Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G438 Micromonas commoda HOM05D005151 ORTHO05D006322 2.6e-114 416.0 205 100.0
MSTRG.10530 Avicennia marina HOM05D005151 ORTHO05D006322 2.8e-44 183.3 210 49.5
BolC1t00925H Brassica oleracea HOM05D005151 ORTHO05D006322 6.2e-44 182.2 210 50.5
Gorai.010G085400 Gossypium raimondii HOM05D005151 ORTHO05D006322 1.4e-43 181.0 210 50.0
Thecc.09G082600 Theobroma cacao HOM05D005151 ORTHO05D006322 1.4e-43 181.0 210 50.0
Atru.chr12.2297 Acer truncatum HOM05D005151 ORTHO05D006322 1.8e-43 180.6 210 49.5
C01p09370 Brassica napus HOM05D005151 ORTHO05D006322 1.8e-43 180.6 210 50.0
BraA01t00781Z Brassica rapa HOM05D005151 ORTHO05D006322 1.8e-43 180.6 210 50.0
Thhalv10027356m.g Eutrema salsugineum HOM05D005151 ORTHO05D006322 1.8e-43 180.6 210 50.0
Sp7g27640 Schrenkiella parvula HOM05D005151 ORTHO05D006322 1.8e-43 180.6 210 50.0
CiPaw.03G210900 Carya illinoinensis HOM05D005151 ORTHO05D006322 3.1e-43 179.9 210 49.5
Gohir.A07G013500 Gossypium hirsutum HOM05D005151 ORTHO05D006322 3.1e-43 179.9 210 49.0
Duzib168G1011 Durio zibethinus HOM05D005151 ORTHO05D006322 4.0e-43 179.5 210 49.5
AL7G22420 Arabidopsis lyrata HOM05D005151 ORTHO05D006322 5.3e-43 179.1 210 49.5
A08p19540 Brassica napus HOM05D005151 ORTHO05D006322 5.3e-43 179.1 210 50.0
C03p89080 Brassica napus HOM05D005151 ORTHO05D006322 5.3e-43 179.1 210 50.0
BolC3t21221H Brassica oleracea HOM05D005151 ORTHO05D006322 5.3e-43 179.1 210 50.0
Duzib150G1015 Durio zibethinus HOM05D005151 ORTHO05D006322 5.3e-43 179.1 210 49.0
Gohir.D06G073100 Gossypium hirsutum HOM05D005151 ORTHO05D006322 5.3e-43 179.1 210 49.0
BcaC01g01191 Brassica carinata HOM05D005151 ORTHO05D006322 6.9e-43 178.7 210 49.5
AUR62041890 Chenopodium quinoa HOM05D005151 ORTHO05D006322 6.9e-43 178.7 210 46.7
Aa31LG2G20710 Aethionema arabicum HOM05D005151 ORTHO05D006322 9.0e-43 178.3 210 49.0
AT4G29830 Arabidopsis thaliana HOM05D005151 ORTHO05D006322 9.0e-43 178.3 210 49.5
CARHR237730 Cardamine hirsuta HOM05D005151 ORTHO05D006322 9.0e-43 178.3 210 49.5
Gohir.A06G074300 Gossypium hirsutum HOM05D005151 ORTHO05D006322 9.0e-43 178.3 210 49.5
TWI63G0393 Tripterygium wilfordii HOM05D005151 ORTHO05D006322 1.2e-42 177.9 210 48.6
Gorai.001G014000 Gossypium raimondii HOM05D005151 ORTHO05D006322 2.0e-42 177.2 210 48.6
CANSAT56G1855 Cannabis sativa HOM05D005151 ORTHO05D006322 2.6e-42 176.8 210 49.0
Gohir.D07G013300 Gossypium hirsutum HOM05D005151 ORTHO05D006322 2.6e-42 176.8 210 48.6
