Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 7.0e-224 780.4 426 100.0
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 9.8e-109 397.9 369 55.0
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 9.8e-109 397.9 369 55.0
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 2.9e-108 396.4 357 55.7
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 3.7e-108 396.0 333 57.7
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 3.7e-108 396.0 348 61.2
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 3.7e-108 396.0 368 55.2
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 4.9e-108 395.6 376 54.0
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 8.3e-108 394.8 371 59.6
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 1.1e-107 394.4 345 56.5
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 1.4e-107 394.0 377 54.6
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 1.9e-107 393.7 384 53.6
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 1.9e-107 393.7 431 49.7
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 1.9e-107 393.7 371 54.2
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 5.4e-107 392.1 334 62.3
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 5.4e-107 392.1 384 53.1
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 9.2e-107 391.3 379 57.0
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 9.2e-107 391.3 347 55.9
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 9.2e-107 391.3 342 61.4
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 9.2e-107 391.3 384 53.1
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 1.2e-106 391.0 357 55.2
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 1.6e-106 390.6 370 58.4
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 1.6e-106 390.6 358 55.0
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 1.6e-106 390.6 358 55.0
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 1.6e-106 390.6 358 55.0
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 1.6e-106 390.6 371 59.3
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 1.6e-106 390.6 366 54.6
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 2.0e-106 390.2 358 55.0
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 2.0e-106 390.2 346 59.8
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 2.0e-106 390.2 382 52.1
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 2.0e-106 390.2 383 53.8
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 2.0e-106 390.2 368 54.3
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 2.7e-106 389.8 364 52.7
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 2.7e-106 389.8 397 51.4
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 2.7e-106 389.8 357 55.5
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 2.7e-106 389.8 364 60.2
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.7e-106 389.8 363 60.1
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 7.8e-106 388.3 399 55.9
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 1.0e-105 387.9 360 54.2
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 1.0e-105 387.9 345 61.2
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 1.0e-105 387.9 358 60.6
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 1.0e-105 387.9 353 55.5
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 1.3e-105 387.5 357 54.1
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 1.3e-105 387.5 365 59.2
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.3e-105 387.5 371 53.6
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 1.3e-105 387.5 369 54.5
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 1.7e-105 387.1 365 54.2
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 1.7e-105 387.1 355 59.7
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 1.7e-105 387.1 333 56.5
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 2.3e-105 386.7 357 54.6
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 2.3e-105 386.7 369 59.1
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 2.3e-105 386.7 364 53.6
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 2.3e-105 386.7 351 61.0
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 2.3e-105 386.7 377 53.6
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 3.0e-105 386.3 361 54.0
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 3.0e-105 386.3 366 57.9
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 3.0e-105 386.3 378 56.9
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 3.9e-105 386.0 346 54.9
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 3.9e-105 386.0 333 56.2
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 3.9e-105 386.0 383 53.0
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 3.9e-105 386.0 375 53.3
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 5.0e-105 385.6 350 55.1
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 6.6e-105 385.2 331 61.6
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 6.6e-105 385.2 331 61.6
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 6.6e-105 385.2 358 55.0
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 8.6e-105 384.8 333 56.5
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.1e-104 384.4 354 54.5
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 1.1e-104 384.4 398 55.8
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 1.1e-104 384.4 369 58.0
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 1.1e-104 384.4 409 51.1
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 1.5e-104 384.0 357 59.7
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 1.5e-104 384.0 386 52.3
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 1.5e-104 384.0 358 54.7
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 1.5e-104 384.0 382 52.9
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.9e-104 383.6 360 52.8
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 2.5e-104 383.3 386 51.3
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 2.5e-104 383.3 357 59.1
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 3.3e-104 382.9 399 51.4
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 5.6e-104 382.1 411 56.2
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 9.5e-104 381.3 421 55.3
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 1.6e-103 380.6 367 52.6
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 1.6e-103 380.6 369 54.2
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 2.8e-103 379.8 379 52.5
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 2.8e-103 379.8 409 50.1
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 1.8e-102 377.1 363 52.3
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.8e-102 377.1 402 50.7
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.3e-102 376.7 409 52.3
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.3e-102 376.7 389 56.3
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 3.1e-102 376.3 413 54.7
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 6.8e-102 375.2 397 50.4
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 8.9e-102 374.8 355 52.4
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 2.0e-101 373.6 343 55.1
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 9.8e-101 371.3 368 52.2
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 1.7e-100 370.5 413 54.0
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.9e-99 367.1 392 56.9
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 5.4e-99 365.5 440 48.6
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 1.3e-97 360.9 402 49.0
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 3.0e-97 359.8 339 54.3
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 1.5e-96 357.5 355 52.1
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 1.9e-96 357.1 342 58.2
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 3.3e-96 356.3 336 54.5
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 5.6e-96 355.5 328 55.2
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 3.6e-95 352.8 346 57.8
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 2.0e-93 347.1 448 47.3
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 9.2e-91 338.2 433 43.2
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 5.1e-89 332.4 403 45.9
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 2.5e-88 330.1 507 43.0
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 2.8e-87 326.6 403 52.1
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 1.3e-84 317.8 390 51.3
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.0e-81 308.1 562 38.8
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.3e-81 307.0 409 48.4
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 8.1e-79 298.5 499 42.1
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 5.1e-73 279.3 290 56.9
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 4.5e-69 266.2 390 45.9
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 7.6e-69 265.4 206 58.3
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 6.0e-66 255.8 210 59.5
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 1.5e-40 171.4 118 66.1
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 6.9e-38 162.5 407 35.1
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.9e-27 127.9 185 40.0
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 2.1e-26 124.4 123 55.3
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 1.1e-22 112.1 215 35.3
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 3.5e-21 107.1 114 44.7
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 4.0e-17 93.6 74 64.9
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 1.2e-13 82.0 71 50.7
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 1.1e-11 75.5 60 55.0
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.2e-10 72.0 58 53.4
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 7.5e-08 62.8 60 46.7
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 1.7e-07 61.6 43 60.5
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 8.3e-07 59.3 97 37.1
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 7.0e-06 56.2 48 50.0


User provided reference genes

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