 973 34.5
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 1.0e-153 548.5 1064 33.6
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 3.9e-153 546.6 985 34.9
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 3.9e-153 546.6 995 33.4
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 1.5e-152 544.7 964 34.3
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 5.6e-152 542.7 1044 33.9
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.6e-152 542.7 991 34.7
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 7.3e-152 542.3 971 34.6
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 7.3e-152 542.3 989 34.0
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 8.1e-151 538.9 974 34.4
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 5.8e-149 532.7 993 34.8
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 7.6e-149 532.3 992 33.9
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 2.7e-146 523.9 1003 33.9
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 6.9e-142 509.2 978 33.3
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 4.4e-141 506.5 975 33.6
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 1.6e-138 498.0 1169 30.0
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 1.0e-137 495.4 896 34.3
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 1.5e-133 481.5 824 36.4
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 3.8e-132 476.9 830 34.9
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 3.8e-132 476.9 941 33.0
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 6.0e-130 469.5 881 34.4
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 5.1e-129 466.5 855 33.9
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 7.9e-114 416.0 970 30.2
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 2.6e-109 401.0 955 31.6
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 4.2e-107 393.7 915 32.9
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 1.3e-95 355.5 1293 27.0
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 3.7e-95 354.0 700 31.7
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 1.7e-92 345.1 733 31.0
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 2.6e-88 331.3 979 27.4
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.7e-82 311.2 602 33.1
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 3.3e-80 304.3 346 43.1
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 4.8e-79 300.4 355 45.1
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 9.1e-78 296.2 863 29.1
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.3e-76 292.4 362 42.8
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 2.2e-76 291.6 762 30.2
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 1.5e-75 288.9 355 42.3
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 1.9e-75 288.5 344 43.0
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 5.5e-75 287.0 381 41.2
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 7.2e-75 286.6 649 31.1
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 1.2e-74 285.8 356 41.9
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 1.2e-66 259.2 393 38.2
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 3.3e-59 234.6 289 39.1
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 3.6e-58 231.1 259 44.4
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.0e-58 229.9 307 42.7
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 2.6e-56 224.9 250 45.6
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 6.4e-55 220.3 245 44.9
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.0e-44 184.9 167 48.5
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 1.1e-41 176.4 172 47.1
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.4e-40 171.4 245 38.4
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 4.6e-37 161.0 218 39.9
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-33 149.8 256 35.9
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 8.9e-33 146.7 182 42.3
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.3e-31 142.9 171 41.5
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.4e-24 118.2 129 48.1
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 1.1e-22 113.2 143 43.4
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 1.9e-22 112.5 141 41.8
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.0e-20 105.1 109 43.1
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.8e-18 98.6 166 33.7
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 4.0e-17 94.7 160 36.2
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.7e-15 89.4 140 36.4
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 1.9e-14 85.9 103 41.7
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 4.6e-13 81.3 83 44.6
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.6e-13 81.3 129 35.7
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.9e-11 75.9 129 34.9
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 1.4e-09 69.7 207 28.5
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 1.5e-08 66.2 214 27.6
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 2.0e-08 65.9 97 39.2
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 2.0e-08 65.9 131 32.8
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.7e-07 62.8 84 42.9
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 2.9e-07 62.0 81 35.8
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 2.5e-06 58.9 42 57.1


User provided reference genes

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