BcaB03g12621 Brassica carinata HOM05D005151 ORTHO05D006322 3.4e-42 176.4 210 49.5
COL.COLO4_18151 Corchorus olitorius HOM05D005151 ORTHO05D006322 3.4e-42 176.4 210 48.6
THA.LOC104820014 Tarenaya hassleriana HOM05D005151 ORTHO05D006322 3.4e-42 176.4 210 48.6
Manes.16G098700 Manihot esculenta HOM05D005151 ORTHO05D006322 4.5e-42 176.0 210 48.6
PSO210G7456 Papaver somniferum HOM05D005151 ORTHO05D006322 4.5e-42 176.0 210 49.5
GSVIVG01015149001 Vitis vinifera HOM05D005151 ORTHO05D006322 4.5e-42 176.0 210 49.0
QL02p061718 Quercus lobata HOM05D005151 ORTHO05D006322 7.6e-42 175.3 210 48.1
AUR62038818 Chenopodium quinoa HOM05D005151 ORTHO05D006322 1.0e-41 174.9 210 46.2
Ciclev10010808m.g Citrus clementina HOM05D005151 ORTHO05D006322 1.0e-41 174.9 210 47.6
MELO3C015499.2 Cucumis melo HOM05D005151 ORTHO05D006322 1.0e-41 174.9 210 47.6
Glyma.13G107300 Glycine max HOM05D005151 ORTHO05D006322 1.0e-41 174.9 210 49.0
Nn6g35560 Nelumbo nucifera HOM05D005151 ORTHO05D006322 1.0e-41 174.9 210 49.5
Carub.0004s1480 Capsella rubella HOM05D005151 ORTHO05D006322 1.3e-41 174.5 210 48.6
CDE05G0358 Ceratophyllum demersum HOM05D005151 ORTHO05D006322 1.7e-41 174.1 210 49.0
Migut.L01534 Erythranthe guttata HOM05D005151 ORTHO05D006322 1.7e-41 174.1 210 47.6
TAR624G0089 Trochodendron aralioides HOM05D005151 ORTHO05D006322 1.7e-41 174.1 210 49.0
ClCG03G015320 Citrullus lanatus HOM05D005151 ORTHO05D006322 2.9e-41 173.3 210 47.1
Glyma.17G052100 Glycine max HOM05D005151 ORTHO05D006322 2.9e-41 173.3 210 49.0
CsaV3_1G040710 Cucumis sativus L. HOM05D005151 ORTHO05D006322 3.8e-41 172.9 210 47.1
Eucgr.C03405 Eucalyptus grandis HOM05D005151 ORTHO05D006322 3.8e-41 172.9 210 48.1
MBI15_g27849_MAGBIO Magnolia biondii HOM05D005151 ORTHO05D006322 4.9e-41 172.6 210 48.1
PSO210G4100 Papaver somniferum HOM05D005151 ORTHO05D006322 4.9e-41 172.6 210 49.0
CSS0008874 Camellia sinensis var. sinensis HOM05D005151 ORTHO05D006322 6.5e-41 172.2 210 47.1
Pp3c2_28090 Physcomitrium patens HOM05D005151 ORTHO05D006322 6.5e-41 172.2 213 48.4
Pp3c2_28110 Physcomitrium patens HOM05D005151 ORTHO05D006322 6.5e-41 172.2 213 48.4
Sed0024958 Sechium edule HOM05D005151 ORTHO05D006322 6.5e-41 172.2 210 47.1
Sc09g0008330 Simmondsia chinensis HOM05D005151 ORTHO05D006322 6.5e-41 172.2 210 44.8
Aqoxy7G03996 Aquilegia oxysepala HOM05D005151 ORTHO05D006322 8.4e-41 171.8 210 48.6
Sabra06G0115300 Salix brachista HOM05D005151 ORTHO05D006322 1.1e-40 171.4 214 46.7
AagrBONN_evm.TU.Sc2ySwM_344.2105 Anthoceros agrestis HOM05D005151 ORTHO05D006322 1.4e-40 171.0 213 49.3
