Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G475 Micromonas commoda HOM05D006172 ORTHO05D005515 0.0e+00 2172.9 1108 100.0
PRCOL_00000475 Prasinoderma coloniale HOM05D006172 ORTHO05D005515 1.4e-167 594.7 1065 39.7
Cre14.g626634 Chlamydomonas reinhardtii HOM05D006172 ORTHO05D005515 4.1e-106 390.6 1122 31.4
RcHm_v2.0_Chr5g0003171 Rosa chinensis HOM05D006172 ORTHO05D005515 1.2e-81 309.3 1029 26.7
SEGI_01208 Sequoiadendron giganteum HOM05D006172 ORTHO05D005515 2.7e-81 308.1 420 43.1
FvH4_3g02080 Fragaria vesca HOM05D006172 ORTHO05D005515 5.9e-81 307.0 1025 27.1
CsaV3_6G049060 Cucumis sativus L. HOM05D006172 ORTHO05D005515 7.7e-81 306.6 421 43.9
HanXRQChr05g0129541 Helianthus annuus HOM05D006172 ORTHO05D005515 1.0e-80 306.2 410 45.4
HanXRQChr05g0129551 Helianthus annuus HOM05D006172 ORTHO05D005515 1.0e-80 306.2 410 45.4
MD10G1321300 Malus domestica HOM05D006172 ORTHO05D005515 1.0e-80 306.2 1045 26.5
Peaxi162Scf00627g00035 Petunia axillaris HOM05D006172 ORTHO05D005515 2.9e-80 304.7 1004 27.4
Solyc05g055610.4 Solanum lycopersicum HOM05D006172 ORTHO05D005515 8.6e-80 303.1 1010 27.0
PGSC0003DMG400023367 Solanum tuberosum HOM05D006172 ORTHO05D005515 1.1e-79 302.8 413 43.6
Thhalv10028391m.g Eutrema salsugineum HOM05D006172 ORTHO05D005515 1.5e-79 302.4 1018 27.2
Sopen05g034060 Solanum pennellii HOM05D006172 ORTHO05D005515 1.9e-79 302.0 413 43.6
Pp3c9_15020 Physcomitrium patens HOM05D006172 ORTHO05D005515 5.5e-79 300.4 438 43.8
QL05p073195 Quercus lobata HOM05D006172 ORTHO05D005515 5.5e-79 300.4 1049 27.1
Sp6g04230 Schrenkiella parvula HOM05D006172 ORTHO05D005515 5.5e-79 300.4 1010 27.2
ATR0794G123 Amborella trichopoda HOM05D006172 ORTHO05D005515 7.2e-79 300.1 418 41.4
A03p30170 Brassica napus HOM05D006172 ORTHO05D005515 9.5e-79 299.7 1008 27.1
Lsat_1_v5_gn_7_15980 Lactuca sativa HOM05D006172 ORTHO05D005515 1.2e-78 299.3 405 44.4
COL.COLO4_31773 Corchorus olitorius HOM05D006172 ORTHO05D005515 2.1e-78 298.5 428 41.4
TWI38G1682 Tripterygium wilfordii HOM05D006172 ORTHO05D005515 2.1e-78 298.5 1042 26.7
FAN21G3941 Fragaria x ananassa HOM05D006172 ORTHO05D005515 2.8e-78 298.1 1021 27.0
PGR042G0524 Punica granatum HOM05D006172 ORTHO05D005515 2.8e-78 298.1 1032 26.9
AT4G04670 Arabidopsis thaliana HOM05D006172 ORTHO05D005515 3.6e-78 297.7 1004 26.7
Mapoly0137s0034 Marchantia polymorpha HOM05D006172 ORTHO05D005515 4.7e-78 297.4 434 43.3
Carub.0006s3250 Capsella rubella HOM05D006172 ORTHO05D005515 1.4e-77 295.8 1010 27.1
FAN25G0496 Fragaria x ananassa HOM05D006172 ORTHO05D005515 1.8e-77 295.4 1022 26.5
Thecc.06G220200 Theobroma cacao HOM05D006172 ORTHO05D005515 2.3e-77 295.0 444 40.5
C03p36400 Brassica napus HOM05D006172 ORTHO05D005515 3.0e-77 294.7 965 27.3
AL6G48130 Arabidopsis lyrata HOM05D006172 ORTHO05D005515 4.0e-77 294.3 1008 26.5
CANSAT56G2229 Cannabis sativa HOM05D006172 ORTHO05D005515 4.0e-77 294.3 1066 26.1
Nitab4.5_0006322g0020 Nicotiana tabacum HOM05D006172 ORTHO05D005515 4.0e-77 294.3 473 40.0
THA.LOC104813121 Tarenaya hassleriana HOM05D006172 ORTHO05D005515 4.0e-77 294.3 432 41.4
CAN.G694.35 Capsicum annuum HOM05D006172 ORTHO05D005515 5.2e-77 293.9 413 42.9
GSVIVG01012726001 Vitis vinifera HOM05D006172 ORTHO05D005515 5.2e-77 293.9 1029 27.2
