Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 0.0e+00 1362.1 725 100.0
PRCOL_00003584 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 2.5e-136 490.3 460 55.7
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 2.1e-37 161.8 294 36.4
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 2.9e-23 114.8 332 31.6
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 3.8e-23 114.4 318 29.6
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 4.9e-23 114.0 338 29.0
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 8.4e-23 113.2 338 29.0
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 1.1e-22 112.8 334 28.4
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 2.5e-22 111.7 337 32.3
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 9.3e-22 109.8 344 28.8
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 3.9e-20 104.4 352 29.5
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 8.7e-20 103.2 353 28.6
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 1.5e-19 102.4 283 30.7
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 1.5e-19 102.4 336 28.3
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 1.5e-19 102.4 353 28.0
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 1.9e-19 102.1 376 26.6
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 3.3e-19 101.3 345 27.2
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 5.7e-19 100.5 346 27.5
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 1.3e-18 99.4 352 26.7
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 1.3e-18 99.4 355 28.2
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 1.6e-18 99.0 348 26.1
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 1.6e-18 99.0 341 26.7
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 3.7e-18 97.8 352 27.0
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 4.8e-18 97.4 350 27.1
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 4.8e-18 97.4 355 27.0
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 8.2e-18 96.7 352 26.7
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 8.2e-18 96.7 337 28.8
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 1.1e-17 96.3 346 27.7
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 1.8e-17 95.5 346 27.5
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 2.4e-17 95.1 337 26.7
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 3.1e-17 94.7 341 25.2
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 3.1e-17 94.7 340 27.1
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 3.1e-17 94.7 346 26.3
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 3.1e-17 94.7 337 26.7
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 3.1e-17 94.7 353 27.5
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 3.1e-17 94.7 345 27.8
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 4.1e-17 94.4 345 24.9
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 4.1e-17 94.4 360 27.5
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 5.3e-17 94.0 347 25.9
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 5.3e-17 94.0 345 25.2
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 6.9e-17 93.6 349 25.5
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 6.9e-17 93.6 341 25.8
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 9.0e-17 93.2 342 27.5
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 1.2e-16 92.8 348 26.7
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 1.2e-16 92.8 349 27.5
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 1.5e-16 92.4 345 26.7
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 1.5e-16 92.4 268 31.0
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 2.0e-16 92.0 349 25.8
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 2.6e-16 91.7 342 27.2
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 3.4e-16 91.3 266 28.6
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 4.5e-16 90.9 351 26.2
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 5.9e-16 90.5 343 25.1
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 5.9e-16 90.5 338 27.5
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 7.7e-16 90.1 350 27.1
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 1.7e-15 89.0 355 26.8
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 1.7e-15 89.0 397 25.2
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 2.2e-15 88.6 379 25.6
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.9e-15 88.2 257 27.6
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 2.9e-15 88.2 337 25.8
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 6.5e-15 87.0 322 28.3
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 6.5e-15 87.0 347 26.5
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 6.5e-15 87.0 346 27.7
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 8.5e-15 86.7 367 26.2
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 8.5e-15 86.7 338 27.2
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 8.5e-15 86.7 361 26.3
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 8.5e-15 86.7 355 25.6
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 1.1e-14 86.3 339 27.4
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 1.1e-14 86.3 355 25.6
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 1.1e-14 86.3 351 28.2
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 1.9e-14 85.5 357 26.3
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 1.9e-14 85.5 360 26.1
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 1.9e-14 85.5 352 26.7
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 2.5e-14 85.1 366 27.3
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 7.2e-14 83.6 356 26.1
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 7.2e-14 83.6 338 26.9
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 7.2e-14 83.6 352 26.4
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 7.2e-14 83.6 260 30.0
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 9.4e-14 83.2 338 27.5
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 1.2e-13 82.8 350 26.0
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.6e-13 82.4 264 27.7
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 2.1e-13 82.0 350 26.6
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 2.7e-13 81.6 267 26.2
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 2.7e-13 81.6 270 26.7
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 3.6e-13 81.3 277 26.4
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 4.6e-13 80.9 353 25.8
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 4.6e-13 80.9 343 24.8
PRCOL_00005916 Prasinoderma coloniale HOM05D006053 ORTHO05D008381 4.6e-13 80.9 107 42.1
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 6.1e-13 80.5 376 26.3
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 6.1e-13 80.5 330 25.2
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 6.1e-13 80.5 345 25.8
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 1.4e-12 79.3 338 26.6
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 1.8e-12 79.0 358 25.1
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 2.3e-12 78.6 351 26.2
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 5.1e-12 77.4 246 26.8
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 6.7e-12 77.0 242 30.6
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 3.3e-11 74.7 208 32.7
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 3.3e-11 74.7 333 25.5
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 4.3e-11 74.3 261 26.4
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 1.3e-10 72.8 241 26.1
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 2.2e-10 72.0 166 32.5
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 3.7e-10 71.2 243 28.8
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 8.2e-10 70.1 172 29.1
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 1.8e-09 68.9 160 30.6
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 3.1e-09 68.2 160 30.6
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 1.2e-08 66.2 166 30.1
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 2.6e-08 65.1 304 25.7
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 3.8e-07 61.2 345 24.3
CAN.G572.37 Capsicum annuum HOM05D005384 ORTHO05D006477 6.5e-07 60.5 186 33.3
CSS0025762 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D000124 1.1e-06 59.7 92 39.1
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 1.1e-06 59.7 169 31.4
CsaV3_5G020310 Cucumis sativus L. HOM05D005384 ORTHO05D006477 1.1e-06 59.7 169 31.4
CsaV3_1G005980 Cucumis sativus L. HOM05D000142 ORTHO05D000124 1.9e-06 58.9 97 38.1
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 2.5e-06 58.5 180 31.1
Peaxi162Scf00084g00818 Petunia axillaris HOM05D005384 ORTHO05D006477 2.5e-06 58.5 188 31.4
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 2.5e-06 58.5 175 32.0
HPP92_022596 Vanilla planifolia HOM05D005384 ORTHO05D006477 2.5e-06 58.5 158 32.9
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 4.2e-06 57.8 164 31.1
Lj2A247G82 Lonicera japonica HOM05D005384 ORTHO05D006477 4.2e-06 57.8 185 28.1
Dinv28538 Davidia involucrata HOM05D001543 ORTHO05D001722 5.5e-06 57.4 79 38.0
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 5.5e-06 57.4 164 31.7
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 5.5e-06 57.4 164 31.7
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 5.5e-06 57.4 175 32.0
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 5.5e-06 57.4 164 31.7
Sopen08g025890 Solanum pennellii HOM05D005384 ORTHO05D006477 5.5e-06 57.4 164 31.7
MCO05G054 Micromonas commoda HOM05D001443 ORTHO05D008506 7.2e-06 57.0 156 30.1
Hma1.2p1_1037F.1_g250650 Hydrangea macrophylla HOM05D000142 ORTHO05D000124 9.4e-06 56.6 106 34.0


User provided reference genes

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