Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 2.5e-247 858.6 522 100.0
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 8.9e-96 355.1 464 42.2
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 1.1e-93 348.2 476 42.9
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 3.6e-89 333.2 466 43.1
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 4.4e-87 326.2 461 41.2
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.7e-86 324.3 465 40.9
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 4.9e-86 322.8 461 42.5
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 2.4e-85 320.5 481 41.0
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.2e-85 320.1 464 41.4
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 1.2e-84 318.2 477 41.3
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 2.7e-84 317.0 477 40.5
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 2.7e-84 317.0 477 40.5
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 7.8e-84 315.5 458 42.1
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 7.8e-84 315.5 466 41.0
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 1.0e-83 315.1 477 39.6
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 1.3e-83 314.7 519 38.5
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 2.3e-83 313.9 458 40.6
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 8.7e-83 312.0 478 40.8
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 8.7e-83 312.0 465 40.6
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 1.1e-82 311.6 478 40.0
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 1.5e-82 311.2 480 39.4
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 1.5e-82 311.2 477 40.3
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.5e-82 311.2 477 40.0
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 1.9e-82 310.8 477 39.6
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 1.9e-82 310.8 465 40.6
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.3e-82 310.1 465 40.9
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 5.6e-82 309.3 477 39.6
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 7.3e-82 308.9 465 40.6
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 1.3e-81 308.1 488 38.9
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 1.6e-81 307.8 458 40.8
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 1.6e-81 307.8 477 39.0
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 3.6e-81 306.6 461 40.6
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 3.6e-81 306.6 457 39.6
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 3.6e-81 306.6 465 40.2
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.1e-80 305.1 462 40.3
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 1.4e-80 304.7 495 39.2
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 2.4e-80 303.9 458 40.4
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 4.0e-80 303.1 477 39.8
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 5.3e-80 302.8 462 40.3
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 6.9e-80 302.4 478 39.7
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 9.0e-80 302.0 477 40.7
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 1.2e-79 301.6 522 37.2
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.5e-79 301.2 478 39.3
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 1.5e-79 301.2 478 39.1
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 2.0e-79 300.8 458 40.4
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 2.6e-79 300.4 468 40.4
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 3.4e-79 300.1 477 39.0
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 3.4e-79 300.1 474 39.0
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 4.5e-79 299.7 477 38.6
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 4.5e-79 299.7 482 38.0
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 4.5e-79 299.7 457 40.0
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 5.8e-79 299.3 466 39.1
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 7.6e-79 298.9 450 40.0
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.7e-78 297.7 462 39.8
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.7e-78 297.7 466 39.1
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 2.2e-78 297.4 465 39.6
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 4.9e-78 296.2 465 38.9
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 4.9e-78 296.2 450 39.8
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 4.9e-78 296.2 478 39.1
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 6.4e-78 295.8 488 37.7
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 6.4e-78 295.8 450 39.8
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 6.4e-78 295.8 458 40.2
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 8.4e-78 295.4 466 39.1
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 8.4e-78 295.4 465 37.4
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 4.2e-77 293.1 468 38.2
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 7.1e-77 292.4 465 39.1
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 9.3e-77 292.0 465 39.4
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 9.3e-77 292.0 465 39.4
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 1.2e-76 291.6 461 39.7
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 3.5e-76 290.0 466 37.8
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 7.9e-76 288.9 478 36.8
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 2.3e-75 287.3 465 36.6
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 2.3e-75 287.3 476 38.2
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 2.3e-75 287.3 476 38.2
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 3.9e-75 286.6 466 37.8
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 5.1e-75 286.2 464 37.7
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 1.1e-74 285.0 481 36.0
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 1.9e-74 284.3 466 38.6
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 4.3e-74 283.1 438 40.2
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 5.6e-74 282.7 475 38.7
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 7.4e-74 282.3 465 37.2
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 2.1e-73 280.8 477 37.7
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 2.8e-73 280.4 466 38.6
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 3.7e-73 280.0 469 37.7
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 8.1e-73 278.9 467 38.3
