Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G274 Micromonas commoda HOM05D004285 ORTHO05D005176 2.2e-84 316.2 245 100.0
Sc03g0010160 Simmondsia chinensis HOM05D004285 ORTHO05D005176 4.9e-20 102.4 149 40.3
Cpa.g.sc37.8 Carica papaya HOM05D004285 ORTHO05D005176 1.4e-19 100.9 149 39.6
Prupe.4G274300 Prunus persica HOM05D004285 ORTHO05D005176 1.4e-19 100.9 149 40.3
CiPaw.03G117900 Carya illinoinensis HOM05D004285 ORTHO05D005176 1.9e-19 100.5 149 39.6
Mapoly0073s0065 Marchantia polymorpha HOM05D004285 ORTHO05D005176 1.9e-19 100.5 150 40.0
BcaNung04632 Brassica carinata HOM05D004285 ORTHO05D005176 2.4e-19 100.1 149 40.3
BcaNung04637 Brassica carinata HOM05D004285 ORTHO05D005176 2.4e-19 100.1 149 40.3
Thecc.01G137100 Theobroma cacao HOM05D004285 ORTHO05D005176 2.4e-19 100.1 149 39.6
AT5G63880 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 3.2e-19 99.8 149 40.3
Carub.0008s2465 Capsella rubella HOM05D004285 ORTHO05D005176 3.2e-19 99.8 149 40.3
AUR62012692 Chenopodium quinoa HOM05D004285 ORTHO05D005176 3.2e-19 99.8 149 38.9
AUR62021963 Chenopodium quinoa HOM05D004285 ORTHO05D005176 3.2e-19 99.8 149 38.9
MD15G1135100 Malus domestica HOM05D004285 ORTHO05D005176 4.1e-19 99.4 150 39.3
PGR102G2430 Punica granatum HOM05D004285 ORTHO05D005176 4.1e-19 99.4 149 39.6
QL10p041258 Quercus lobata HOM05D004285 ORTHO05D005176 4.1e-19 99.4 149 38.9
QL10p041526 Quercus lobata HOM05D004285 ORTHO05D005176 4.1e-19 99.4 149 38.9
SGA_v2.0_scaffold12G06217 Striga asiatica HOM05D004285 ORTHO05D005176 4.1e-19 99.4 149 39.6
ECA234G4310 Erigeron canadensis HOM05D004285 ORTHO05D005176 5.4e-19 99.0 149 39.6
Duzib187G0355 Durio zibethinus HOM05D004285 ORTHO05D005176 7.1e-19 98.6 149 38.9
HanXRQChr09g0241311 Helianthus annuus HOM05D004285 ORTHO05D005176 7.1e-19 98.6 149 40.3
Hund21406 Selenicereus undatus HOM05D004285 ORTHO05D005176 7.1e-19 98.6 149 39.6
Sp2g26940 Schrenkiella parvula HOM05D004285 ORTHO05D005176 9.2e-19 98.2 149 39.6
EL10Ac8g20044 Beta vulgaris HOM05D004285 ORTHO05D005176 1.2e-18 97.8 149 38.9
BcaB02g09769 Brassica carinata HOM05D004285 ORTHO05D005176 1.2e-18 97.8 149 39.6
CARHR277780 Cardamine hirsuta HOM05D004285 ORTHO05D005176 1.2e-18 97.8 149 39.6
Lj1g0004585 Lotus japonicus HOM05D004285 ORTHO05D005176 1.2e-18 97.8 149 38.3
Aa31LG1G18000 Aethionema arabicum HOM05D004285 ORTHO05D005176 1.6e-18 97.4 149 39.6
Cc03_g16000 Coffea canephora HOM05D004285 ORTHO05D005176 1.6e-18 97.4 149 39.6
Gohir.A05G382800 Gossypium hirsutum HOM05D004285 ORTHO05D005176 1.6e-18 97.4 149 38.3
Gohir.D04G032400 Gossypium hirsutum HOM05D004285 ORTHO05D005176 1.6e-18 97.4 149 38.3
Gorai.012G036800 Gossypium raimondii HOM05D004285 ORTHO05D005176 1.6e-18 97.4 149 38.3
MBI04_g38139_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 1.6e-18 97.4 149 39.6
Lalb_Chr11g0068611 Lupinus albus HOM05D004285 ORTHO05D005176 2.1e-18 97.1 149 37.6
GSVIVG01029745001 Vitis vinifera HOM05D004285 ORTHO05D005176 2.1e-18 97.1 150 38.0
BcaC01g02639 Brassica carinata HOM05D004285 ORTHO05D005176 2.7e-18 96.7 149 38.9
C03p62560 Brassica napus HOM05D004285 ORTHO05D005176 2.7e-18 96.7 149 38.9