AagrBONN_evm.TU.Sc2ySwM_344.5188 Anthoceros agrestis HOM05D005151 ORTHO05D006322 1.4e-40 171.0 214 49.1
Cfa003042 Carpinus fangiana HOM05D005151 ORTHO05D006322 1.4e-40 171.0 210 47.6
Lalb_Chr07g0181001 Lupinus albus HOM05D005151 ORTHO05D006322 1.4e-40 171.0 210 48.1
Oeu054828.1 Olea europaea HOM05D005151 ORTHO05D006322 1.4e-40 171.0 210 47.6
Sed0005858 Sechium edule HOM05D005151 ORTHO05D006322 1.9e-40 170.6 210 46.7
vmacro06306 Vaccinium macrocarpon HOM05D005151 ORTHO05D006322 1.9e-40 170.6 210 48.1
EL10Ac2g02619 Beta vulgaris HOM05D005151 ORTHO05D006322 2.5e-40 170.2 211 44.1
arahy.Tifrunner.gnm1.ann1.20C8M4 Arachis hypogaea HOM05D005151 ORTHO05D006322 5.5e-40 169.1 210 46.7
arahy.Tifrunner.gnm1.ann1.7L7952 Arachis hypogaea HOM05D005151 ORTHO05D006322 5.5e-40 169.1 210 46.7
CBR_g54314 Chara braunii HOM05D005151 ORTHO05D006322 5.5e-40 169.1 221 42.1
MD15G1212600 Malus domestica HOM05D005151 ORTHO05D006322 5.5e-40 169.1 210 47.6
Rhsim03G0230900 Rhododendron simsii HOM05D005151 ORTHO05D006322 5.5e-40 169.1 210 47.6
SMO244G0035 Selaginella moellendorffii HOM05D005151 ORTHO05D006322 5.5e-40 169.1 209 46.4
Lj4g0018142 Lotus japonicus HOM05D005151 ORTHO05D006322 7.1e-40 168.7 211 47.9
Phvul.003G133800 Phaseolus vulgaris HOM05D005151 ORTHO05D006322 9.3e-40 168.3 210 48.1
Ah.12g064130 Amaranthus hybridus HOM05D005151 ORTHO05D006322 1.2e-39 167.9 211 44.5
Sopen07g020370 Solanum pennellii HOM05D005151 ORTHO05D006322 1.6e-39 167.5 220 45.5
CSS0027881 Camellia sinensis var. sinensis HOM05D005151 ORTHO05D006322 2.1e-39 167.2 210 47.6
Lj4A288G22 Lonicera japonica HOM05D005151 ORTHO05D006322 2.1e-39 167.2 200 46.5
MD02G1085500 Malus domestica HOM05D005151 ORTHO05D006322 2.1e-39 167.2 210 46.7
Mapoly0001s0052 Marchantia polymorpha HOM05D005151 ORTHO05D006322 2.1e-39 167.2 216 46.3
unitig_699.g19288 Utricularia gibba HOM05D005151 ORTHO05D006322 2.1e-39 167.2 210 46.2
VMungo1215G2073 Vigna mungo HOM05D005151 ORTHO05D006322 2.1e-39 167.2 210 47.6
HanXRQChr03g0063021 Helianthus annuus HOM05D005151 ORTHO05D006322 2.7e-39 166.8 210 46.7
Potri.006G145800 Populus trichocarpa HOM05D005151 ORTHO05D006322 2.7e-39 166.8 210 46.2
FvH4_1g30420 Fragaria vesca HOM05D005151 ORTHO05D006322 3.5e-39 166.4 210 46.2
FAN23G2025 Fragaria x ananassa HOM05D005151 ORTHO05D006322 3.5e-39 166.4 210 46.2
FAN26G3474 Fragaria x ananassa HOM05D005151 ORTHO05D006322 3.5e-39 166.4 210 46.2
FAN28G0640 Fragaria x ananassa HOM05D005151 ORTHO05D006322 3.5e-39 166.4 210 46.2