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 1.1e-72 278.5 477 36.1
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 1.4e-72 278.1 465 36.1
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 1.4e-72 278.1 464 38.6
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 2.4e-72 277.3 464 38.1
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 5.3e-72 276.2 465 37.8
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 6.9e-72 275.8 465 37.4
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.2e-71 275.0 475 36.2
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 1.2e-71 275.0 455 38.0
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 2.6e-71 273.9 452 37.8
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 4.5e-71 273.1 464 37.3
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 5.8e-71 272.7 479 35.7
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 7.6e-71 272.3 461 38.4
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 1.0e-70 271.9 491 36.9
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 1.3e-70 271.6 464 36.9
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 1.7e-70 271.2 465 37.2
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 1.7e-70 271.2 464 36.9
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 3.8e-70 270.0 464 36.2
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 4.9e-70 269.6 477 35.6
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 1.1e-69 268.5 464 36.0
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 1.4e-69 268.1 439 37.8
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 1.9e-69 267.7 464 36.0
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 1.9e-69 267.7 464 36.0
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 2.5e-69 267.3 464 35.8
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 2.1e-68 264.2 480 38.1
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 7.9e-68 262.3 464 35.6
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 1.8e-67 261.2 458 37.6
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 5.1e-67 259.6 491 35.4
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 1.1e-66 258.5 545 33.2
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 1.9e-66 257.7 306 45.8
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 2.5e-66 257.3 497 34.8
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 3.3e-66 256.9 465 35.3
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 7.4e-66 255.8 494 34.0
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 8.2e-65 252.3 458 35.8
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 3.1e-64 250.4 466 34.5
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 4.6e-60 236.5 256 49.6
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.4e-56 224.9 463 32.0
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 1.2e-55 221.9 400 34.0
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.0e-54 218.8 411 35.8
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 3.8e-54 216.9 297 41.4
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 3.6e-52 210.3 208 50.0
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 4.3e-50 203.4 461 31.2
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 1.7e-49 201.4 253 42.3
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 1.3e-46 191.8 485 30.1
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 8.8e-43 179.1 181 54.7
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 1.3e-38 165.2 162 51.2
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 1.9e-37 161.4 278 40.3
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.9e-37 161.4 413 29.1
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 3.6e-36 157.1 349 32.7
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 5.2e-35 153.3 256 38.3
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 8.2e-33 146.0 188 41.5
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 7.0e-32 142.9 150 47.3
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.1e-32 142.5 154 49.4
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 5.2e-27 126.7 198 39.9
HPP92_000027 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.7e-25 121.7 137 51.1
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 4.1e-24 117.1 295 30.2
EL10Ac2g02713 Beta vulgaris HOM05D003501 ORTHO05D004388 8.5e-22 109.4 95 53.7
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 9.4e-21 105.9 282 28.7
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-20 105.5 90 55.6
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.7e-20 104.4 279 27.2
CAN.G953.12 Capsicum annuum HOM05D003501 ORTHO05D004388 1.4e-19 102.1 160 36.2
Lsat_1_v5_gn_2_70781 Lactuca sativa HOM05D003501 ORTHO05D004388 9.8e-18 95.9 101 48.5
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.8e-16 91.7 264 26.1
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 5.4e-16 90.1 79 55.7
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 4.5e-15 87.0 240 29.2
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.3e-14 85.5 173 38.2
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.3e-14 84.7 100 41.0
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 3.8e-14 84.0 159 35.8
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.6e-14 82.8 100 40.0
Mapoly0071s0005 Marchantia polymorpha HOM05D003501 ORTHO05D018303 1.9e-13 81.6 284 28.2
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.5e-13 80.1 100 40.0
HPP92_000028 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.0e-11 75.9 86 47.7
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.4e-11 75.5 86 47.7
Cre01.g053288 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D018303 3.0e-11 74.3 277 25.6
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.0e-11 74.3 74 48.6
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.2e-11 73.6 74 48.6
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 8.9e-11 72.8 83 47.0
Actinidia15652 Actinidia chinensis HOM05D003501 ORTHO05D004388 3.4e-10 70.9 70 55.7
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.7e-09 68.6 74 45.9
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.9e-09 67.0 89 41.6
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 7.0e-08 63.2 56 53.6
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 7.0e-08 63.2 58 55.2
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.0e-07 61.6 59 50.8
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.5e-07 60.8 87 46.0
HPP92_028227 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.5e-07 60.8 66 53.0


User provided reference genes

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