Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.4e-174 616.3 335 100.0
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 7.8e-85 318.2 329 55.0
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.0e-84 317.8 329 55.3
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 1.3e-84 317.4 329 55.0
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 3.0e-84 316.2 328 54.0
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 5.0e-84 315.5 331 54.7
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 6.6e-84 315.1 329 54.7
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 1.5e-83 313.9 330 53.9
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.9e-83 313.5 330 53.6
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 2.5e-83 313.2 330 50.3
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 2.5e-83 313.2 328 53.0
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 3.3e-83 312.8 330 53.9
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 3.3e-83 312.8 329 53.2
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 4.3e-83 312.4 330 53.6
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 4.3e-83 312.4 330 53.6
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 4.3e-83 312.4 330 53.9
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 5.6e-83 312.0 329 53.8
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 9.5e-83 311.2 336 53.3
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.2e-82 310.8 334 52.7
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.2e-82 310.8 330 53.3
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.6e-82 310.5 331 53.5
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.1e-82 310.1 330 53.6
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 2.1e-82 310.1 330 53.9
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 2.8e-82 309.7 323 55.7
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 2.8e-82 309.7 330 53.6
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 2.8e-82 309.7 330 53.6
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-82 308.9 330 53.3
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 6.2e-82 308.5 332 53.9
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 8.0e-82 308.1 329 52.6
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 8.0e-82 308.1 334 53.0
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 1.1e-81 307.8 330 53.0
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 1.4e-81 307.4 329 50.5
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 1.4e-81 307.4 329 54.7
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.8e-81 307.0 330 52.7
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 1.8e-81 307.0 330 53.3
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 1.8e-81 307.0 330 53.0
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 3.1e-81 306.2 331 53.2
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 5.2e-81 305.4 329 52.6
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 5.2e-81 305.4 330 47.0
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 5.2e-81 305.4 330 54.5
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 6.8e-81 305.1 330 51.5
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 6.8e-81 305.1 331 52.6
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 6.8e-81 305.1 332 54.2
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 8.9e-81 304.7 329 52.0
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.2e-80 304.3 330 51.8
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.2e-80 304.3 330 52.1
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 1.2e-80 304.3 331 52.3
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 1.5e-80 303.9 334 52.4
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 1.5e-80 303.9 332 53.9
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 2.0e-80 303.5 330 52.7
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.0e-80 303.5 329 52.6
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 2.0e-80 303.5 328 53.4
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.6e-80 303.1 331 51.7
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 2.6e-80 303.1 331 50.2
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 3.4e-80 302.8 330 51.8
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 5.8e-80 302.0 331 50.5
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 5.8e-80 302.0 330 51.8
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 7.5e-80 301.6 330 52.4
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 9.8e-80 301.2 331 49.8
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 9.8e-80 301.2 342 52.3
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 9.8e-80 301.2 329 52.9
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 2.2e-79 300.1 330 52.4
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 2.9e-79 299.7 337 52.2
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 2.9e-79 299.7 352 50.3
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 4.9e-79 298.9 330 52.7
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 4.9e-79 298.9 345 51.6
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 4.9e-79 298.9 330 51.8
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 6.4e-79 298.5 316 53.5
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 8.3e-79 298.1 331 52.3
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 8.3e-79 298.1 331 52.3
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 1.1e-78 297.7 325 52.9
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.4e-78 297.4 330 52.1
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 1.4e-78 297.4 330 52.4
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 1.4e-78 297.4 330 52.4
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 1.9e-78 297.0 328 52.7
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.9e-78 297.0 345 50.7
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 3.2e-78 296.2 330 51.8
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 4.1e-78 295.8 348 50.6
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 4.1e-78 295.8 348 50.6
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 4.1e-78 295.8 333 51.7
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 9.2e-78 294.7 316 53.2
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 1.2e-77 294.3 330 52.4
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 1.2e-77 294.3 330 52.4
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.6e-77 293.9 324 51.9
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 1.6e-77 293.9 340 50.9
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.6e-77 293.9 333 51.1
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 2.7e-77 293.1 340 50.6
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 2.7e-77 293.1 316 52.5
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.7e-77 293.1 330 52.1
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.7e-77 293.1 330 52.1
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 4.6e-77 292.4 326 51.8
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.0e-76 291.2 358 49.2
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.3e-76 290.0 323 52.9
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.3e-76 290.0 323 52.9
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 3.0e-76 289.7 331 50.8
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 3.9e-76 289.3 365 49.0
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 6.6e-76 288.5 347 51.0
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 2.1e-74 283.5 330 50.6
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 8.1e-74 281.6 330 50.6
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.4e-73 280.8 359 48.5
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 5.2e-73 278.9 370 46.8
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 1.2e-72 277.7 283 57.2
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 1.9e-70 270.4 382 42.4
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.1e-69 266.9 329 49.5
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.6e-69 265.8 330 50.3
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 7.8e-69 265.0 300 52.0
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.3e-68 264.2 327 49.8
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 2.5e-67 260.0 349 49.0
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.4e-65 253.4 358 46.4
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.4e-65 253.4 358 46.4
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 5.2e-65 252.3 217 56.2
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 6.8e-65 251.9 329 41.3
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 6.0e-61 238.8 292 51.0
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 3.9e-60 236.1 328 43.9
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 9.6e-59 231.5 270 51.9
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 4.4e-56 222.6 274 48.5
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.1e-54 218.0 510 33.9
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.1e-54 215.3 330 43.9
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 4.6e-53 212.6 325 43.4
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.3e-52 211.1 277 49.8
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 3.6e-50 203.0 250 51.6
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 1.1e-49 201.4 304 44.1
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 3.1e-49 199.9 317 43.5
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 9.0e-49 198.4 162 56.2
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 2.1e-42 177.2 172 50.6
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 2.3e-36 157.1 107 61.7
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 2.6e-32 143.7 204 51.5
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.4e-25 120.6 77 67.5
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 2.5e-22 110.5 203 34.0
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.8e-20 104.4 90 52.2
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 3.7e-18 96.7 344 26.5
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 1.8e-17 94.4 162 41.4
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.3e-12 77.4 45 71.1
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 3.9e-12 76.6 86 44.2
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.5e-11 74.7 86 44.2
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 6.3e-10 69.3 54 53.7
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 5.5e-06 56.2 37 62.2
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 7.2e-06 55.8 41 61.0
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 9.4e-06 55.5 53 49.1


User provided reference genes

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