PGSC0003DMG400000330 Solanum tuberosum HOM05D005151 ORTHO05D006322 4.6e-39 166.0 210 45.2
Medtr4g125710 Medicago truncatula HOM05D005151 ORTHO05D006322 6.0e-39 165.6 210 47.1
MBI16_g18211_MAGBIO Magnolia biondii HOM05D005151 ORTHO05D006322 7.9e-39 165.2 210 46.7
Peaxi162Scf00498g00525 Petunia axillaris HOM05D005151 ORTHO05D006322 7.9e-39 165.2 211 46.0
Prupe.6G180900 Prunus persica HOM05D005151 ORTHO05D006322 7.9e-39 165.2 210 46.2
Dinv36800 Davidia involucrata HOM05D005151 ORTHO05D006322 1.0e-38 164.9 215 46.5
PGR142G4460 Punica granatum HOM05D005151 ORTHO05D006322 1.0e-38 164.9 210 45.7
TPR.G9439 Trifolium pratense HOM05D005151 ORTHO05D006322 1.0e-38 164.9 210 46.7
RcHm_v2.0_Chr3g0490661 Rosa chinensis HOM05D005151 ORTHO05D006322 1.3e-38 164.5 210 45.7
PGSC0003DMG400016078 Solanum tuberosum HOM05D005151 ORTHO05D006322 1.3e-38 164.5 220 45.0
Ca_21304_v3 Cicer arietinum L. HOM05D005151 ORTHO05D006322 2.3e-38 163.7 210 46.7
FAN19G1484 Fragaria x ananassa HOM05D005151 ORTHO05D006322 2.3e-38 163.7 210 45.7
Sopen12g003960 Solanum pennellii HOM05D005151 ORTHO05D006322 2.3e-38 163.7 210 44.3
Solyc07g041080.3 Solanum lycopersicum HOM05D005151 ORTHO05D006322 3.0e-38 163.3 220 45.0
COL.COLO4_27437 Corchorus olitorius HOM05D005151 ORTHO05D006322 5.1e-38 162.5 208 47.1
Psat4g016320 Pisum sativum HOM05D005151 ORTHO05D006322 5.1e-38 162.5 210 46.2
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 1.1e-37 161.4 210 43.8
Nitab4.5_0002642g0040 Nicotiana tabacum HOM05D005151 ORTHO05D006322 1.9e-37 160.6 214 43.9
SalBow1G7018 Salvia bowleyana HOM05D005151 ORTHO05D006322 2.5e-37 160.2 210 45.2
Nitab4.5_0000073g0020 Nicotiana tabacum HOM05D005151 ORTHO05D006322 3.3e-37 159.8 214 43.5
ECA240G1097 Erigeron canadensis HOM05D005151 ORTHO05D006322 4.3e-37 159.5 210 44.8
DCAR_024719 Daucus carota HOM05D005151 ORTHO05D006322 5.7e-37 159.1 210 45.2
Lsat_1_v5_gn_7_34720 Lactuca sativa HOM05D005151 ORTHO05D006322 5.7e-37 159.1 212 43.4
Nitab4.5_0002842g0020 Nicotiana tabacum HOM05D005151 ORTHO05D006322 5.7e-37 159.1 220 43.6
Nitab4.5_0002079g0070 Nicotiana tabacum HOM05D005151 ORTHO05D006322 1.3e-36 157.9 220 43.2
FAN28G1692 Fragaria x ananassa HOM05D005151 ORTHO05D006322 2.8e-36 156.8 205 44.9
SGA_v2.0_scaffold23G10051 Striga asiatica HOM05D005151 ORTHO05D006322 1.8e-35 154.1 211 45.0
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 1.2e-34 151.4 211 43.6
Hma1.2p1_0672F.1_g200870 Hydrangea macrophylla HOM05D005151 ORTHO05D006322 1.5e-34 151.0 210 43.8