BolC3t18513H Brassica oleracea HOM05D004285 ORTHO05D005176 2.7e-18 96.7 149 38.9
Ca_16982_v3 Cicer arietinum L. HOM05D004285 ORTHO05D005176 2.7e-18 96.7 149 38.9
Psat5g059640 Pisum sativum HOM05D004285 ORTHO05D005176 2.7e-18 96.7 149 38.9
A06p30500 Brassica napus HOM05D004285 ORTHO05D005176 3.5e-18 96.3 149 38.9
Dinv12984 Davidia involucrata HOM05D004285 ORTHO05D005176 4.6e-18 95.9 149 38.9
RcHm_v2.0_Chr4g0406031 Rosa chinensis HOM05D004285 ORTHO05D005176 4.6e-18 95.9 149 37.6
Thhalv10004899m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 6.0e-18 95.5 149 38.9
FvH4_4g10490 Fragaria vesca HOM05D004285 ORTHO05D005176 6.0e-18 95.5 149 37.6
FAN22G0010 Fragaria x ananassa HOM05D004285 ORTHO05D005176 6.0e-18 95.5 149 37.6
Nitab4.5_0000668g0170 Nicotiana tabacum HOM05D004285 ORTHO05D005176 6.0e-18 95.5 149 38.9
Nitab4.5_0009744g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 6.0e-18 95.5 149 38.9
Peaxi162Scf00169g00092 Petunia axillaris HOM05D004285 ORTHO05D005176 6.0e-18 95.5 149 38.9
Sopen12g032480 Solanum pennellii HOM05D004285 ORTHO05D005176 6.0e-18 95.5 149 38.9
TPR.G33552 Trifolium pratense HOM05D004285 ORTHO05D005176 6.0e-18 95.5 149 37.6
AL6G19650 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 7.8e-18 95.1 149 38.3
AT5G09260 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 7.8e-18 95.1 149 38.3
Lj4g0011662 Lotus japonicus HOM05D004285 ORTHO05D005176 7.8e-18 95.1 149 37.6
Lalb_Chr08g0238191 Lupinus albus HOM05D004285 ORTHO05D005176 1.0e-17 94.7 149 37.6
TPR.G24222 Trifolium pratense HOM05D004285 ORTHO05D005176 1.0e-17 94.7 149 37.6
CsaV3_4G030940 Cucumis sativus L. HOM05D004285 ORTHO05D005176 1.3e-17 94.4 149 37.6
Manes.06G003800 Manihot esculenta HOM05D004285 ORTHO05D005176 1.3e-17 94.4 149 37.6
SMO232G0091 Selaginella moellendorffii HOM05D004285 ORTHO05D005176 1.3e-17 94.4 151 38.4
TAR376G0205 Trochodendron aralioides HOM05D004285 ORTHO05D005176 1.3e-17 94.4 149 38.9
VMungo1309G0657 Vigna mungo HOM05D004285 ORTHO05D005176 1.3e-17 94.4 149 37.6
CSS0033426 Camellia sinensis var. sinensis HOM05D004285 ORTHO05D005176 1.7e-17 94.0 149 38.3
MELO3C008970.2 Cucumis melo HOM05D004285 ORTHO05D005176 1.7e-17 94.0 149 37.6
Duzib264G0533 Durio zibethinus HOM05D004285 ORTHO05D005176 1.7e-17 94.0 149 36.9
PSO675G1889 Papaver somniferum HOM05D004285 ORTHO05D005176 1.7e-17 94.0 149 38.9
unitig_736.g22477 Utricularia gibba HOM05D004285 ORTHO05D005176 1.7e-17 94.0 149 38.3
Aqoxy6G00309 Aquilegia oxysepala HOM05D004285 ORTHO05D005176 2.3e-17 93.6 149 36.9
Glyma.04G210200 Glycine max HOM05D004285 ORTHO05D005176 2.3e-17 93.6 149 36.9
Glyma.06G155800 Glycine max HOM05D004285 ORTHO05D005176 2.3e-17 93.6 149 36.9
Phvul.009G154500 Phaseolus vulgaris HOM05D004285 ORTHO05D005176 2.3e-17 93.6 149 37.6
Atru.chr4.994 Acer truncatum HOM05D004285 ORTHO05D005176 3.0e-17 93.2 149 37.6
PSO407G0164 Papaver somniferum HOM05D004285 ORTHO05D005176 3.0e-17 93.2 149 38.9
Potri.005G067700 Populus trichocarpa HOM05D004285 ORTHO05D005176 3.0e-17 93.2 149 37.6
Sabra05G0055600 Salix brachista HOM05D004285 ORTHO05D005176 3.0e-17 93.2 149 37.6
Sed0015518 Sechium edule HOM05D004285 ORTHO05D005176 3.0e-17 93.2 149 36.9
