Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 8.5e-65 250.0 110 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 2.3e-38 162.2 112 61.6
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 1.3e-36 156.4 111 58.6
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 2.4e-35 152.1 110 60.0
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 5.4e-35 151.0 111 59.5
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 5.6e-32 141.0 93 65.6
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 1.7e-28 129.4 109 50.5
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 1.2e-26 123.2 82 62.2
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 3.5e-26 121.7 109 45.9
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 5.1e-25 117.9 69 75.4
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 3.6e-23 111.7 109 43.1
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 6.2e-23 110.9 109 46.8
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 6.2e-23 110.9 109 44.0
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 8.1e-23 110.5 109 47.7
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 8.1e-23 110.5 109 44.0
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 1.4e-22 109.8 111 43.2
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 1.4e-22 109.8 111 44.1
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 1.4e-22 109.8 111 44.1
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 1.4e-22 109.8 111 44.1
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 1.4e-22 109.8 109 44.0
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 3.1e-22 108.6 111 45.9
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 3.1e-22 108.6 111 44.1
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 7.6e-21 104.0 109 40.4
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 7.6e-21 104.0 109 40.4
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 9.9e-21 103.6 109 40.4
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 9.9e-21 103.6 109 40.4
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 1.7e-20 102.8 109 44.0
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 2.2e-20 102.4 112 42.9
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 2.9e-20 102.1 109 40.4
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.9e-20 102.1 109 41.3
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 3.8e-20 101.7 107 42.1
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 4.9e-20 101.3 109 39.4
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 4.9e-20 101.3 111 41.4
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 6.4e-20 100.9 109 40.4
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 8.4e-20 100.5 111 41.4
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 1.1e-19 100.1 111 43.2
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 1.1e-19 100.1 111 43.2
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 1.1e-19 100.1 111 44.1
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 1.4e-19 99.8 111 41.4
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 1.4e-19 99.8 111 41.4
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 1.4e-19 99.8 110 39.1
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 2.4e-19 99.0 111 42.3
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 2.4e-19 99.0 111 42.3
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 4.1e-19 98.2 113 40.7
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 5.4e-19 97.8 112 41.1
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 5.4e-19 97.8 111 42.3
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 7.1e-19 97.4 111 43.2
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 9.2e-19 97.1 111 40.5
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.2e-18 96.7 109 41.3
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 1.2e-18 96.7 111 41.4
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.2e-18 96.7 111 41.4
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.6e-18 96.3 109 41.3
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 2.1e-18 95.9 110 41.8
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 2.1e-18 95.9 110 41.8
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 2.1e-18 95.9 113 41.6
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 2.1e-18 95.9 111 41.4
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 2.1e-18 95.9 111 40.5
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 2.7e-18 95.5 110 41.8
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 2.7e-18 95.5 109 42.2
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 3.5e-18 95.1 109 42.2
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 3.5e-18 95.1 109 42.2
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 3.5e-18 95.1 109 42.2
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 3.5e-18 95.1 109 42.2
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 3.5e-18 95.1 109 42.2
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 4.6e-18 94.7 109 42.2
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 4.6e-18 94.7 109 42.2
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 6.0e-18 94.4 112 42.9
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 1.0e-17 93.6 109 39.4
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 1.0e-17 93.6 109 40.4
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 1.0e-17 93.6 109 40.4
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 1.0e-17 93.6 113 40.7
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 1.3e-17 93.2 112 39.3
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 1.7e-17 92.8 111 39.6
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 1.7e-17 92.8 111 38.7
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 3.0e-17 92.0 111 38.7
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 3.0e-17 92.0 111 39.6
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.9e-17 91.7 111 39.6
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.9e-17 91.7 111 39.6
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.9e-17 91.7 111 39.6
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.9e-17 91.7 111 39.6
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 5.1e-17 91.3 109 36.7
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 1.1e-16 90.1 109 36.7
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 1.1e-16 90.1 109 39.4
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 1.1e-16 90.1 113 41.6
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 1.9e-16 89.4 111 37.8
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 1.9e-16 89.4 118 38.1
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 1.9e-16 89.4 113 42.5
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 2.5e-16 89.0 111 37.8
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 1.2e-15 86.7 111 38.7
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.6e-15 86.3 112 38.4
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 3.6e-15 85.1 111 38.7
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 4.7e-15 84.7 111 36.9
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 6.2e-15 84.3 89 44.9
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 6.2e-15 84.3 111 36.0
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 8.1e-15 84.0 114 37.7
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 1.1e-14 83.6 111 36.0
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 1.8e-14 82.8 110 37.3
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 1.8e-14 82.8 113 37.2
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 1.8e-14 82.8 113 37.2
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 5.2e-14 81.3 98 38.8
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 5.2e-14 81.3 116 34.5
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 5.2e-14 81.3 111 34.2
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 9.0e-14 80.5 113 35.4
AagrBONN_evm.TU.Sc2ySwM_344.301 Anthoceros agrestis HOM05D006029 ORTHO05D007439 7.6e-13 77.4 67 47.8
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 7.6e-13 77.4 102 37.3
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 2.2e-12 75.9 111 32.4
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 2.2e-12 75.9 109 33.0
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 2.9e-12 75.5 65 55.4
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 8.4e-12 73.9 88 40.9
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 9.3e-11 70.5 70 48.6
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 1.1e-08 63.5 63 42.9
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 1.9e-08 62.8 113 32.7
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.3e-08 62.0 114 28.1
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 9.6e-08 60.5 110 33.6
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.1e-07 59.3 112 33.0
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.1e-07 59.3 119 30.3
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 2.8e-07 58.9 112 33.0
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 4.8e-07 58.2 115 29.6
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 4.8e-07 58.2 138 27.5
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 8.1e-07 57.4 112 30.4
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 8.1e-07 57.4 82 32.9
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 1.1e-06 57.0 112 30.4
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 1.1e-06 57.0 112 31.2
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 1.1e-06 57.0 119 29.4
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 1.4e-06 56.6 112 30.4
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.4e-06 56.6 117 29.9
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 2.4e-06 55.8 112 31.2
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 2.4e-06 55.8 112 27.7
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 2.4e-06 55.8 120 32.5
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 2.4e-06 55.8 119 29.4
HanXRQChr07g0205051 Helianthus annuus HOM05D002276 ORTHO05D002381 3.1e-06 55.5 77 36.4
HanXRQChr08g0216851 Helianthus annuus HOM05D002276 ORTHO05D002381 3.1e-06 55.5 77 36.4
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 4.0e-06 55.1 65 35.4
HanXRQChr14g0460591 Helianthus annuus HOM05D002276 ORTHO05D002381 4.0e-06 55.1 77 36.4
Lsat_1_v5_gn_9_60240 Lactuca sativa HOM05D002276 ORTHO05D002381 4.0e-06 55.1 77 36.4
Lj8C53T13 Lonicera japonica HOM05D002276 ORTHO05D002381 5.3e-06 54.7 77 36.4
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 5.3e-06 54.7 112 32.1
Haze_09331 Corylus avellana HOM05D002276 ORTHO05D002381 9.0e-06 53.9 77 32.5
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 9.0e-06 53.9 112 31.2
Hund22971 Selenicereus undatus HOM05D002276 ORTHO05D002381 9.0e-06 53.9 81 33.3


User provided reference genes

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