Oeu051308.2 Olea europaea HOM05D005151 ORTHO05D006322 2.6e-34 150.2 249 40.6
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 4.5e-34 149.4 211 42.7
Actinidia29915 Actinidia chinensis HOM05D005151 ORTHO05D006322 4.2e-32 142.9 225 40.9
HPP92_018271 Vanilla planifolia HOM05D000049 ORTHO05D000027 8.7e-30 135.2 207 43.0
SHI30700 Sapria himalayana HOM05D005151 ORTHO05D006322 1.5e-29 134.4 210 39.5
Nn8g38754 Nelumbo nucifera HOM05D005151 ORTHO05D006322 2.4e-27 127.1 229 39.7
Cre11.g468377 Chlamydomonas reinhardtii HOM05D005151 ORTHO05D006322 6.9e-27 125.6 195 42.1
Haze_25954 Corylus avellana HOM05D005151 ORTHO05D006322 7.4e-21 105.5 114 49.1
Cpa.g.sc28.112 Carica papaya HOM05D005151 ORTHO05D006322 1.1e-19 101.7 114 47.4
SEGI_01394 Sequoiadendron giganteum HOM05D005151 ORTHO05D006322 1.8e-19 100.9 114 48.2
BcaC01g01189 Brassica carinata HOM05D005151 ORTHO05D006322 2.4e-19 100.5 114 50.0
Oeu051307.1 Olea europaea HOM05D005151 ORTHO05D006322 2.4e-19 100.5 114 48.2
Actinidia38461 Actinidia chinensis HOM05D005151 ORTHO05D006322 1.5e-18 97.8 114 46.5
TAR149G0001 Trochodendron aralioides HOM05D005151 ORTHO05D006322 7.7e-18 95.5 106 49.1
Cc06_g11820 Coffea canephora HOM05D005151 ORTHO05D006322 3.2e-16 90.1 114 43.0
Cfa018999 Carpinus fangiana HOM05D005151 ORTHO05D006322 2.3e-14 84.0 110 43.6
BcaC09g51761 Brassica carinata HOM05D005151 ORTHO05D006322 6.7e-14 82.4 90 52.2
A01p08330 Brassica napus HOM05D005151 ORTHO05D006322 1.1e-13 81.6 95 49.5
ATR0693G369 Amborella trichopoda HOM05D005151 ORTHO05D006322 8.2e-12 75.5 93 44.1
Haze_27115 Corylus avellana HOM05D005151 ORTHO05D006322 4.1e-11 73.2 107 37.4
SEGI_09202 Sequoiadendron giganteum HOM05D005151 ORTHO05D006322 7.0e-11 72.4 110 42.7
SEGI_15722 Sequoiadendron giganteum HOM05D005151 ORTHO05D006322 9.1e-11 72.0 131 38.2
VMungo0464G1091 Vigna mungo HOM05D002288 ORTHO05D002894 1.2e-07 61.6 167 28.1
Cfa018237 Carpinus fangiana HOM05D005151 ORTHO05D006322 6.1e-07 59.3 77 44.2
Ah.06g188360 Amaranthus hybridus HOM05D005151 ORTHO05D006322 8.0e-07 58.9 61 50.8
Ah.11g044930 Amaranthus hybridus HOM05D003769 ORTHO05D004521 2.3e-06 57.4 189 24.3
TAR587G0001 Trochodendron aralioides HOM05D005151 ORTHO05D006322 3.0e-06 57.0 62 50.0
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 6.7e-06 55.8 201 26.9
PSO675G6139 Papaver somniferum HOM05D004669 ORTHO05D005767 8.8e-06 55.5 203 25.1


User provided reference genes

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