Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 1.0e-142 510.0 242 100.0
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 1.3e-81 307.0 226 62.8
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 3.8e-81 305.4 237 60.8
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 1.4e-80 303.5 225 61.8
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 4.2e-80 302.0 239 59.0
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.4e-80 301.6 227 60.8
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 2.1e-79 299.7 240 56.7
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 2.7e-79 299.3 225 62.7
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 2.7e-79 299.3 236 59.3
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 2.7e-79 299.3 225 62.7
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 6.0e-79 298.1 225 61.8
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 6.0e-79 298.1 235 62.1
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 6.0e-79 298.1 225 61.3
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 6.0e-79 298.1 225 61.3
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 7.9e-79 297.7 233 60.1
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 1.0e-78 297.4 226 61.5
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 1.0e-78 297.4 240 58.3
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 1.3e-78 297.0 226 61.9
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 1.3e-78 297.0 227 59.5
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 2.3e-78 296.2 226 62.4
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 2.3e-78 296.2 225 60.9
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 3.0e-78 295.8 240 57.5
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 3.9e-78 295.4 226 61.1
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 5.1e-78 295.0 239 55.6
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 6.6e-78 294.7 227 63.0
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 8.7e-78 294.3 246 56.5
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 8.7e-78 294.3 226 62.4
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 1.5e-77 293.5 226 60.2
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 1.9e-77 293.1 237 59.5
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 2.5e-77 292.7 225 60.0
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 4.3e-77 292.0 231 60.6
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 4.3e-77 292.0 233 58.8
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 4.3e-77 292.0 226 60.2
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 5.6e-77 291.6 226 60.2
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 5.6e-77 291.6 234 59.4
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 7.3e-77 291.2 240 58.8
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 7.3e-77 291.2 226 61.1
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 7.3e-77 291.2 225 58.2
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 7.3e-77 291.2 226 60.2
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 1.3e-76 290.4 227 60.8
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 1.3e-76 290.4 233 58.4
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 1.6e-76 290.0 236 56.4
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 1.6e-76 290.0 231 57.6
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 2.8e-76 289.3 226 60.6
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 2.8e-76 289.3 237 57.0
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 4.8e-76 288.5 226 59.7
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 4.8e-76 288.5 241 57.3
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 4.8e-76 288.5 241 57.3
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 4.8e-76 288.5 241 57.3
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 6.2e-76 288.1 227 60.4
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 6.2e-76 288.1 228 59.6
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 8.1e-76 287.7 226 61.5
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 8.1e-76 287.7 225 58.7
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 8.1e-76 287.7 227 60.8
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 8.1e-76 287.7 225 60.0
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 8.1e-76 287.7 237 58.2
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 1.4e-75 287.0 227 58.1
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.4e-75 287.0 226 58.4
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 1.8e-75 286.6 226 59.3
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 2.4e-75 286.2 226 58.8
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 2.4e-75 286.2 226 58.8
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 2.4e-75 286.2 241 56.8
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 2.4e-75 286.2 226 60.2
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 5.3e-75 285.0 240 57.5
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 5.3e-75 285.0 240 57.5
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 5.3e-75 285.0 240 57.5
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 5.3e-75 285.0 260 55.0
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 6.9e-75 284.6 228 58.8
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 1.2e-74 283.9 243 56.8
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 2.6e-74 282.7 228 58.3
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 4.5e-74 282.0 228 58.8
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 5.8e-74 281.6 228 58.8
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 7.6e-74 281.2 236 58.5
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 9.9e-74 280.8 227 56.8
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 2.2e-73 279.6 231 56.7
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 3.8e-73 278.9 228 57.9
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 4.9e-73 278.5 227 59.0
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 6.4e-73 278.1 265 50.9
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 3.2e-72 275.8 243 55.1
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 4.2e-72 275.4 235 57.0
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 4.2e-72 275.4 256 53.9
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 1.2e-71 273.9 226 57.5
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 1.2e-71 273.9 228 57.0
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.2e-71 273.9 227 57.3
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 2.1e-71 273.1 218 61.5
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 7.9e-71 271.2 213 59.6
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 7.9e-71 271.2 228 57.0
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 6.7e-70 268.1 241 55.2
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 8.7e-70 267.7 244 53.7
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.1e-69 267.3 219 58.0
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 4.3e-69 265.4 212 59.9
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 4.3e-69 265.4 203 60.6
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 4.3e-69 265.4 213 58.7
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 5.6e-69 265.0 278 49.3
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 1.3e-68 263.8 205 62.4
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 6.2e-68 261.5 204 61.8
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 2.4e-67 259.6 209 60.3
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 6.9e-67 258.1 210 57.6
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 9.0e-67 257.7 266 51.9
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 7.6e-66 254.6 218 57.8
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 1.0e-65 254.2 204 59.3
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.3e-65 253.8 212 55.7
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 1.7e-65 253.4 218 58.3
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 3.8e-65 252.3 225 53.3
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.1e-64 250.8 212 55.2
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 1.9e-64 250.0 228 53.1
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 4.2e-64 248.8 227 54.2
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 6.0e-63 245.0 205 57.6
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 5.1e-62 241.9 216 54.2
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 2.8e-60 236.1 178 62.4
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 1.5e-58 230.3 195 54.4
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 3.4e-58 229.2 184 59.8
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 7.6e-58 228.0 205 54.6
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 7.6e-58 228.0 159 64.2
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 1.7e-57 226.9 279 43.0
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 1.9e-53 213.4 180 54.4
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 3.3e-53 212.6 216 48.1
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.1e-51 207.6 221 48.4
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 6.1e-39 165.2 197 43.1
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.0e-38 164.5 197 42.6
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 2.3e-38 163.3 132 60.6
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.0e-37 160.2 197 42.6
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 3.3e-37 159.5 130 57.7
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.7e-36 156.0 197 41.6
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 4.5e-34 149.1 119 57.1
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 1.1e-32 144.4 100 67.0
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 5.5e-32 142.1 120 55.0
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.5e-32 142.1 184 40.8
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 7.2e-32 141.7 197 38.6
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 2.7e-31 139.8 175 44.6
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 3.6e-31 139.4 230 37.8
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 2.0e-29 133.7 125 53.6
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 4.4e-29 132.5 97 60.8
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.0e-26 123.6 197 35.5
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 5.9e-26 122.1 97 59.8
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 5.0e-25 119.0 188 38.8
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 8.5e-25 118.2 197 35.0
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.5e-24 115.5 184 35.3
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 5.5e-24 115.5 184 35.3
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.6e-23 114.0 195 33.3
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 3.6e-23 112.8 104 54.8
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.8e-22 108.6 197 31.5
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 1.8e-19 100.5 86 57.0
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 7.7e-18 95.1 83 47.0
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 1.7e-17 94.0 95 51.6
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 1.7e-17 94.0 181 31.5
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 1.5e-16 90.9 161 36.0
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 1.2e-13 81.3 197 28.4
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.8e-09 66.2 102 34.3
Pp3c9_17820 Physcomitrium patens HOM05D004663 ORTHO05D318098 9.5e-08 61.6 67 44.8


User provided reference genes

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