CDE08G1470 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 3.9e-17 92.8 144 37.5
Ciclev10002389m.g Citrus clementina HOM05D004285 ORTHO05D005176 3.9e-17 92.8 149 38.3
TWI79G0936 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 3.9e-17 92.8 149 37.6
arahy.Tifrunner.gnm1.ann1.054DCV Arachis hypogaea HOM05D004285 ORTHO05D005176 5.1e-17 92.4 149 36.9
arahy.Tifrunner.gnm1.ann1.GQS5IM Arachis hypogaea HOM05D004285 ORTHO05D005176 5.1e-17 92.4 149 36.9
Cfa002202 Carpinus fangiana HOM05D004285 ORTHO05D005176 5.1e-17 92.4 149 38.9
PSO170G3147 Papaver somniferum HOM05D004285 ORTHO05D005176 5.1e-17 92.4 149 39.6
Potri.007G101500 Populus trichocarpa HOM05D004285 ORTHO05D005176 5.1e-17 92.4 149 37.6
TWI75G0304 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 5.1e-17 92.4 149 37.6
TAR628G0040 Trochodendron aralioides HOM05D004285 ORTHO05D005176 5.1e-17 92.4 149 36.9
Oeu050306.1 Olea europaea HOM05D004285 ORTHO05D005176 6.6e-17 92.0 149 36.9
Actinidia20030 Actinidia chinensis HOM05D004285 ORTHO05D005176 8.7e-17 91.7 149 37.6
MSTRG.22052 Avicennia marina HOM05D004285 ORTHO05D005176 8.7e-17 91.7 149 36.9
CANSAT80G1716 Cannabis sativa HOM05D004285 ORTHO05D005176 8.7e-17 91.7 149 37.6
CDE02G0727 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 8.7e-17 91.7 149 36.9
VMungo1309G3080 Vigna mungo HOM05D004285 ORTHO05D005176 1.1e-16 91.3 164 36.0
HPP92_022156 Vanilla planifolia HOM05D004285 ORTHO05D005176 1.9e-16 90.5 149 38.3
ATR0706G129 Amborella trichopoda HOM05D004285 ORTHO05D005176 2.5e-16 90.1 149 35.6
AagrBONN_evm.TU.Sc2ySwM_228.3779 Anthoceros agrestis HOM05D004285 ORTHO05D005176 2.5e-16 90.1 153 37.9
AL8G41110 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 2.5e-16 90.1 149 36.9
DCAR_001476 Daucus carota HOM05D004285 ORTHO05D005176 3.3e-16 89.7 149 36.9
THA.LOC104819347 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 3.3e-16 89.7 149 36.2
Sabra07G0083700 Salix brachista HOM05D004285 ORTHO05D005176 5.6e-16 89.0 149 35.6
Zm00001eb246180 Zea mays HOM05D004285 ORTHO05D005176 5.6e-16 89.0 149 36.9
FAN12G0473 Fragaria x ananassa HOM05D004285 ORTHO05D005176 2.8e-15 86.7 128 38.3
THA.LOC104818421 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 2.8e-15 86.7 149 35.6
CBR_g70720 Chara braunii HOM05D004285 ORTHO05D005176 3.6e-15 86.3 153 37.9
Zm00001eb183830 Zea mays HOM05D004285 ORTHO05D005176 3.6e-15 86.3 149 35.6
Thhalv10014638m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 6.2e-15 85.5 149 35.6
Sp6g34050 Schrenkiella parvula HOM05D004285 ORTHO05D005176 6.2e-15 85.5 149 35.6
BraA06t25999Z Brassica rapa HOM05D004285 ORTHO05D005176 8.1e-15 85.1 171 34.5
FAN10G2762 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.1e-14 84.7 149 35.6
Aa31LG3G17740 Aethionema arabicum HOM05D004285 ORTHO05D005176 1.4e-14 84.3 149 34.9
Carub.0006s0781 Capsella rubella HOM05D004285 ORTHO05D005176 1.4e-14 84.3 149 34.9
PRCOL_00005830 Prasinoderma coloniale HOM05D004285 ORTHO05D005176 1.4e-14 84.3 173 37.0
Solyc12g096650.2 Solanum lycopersicum HOM05D004285 ORTHO05D005176 2.4e-14 83.6 149 35.6
Eucgr.H05139 Eucalyptus grandis HOM05D004285 ORTHO05D005176 3.1e-14 83.2 149 37.6