Potri.004G015200 Populus trichocarpa HOM05D006172 ORTHO05D005515 8.9e-77 293.1 1035 26.1
Eucgr.E04055 Eucalyptus grandis HOM05D006172 ORTHO05D005515 1.5e-76 292.4 408 41.7
Prupe.4G021000 Prunus persica HOM05D006172 ORTHO05D005515 1.5e-76 292.4 408 41.4
BraA03t12201Z Brassica rapa HOM05D006172 ORTHO05D005515 2.6e-76 291.6 1029 26.5
AUR62012709 Chenopodium quinoa HOM05D006172 ORTHO05D005515 2.6e-76 291.6 463 40.8
ClCG01G022000 Citrullus lanatus HOM05D006172 ORTHO05D005515 2.6e-76 291.6 438 41.6
Duzib192G0085 Durio zibethinus HOM05D006172 ORTHO05D005515 2.6e-76 291.6 1047 25.4
Migut.M01317 Erythranthe guttata HOM05D006172 ORTHO05D005515 2.6e-76 291.6 410 42.2
Aa31LG9G9740 Aethionema arabicum HOM05D006172 ORTHO05D005515 9.8e-76 289.7 416 41.3
Aqoxy1G02151 Aquilegia oxysepala HOM05D006172 ORTHO05D005515 9.8e-76 289.7 425 42.1
CARHR252870 Cardamine hirsuta HOM05D006172 ORTHO05D005515 9.8e-76 289.7 439 41.0
Sed0002789 Sechium edule HOM05D006172 ORTHO05D005515 1.7e-75 288.9 469 39.7
CiPaw.09G091900 Carya illinoinensis HOM05D006172 ORTHO05D005515 3.7e-75 287.7 417 41.7
SGA_v2.0_scaffold4G01916 Striga asiatica HOM05D006172 ORTHO05D005515 3.7e-75 287.7 412 43.0
PSO675G8381 Papaver somniferum HOM05D006172 ORTHO05D005515 4.9e-75 287.3 1053 26.2
Dinv13892 Davidia involucrata HOM05D006172 ORTHO05D005515 1.1e-74 286.2 412 42.2
Rhsim13G0154200 Rhododendron simsii HOM05D006172 ORTHO05D005515 1.4e-74 285.8 422 40.3
Sabra04G0007400 Salix brachista HOM05D006172 ORTHO05D005515 1.8e-74 285.4 426 40.8
CSS0038964 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 2.4e-74 285.0 423 41.6
Gorai.009G178500 Gossypium raimondii HOM05D006172 ORTHO05D005515 3.1e-74 284.6 403 41.7
AUR62021945 Chenopodium quinoa HOM05D006172 ORTHO05D005515 4.1e-74 284.3 407 42.8
Ca_21083_v3 Cicer arietinum L. HOM05D006172 ORTHO05D005515 4.1e-74 284.3 440 39.8
Manes.16G007200 Manihot esculenta HOM05D006172 ORTHO05D005515 4.1e-74 284.3 413 40.0
Atru.chr10.2219 Acer truncatum HOM05D006172 ORTHO05D005515 5.4e-74 283.9 1045 26.2
CSS0050420 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 7.0e-74 283.5 410 42.2
vmacro03686 Vaccinium macrocarpon HOM05D006172 ORTHO05D005515 9.2e-74 283.1 421 41.1
PSO541G4594 Papaver somniferum HOM05D006172 ORTHO05D005515 1.6e-73 282.3 417 40.3
Gohir.D05G173300 Gossypium hirsutum HOM05D006172 ORTHO05D005515 3.5e-73 281.2 403 41.2
Lj4g0023330 Lotus japonicus HOM05D006172 ORTHO05D005515 3.5e-73 281.2 408 41.9
DCAR_028182 Daucus carota HOM05D006172 ORTHO05D005515 4.5e-73 280.8 437 39.8
Hund21409 Selenicereus undatus HOM05D006172 ORTHO05D005515 5.9e-73 280.4 407 42.5
Glyma.07G260400 Glycine max HOM05D006172 ORTHO05D005515 1.0e-72 279.6 1052 26.0
TAR626G1786 Trochodendron aralioides HOM05D006172 ORTHO05D005515 1.0e-72 279.6 407 40.5
Ah.09g234910 Amaranthus hybridus HOM05D006172 ORTHO05D005515 1.3e-72 279.3 405 42.5
Nn1g07129 Nelumbo nucifera HOM05D006172 ORTHO05D005515 1.3e-72 279.3 412 40.8
BolC3t15953H Brassica oleracea HOM05D006172 ORTHO05D005515 1.1e-71 276.2 1026 25.7
BcaB01g02576 Brassica carinata HOM05D006172 ORTHO05D005515 1.5e-71 275.8 985 28.2
Zm00001eb322630 Zea mays HOM05D006172 ORTHO05D005515 1.5e-71 275.8 424 40.8
