Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 0.0e+00 1097.8 542 100.0
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 6.1e-265 917.1 540 81.1
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 6.1e-265 917.1 540 80.9
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 1.0e-264 916.4 541 81.3
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 1.0e-264 916.4 540 80.9
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 1.4e-264 916.0 540 81.3
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 1.4e-264 916.0 540 80.6
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.8e-264 915.6 540 81.1
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.8e-264 915.6 540 81.1
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.8e-264 915.6 540 81.1
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 2.3e-264 915.2 540 80.9
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 3.0e-264 914.8 541 81.0
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 3.0e-264 914.8 540 80.7
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 4.0e-264 914.4 540 81.1
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 5.2e-264 914.1 540 80.9
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 5.2e-264 914.1 539 80.9
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 6.8e-264 913.7 540 80.6
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 6.8e-264 913.7 540 80.9
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 8.8e-264 913.3 540 80.7
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 8.8e-264 913.3 540 80.9
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 1.2e-263 912.9 540 80.9
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 1.2e-263 912.9 540 80.6
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 1.2e-263 912.9 540 80.7
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.2e-263 912.9 541 80.6
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 1.5e-263 912.5 540 80.7
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 2.0e-263 912.1 540 80.6
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 2.6e-263 911.8 540 80.6
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 3.4e-263 911.4 540 80.4
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 3.4e-263 911.4 540 80.6
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 4.4e-263 911.0 540 80.7
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 4.4e-263 911.0 540 80.6
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 5.7e-263 910.6 540 80.0
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 5.7e-263 910.6 540 80.6
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 7.5e-263 910.2 540 79.8
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 9.8e-263 909.8 540 79.8
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 9.8e-263 909.8 540 80.2
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 9.8e-263 909.8 542 80.1
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 9.8e-263 909.8 540 80.6
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 2.2e-262 908.7 540 80.0
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 2.2e-262 908.7 540 80.0
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 2.2e-262 908.7 540 80.2
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 2.2e-262 908.7 542 80.1
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 2.2e-262 908.7 540 80.4
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 2.2e-262 908.7 540 80.0
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 2.8e-262 908.3 540 80.4
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.7e-262 907.9 540 80.2
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 3.7e-262 907.9 540 79.6
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 3.7e-262 907.9 540 80.2
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 4.9e-262 907.5 540 80.0
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 4.9e-262 907.5 540 80.0
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 6.3e-262 907.1 540 79.8
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 6.3e-262 907.1 540 79.8
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 6.3e-262 907.1 540 80.0
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 6.3e-262 907.1 540 80.2
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 6.3e-262 907.1 540 80.9
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 8.3e-262 906.7 540 80.0
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 8.3e-262 906.7 540 80.6
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 8.3e-262 906.7 540 79.8
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 1.1e-261 906.4 540 79.8
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 1.1e-261 906.4 540 80.6
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 1.8e-261 905.6 540 80.4
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 1.8e-261 905.6 540 79.8
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.8e-261 905.6 540 79.6
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 1.8e-261 905.6 540 79.8
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.8e-261 905.6 540 80.0
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 1.8e-261 905.6 540 79.8
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 2.4e-261 905.2 540 79.6
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 3.1e-261 904.8 541 80.2
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 3.1e-261 904.8 540 80.0
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 3.1e-261 904.8 540 79.6
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 3.1e-261 904.8 540 79.1
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 4.1e-261 904.4 540 79.4
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 5.4e-261 904.0 538 80.7
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 5.4e-261 904.0 540 80.0
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 7.0e-261 903.7 540 79.4
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 7.0e-261 903.7 540 79.8
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 9.1e-261 903.3 540 79.4
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 9.1e-261 903.3 540 80.0
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.1e-261 903.3 540 80.2
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 9.1e-261 903.3 540 79.6
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.2e-260 902.9 540 80.2
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 3.5e-260 901.4 540 79.1
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.0e-259 899.8 540 79.4
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 1.3e-259 899.4 540 79.4
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 2.3e-259 898.7 523 81.6
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 3.8e-259 897.9 541 80.0
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 5.0e-259 897.5 540 79.3
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 2.5e-258 895.2 561 77.0
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.0e-256 889.8 572 75.5
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 4.0e-256 887.9 575 75.8
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 1.5e-255 885.9 595 73.3
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 2.0e-255 885.6 542 79.7
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 5.7e-255 884.0 540 78.9
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 1.6e-252 875.9 570 74.9
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.6e-249 865.9 553 75.9
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 3.1e-248 861.7 523 79.2
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 4.9e-246 854.4 489 82.6
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 4.7e-241 837.8 542 75.3
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.5e-231 806.2 476 80.7
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 5.8e-231 804.3 456 84.0
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 7.8e-220 767.3 540 70.9
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 3.3e-202 708.8 416 80.8
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 8.1e-201 704.1 408 81.9
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.3e-198 696.8 530 67.4
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 4.2e-197 691.8 401 81.3
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 7.1e-197 691.0 523 67.5
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.8e-195 686.4 523 67.1
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.3e-193 680.2 542 64.8
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.6e-191 672.5 489 67.9
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 7.9e-188 661.0 416 76.7
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 9.0e-184 647.5 538 61.7
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 5.5e-181 638.3 540 61.3
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.1e-178 630.6 542 61.6
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 2.5e-178 629.4 365 81.4
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 1.3e-161 573.9 331 82.2
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.7e-158 563.5 489 60.3
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 1.1e-152 544.3 315 82.9
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.3e-125 453.0 464 54.7
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 1.2e-124 451.1 489 51.5
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 4.7e-124 449.1 264 80.7
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.1e-117 427.9 534 47.0
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 9.2e-112 408.3 287 69.0
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-107 394.8 382 55.0
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-107 394.4 375 56.0
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 3.4e-106 389.8 276 69.9
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.6e-103 380.9 233 76.8
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 2.1e-100 370.5 327 60.6
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 3.1e-99 366.7 355 56.3
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.4e-96 357.1 196 84.2
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.1e-93 348.2 491 42.6
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 2.8e-92 343.6 540 40.4
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 5.8e-90 335.9 212 75.5
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-87 328.2 245 68.2
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.4e-82 310.1 216 72.2
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 7.6e-82 308.9 167 86.2
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.2e-80 303.1 179 78.8
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 9.3e-80 302.0 271 57.9
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 1.5e-74 284.6 154 83.1
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.9e-69 267.7 162 79.0
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 5.9e-66 256.1 158 77.8
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 7.7e-66 255.8 277 52.0
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 1.8e-59 234.6 298 47.0
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 7.4e-53 212.6 133 77.4
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 3.7e-52 210.3 133 75.9
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 4.8e-52 209.9 134 74.6
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 3.1e-51 207.2 126 78.6
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-46 191.8 122 78.7
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 8.5e-41 172.6 105 75.2
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 3.4e-37 160.6 113 69.0
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.7e-36 158.3 107 67.3
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 2.6e-29 134.4 259 34.7
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 3.4e-29 134.0 95 71.6
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 7.8e-26 122.9 75 78.7
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 4.9e-20 103.6 119 52.9
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 8.3e-20 102.8 73 68.5
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-19 101.3 55 87.3
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-16 92.0 58 77.6
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 2.3e-14 84.7 63 61.9
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.0e-14 84.0 52 76.9
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-12 78.6 47 78.7
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 6.4e-12 76.6 59 62.7
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.2e-11 74.3 88 52.3
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 2.3e-09 68.2 58 55.2
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 2.8e-07 61.2 49 57.1
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 6.2e-07 60.1 44 65.9


User provided reference genes

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