CAN.G566.38 Capsicum annuum HOM05D004285 ORTHO05D005176 4.0e-14 82.8 149 34.9
Rhsim08G0027500 Rhododendron simsii HOM05D004285 ORTHO05D005176 4.0e-14 82.8 149 34.9
Nn5g28435 Nelumbo nucifera HOM05D004285 ORTHO05D005176 6.9e-14 82.0 149 34.2
Pp3c2_32100 Physcomitrium patens HOM05D004285 ORTHO05D005176 6.9e-14 82.0 149 37.6
BcaB08g37222 Brassica carinata HOM05D004285 ORTHO05D005176 9.0e-14 81.6 149 34.9
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 9.0e-14 81.6 149 34.9
Cre13.g589700 Chlamydomonas reinhardtii HOM05D004285 ORTHO05D005176 1.2e-13 81.3 170 35.3
Lsat_1_v5_gn_4_38601 Lactuca sativa HOM05D004285 ORTHO05D005176 1.2e-13 81.3 149 35.6
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 1.5e-13 80.9 149 34.2
CiPaw.04G079800 Carya illinoinensis HOM05D004285 ORTHO05D005176 1.5e-13 80.9 149 33.6
Haze_25379 Corylus avellana HOM05D004285 ORTHO05D005176 1.5e-13 80.9 128 38.3
Medtr3g096680 Medicago truncatula HOM05D004285 ORTHO05D005176 3.4e-13 79.7 172 32.6
Nitab4.5_0008205g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 3.4e-13 79.7 149 36.2
AagrBONN_evm.TU.Sc2ySwM_117.2591 Anthoceros agrestis HOM05D004285 ORTHO05D005176 4.4e-13 79.3 153 34.6
FvH4_7g03820 Fragaria vesca HOM05D004285 ORTHO05D005176 2.9e-12 76.6 149 32.9
FAN06G1556 Fragaria x ananassa HOM05D004285 ORTHO05D005176 2.9e-12 76.6 149 32.9
Os02g0596500 Oryza sativa ssp. japonica HOM05D004285 ORTHO05D005176 2.9e-12 76.6 149 34.2
vmacro18460 Vaccinium macrocarpon HOM05D004285 ORTHO05D005176 6.4e-12 75.5 128 35.9
Lj2A489T51 Lonicera japonica HOM05D004285 ORTHO05D005176 1.1e-11 74.7 128 34.4
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 9.3e-11 71.6 128 34.4
BraA10t44845Z Brassica rapa HOM05D004285 ORTHO05D005176 9.3e-11 71.6 128 34.4
CAN.G607.7 Capsicum annuum HOM05D004285 ORTHO05D005176 1.2e-10 71.2 174 31.6
Nitab4.5_0000013g0100 Nicotiana tabacum HOM05D004285 ORTHO05D005176 1.2e-10 71.2 128 35.2
Peaxi162Scf01205g00036 Petunia axillaris HOM05D004285 ORTHO05D005176 3.5e-10 69.7 124 34.7
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 4.6e-10 69.3 118 36.4
Haze_26675 Corylus avellana HOM05D004285 ORTHO05D005176 4.6e-10 69.3 146 32.2
Oeu022909.3 Olea europaea HOM05D004285 ORTHO05D005176 6.0e-10 68.9 125 34.4
C09p68060 Brassica napus HOM05D004285 ORTHO05D005176 7.8e-10 68.6 119 35.3
C09p68120 Brassica napus HOM05D004285 ORTHO05D005176 7.8e-10 68.6 119 35.3
CARHR204160 Cardamine hirsuta HOM05D004285 ORTHO05D005176 7.8e-10 68.6 124 34.7
ClCG04G001580 Citrullus lanatus HOM05D004285 ORTHO05D005176 3.9e-09 66.2 128 34.4
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 6.6e-09 65.5 166 31.9
AL697U10010 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 7.3e-08 62.0 76 44.7
Cfa026504 Carpinus fangiana HOM05D004285 ORTHO05D005176 7.3e-08 62.0 172 30.8
FAN03G0757 Fragaria x ananassa HOM05D004285 ORTHO05D005176 2.8e-07 60.1 89 34.8
FAN12G2135 Fragaria x ananassa HOM05D004285 ORTHO05D005176 4.8e-07 59.3 105 33.3
Migut.G00927 Erythranthe guttata HOM05D004285 ORTHO05D005176 8.1e-07 58.5 76 42.1


User provided reference genes

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