Gohir.A05G170200 Gossypium hirsutum HOM05D006172 ORTHO05D005515 7.3e-71 273.5 423 39.5
Phvul.003G078700 Phaseolus vulgaris HOM05D006172 ORTHO05D005515 1.2e-70 272.7 423 40.7
AagrBONN_evm.TU.Sc2ySwM_362.1356 Anthoceros agrestis HOM05D006172 ORTHO05D005515 2.1e-70 271.9 468 39.1
arahy.Tifrunner.gnm1.ann1.3R4FRS Arachis hypogaea HOM05D006172 ORTHO05D005515 2.1e-70 271.9 425 40.0
Medtr4g132120 Medicago truncatula HOM05D006172 ORTHO05D005515 6.1e-70 270.4 427 39.6
Cc09_g01690 Coffea canephora HOM05D006172 ORTHO05D005515 8.0e-70 270.0 437 40.0
Oeu013636.1 Olea europaea HOM05D006172 ORTHO05D005515 1.0e-69 269.6 434 39.4
arahy.Tifrunner.gnm1.ann1.GS5NL2 Arachis hypogaea HOM05D006172 ORTHO05D005515 1.4e-69 269.2 435 39.3
Lalb_Chr13g0304211 Lupinus albus HOM05D006172 ORTHO05D005515 1.4e-69 269.2 412 39.3
CDE11G0909 Ceratophyllum demersum HOM05D006172 ORTHO05D005515 2.0e-68 265.4 408 40.9
CBR_g48263 Chara braunii HOM05D006172 ORTHO05D005515 2.6e-68 265.0 441 39.7
Lj1A1230T62 Lonicera japonica HOM05D006172 ORTHO05D005515 2.6e-68 265.0 441 39.5
MELO3C007389.2 Cucumis melo HOM05D006172 ORTHO05D005515 2.2e-67 261.9 401 42.1
ECA236G0092 Erigeron canadensis HOM05D006172 ORTHO05D005515 3.7e-67 261.2 397 42.3
EL10Ac8g20057 Beta vulgaris HOM05D006172 ORTHO05D005515 1.4e-66 259.2 412 41.7
Ciclev10018338m.g Citrus clementina HOM05D006172 ORTHO05D005515 3.2e-66 258.1 1030 25.2
HPP92_012401 Vanilla planifolia HOM05D006172 ORTHO05D005515 1.7e-64 252.3 416 39.7
VMungo1215G3219 Vigna mungo HOM05D006172 ORTHO05D005515 3.9e-64 251.1 411 39.2
SHI02198 Sapria himalayana HOM05D006172 ORTHO05D005515 6.2e-62 243.8 266 48.5
Sc05g0009930 Simmondsia chinensis HOM05D006172 ORTHO05D005515 4.0e-61 241.1 395 39.0
Sc05g0009220 Simmondsia chinensis HOM05D006172 ORTHO05D005515 8.9e-61 240.0 394 39.1
Haze_06799 Corylus avellana HOM05D006172 ORTHO05D005515 7.5e-60 236.9 970 25.7
unitig_37.g12153 Utricularia gibba HOM05D006172 ORTHO05D005515 3.7e-59 234.6 275 46.5
Cpa.g.sc152.15 Carica papaya HOM05D006172 ORTHO05D005515 1.2e-54 219.5 415 36.1
MBI02_g46431_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 4.9e-51 207.6 362 37.3
Psat4g006680 Pisum sativum HOM05D006172 ORTHO05D005515 6.4e-51 207.2 370 37.6
Oeu014516.1 Olea europaea HOM05D006172 ORTHO05D005515 1.4e-50 206.1 182 56.0
SMO172G0113 Selaginella moellendorffii HOM05D006172 ORTHO05D005515 1.4e-50 206.1 232 49.1
MCO07G231 Micromonas commoda HOM05D004978 ORTHO05D005621 8.4e-43 180.3 322 37.0
PRCOL_00001097 Prasinoderma coloniale HOM05D000229 ORTHO05D005621 3.5e-41 174.9 359 34.5
Nitab4.5_0000096g0040 Nicotiana tabacum HOM05D006172 ORTHO05D005515 2.5e-39 168.7 406 33.0
AagrBONN_evm.TU.Sc2ySwM_362.1355 Anthoceros agrestis HOM05D006172 ORTHO05D005515 5.3e-37 161.0 227 42.3
Atru.chr10.2224 Acer truncatum HOM05D006172 ORTHO05D005515 2.6e-36 158.7 212 42.0
CARHR252880 Cardamine hirsuta HOM05D006172 ORTHO05D005515 2.2e-35 155.6 203 41.4
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 2.2e-35 155.6 231 39.4
SMO139G0125 Selaginella moellendorffii HOM05D006172 ORTHO05D005515 4.2e-34 151.4 222 38.7
MBI02_g21855_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 6.0e-33 147.5 172 46.5
SHI02199 Sapria himalayana HOM05D006172 ORTHO05D005515 7.8e-33 147.1 206 41.3
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 1.0e-32 146.7 215 36.7
Actinidia28669 Actinidia chinensis HOM05D006172 ORTHO05D005515 1.5e-31 142.9 207 38.6
CAN.G694.33 Capsicum annuum HOM05D006172 ORTHO05D005515 2.1e-30 139.0 202 37.1
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 2.1e-25 122.5 163 41.1
TPR.G37083 Trifolium pratense HOM05D006172 ORTHO05D005515 1.3e-22 113.2 92 59.8
TPR.G20315 Trifolium pratense HOM05D006172 ORTHO05D005515 2.6e-20 105.5 103 51.5
CDE11G0148 Ceratophyllum demersum HOM05D006172 ORTHO05D005515 8.4e-19 100.5 166 36.7
HPP92_012400 Vanilla planifolia HOM05D006172 ORTHO05D005515 7.9e-17 94.0 207 32.4
Cfa027274 Carpinus fangiana HOM05D006172 ORTHO05D005515 1.6e-14 86.3 251 31.1
HPP92_012316 Vanilla planifolia HOM05D006172 ORTHO05D005515 1.4e-13 83.2 105 43.8
unitig_37.g12155 Utricularia gibba HOM05D006172 ORTHO05D005515 1.3e-11 76.6 89 40.4
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 6.5e-11 74.3 291 27.1
BolC3t13593H Brassica oleracea HOM05D004978 ORTHO05D005621 6.5e-11 74.3 291 27.1
C03p11220 Brassica napus HOM05D004978 ORTHO05D005621 1.1e-10 73.6 291 27.1
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 1.2e-09 70.1 271 26.6
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 1.6e-09 69.7 287 26.8
Thhalv10013262m.g Eutrema salsugineum HOM05D004978 ORTHO05D005621 2.1e-09 69.3 284 26.1
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 6.7e-08 64.3 121 34.7
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 6.7e-08 64.3 303 24.4
CARHR193040 Cardamine hirsuta HOM05D004978 ORTHO05D005621 1.5e-07 63.2 121 33.9
unitig_37.g12154 Utricularia gibba HOM05D006172 ORTHO05D005515 1.5e-07 63.2 71 43.7
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 2.5e-07 62.4 121 32.2
arahy.Tifrunner.gnm1.ann1.54WUVN Arachis hypogaea HOM05D004978 ORTHO05D005621 7.4e-07 60.8 118 34.7
Carub.0006s1818 Capsella rubella HOM05D004978 ORTHO05D005621 7.4e-07 60.8 121 33.1
MD11G1278700 Malus domestica HOM05D004978 ORTHO05D005621 7.4e-07 60.8 125 32.8
SMO367G0146 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 7.4e-07 60.8 266 25.9
Mapoly0003s0071 Marchantia polymorpha HOM05D004978 ORTHO05D005621 9.7e-07 60.5 104 41.3
Mapoly0036s0149 Marchantia polymorpha HOM05D004419 ORTHO05D005480 9.7e-07 60.5 142 32.4
arahy.Tifrunner.gnm1.ann1.ZM38TH Arachis hypogaea HOM05D004978 ORTHO05D005621 1.3e-06 60.1 118 34.7
Phvul.007G175000 Phaseolus vulgaris HOM05D004978 ORTHO05D005621 1.3e-06 60.1 105 38.1
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 1.6e-06 59.7 314 23.2
Sp6g24570 Schrenkiella parvula HOM05D004978 ORTHO05D005621 4.8e-06 58.2 113 32.7
AL6G31360 Arabidopsis lyrata HOM05D004978 ORTHO05D005621 6.3e-06 57.8 121 31.4
Prupe.8G234700 Prunus persica HOM05D004978 ORTHO05D005621 6.3e-06 57.8 125 34.4
Cfa025498 Carpinus fangiana HOM05D006172 ORTHO05D005515 8.2e-06 57.4 99 38.4
SGA_v2.0_scaffold1G00534 Striga asiatica HOM05D004978 ORTHO05D005621 8.2e-06 57.4 141 33.3
VMungo0720G1803 Vigna mungo HOM05D004978 ORTHO05D005621 8.2e-06 57.4 192 29.2


User provided reference genes

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