Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G505 Micromonas commoda HOM05D000904 ORTHO05D005281 1.6e-241 839.0 417 100.0
BolC8t48998H Brassica oleracea HOM05D000904 ORTHO05D005281 6.4e-12 76.3 332 25.3
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 8.4e-12 75.9 299 25.4
BcaNung05227 Brassica carinata HOM05D000904 ORTHO05D005281 1.1e-11 75.5 312 24.4
BcaNung05165 Brassica carinata HOM05D000904 ORTHO05D005281 1.4e-11 75.1 299 25.1
C08p13580 Brassica napus HOM05D000904 ORTHO05D006931 1.4e-11 75.1 299 25.1
A08p34030 Brassica napus HOM05D000904 ORTHO05D006931 1.9e-11 74.7 329 25.5
CARHR010440 Cardamine hirsuta HOM05D000904 ORTHO05D005281 2.4e-11 74.3 153 34.0
Sp1g08910 Schrenkiella parvula HOM05D000904 ORTHO05D005281 5.4e-11 73.2 153 34.0
Sc03g0004970 Simmondsia chinensis HOM05D000904 ORTHO05D005281 5.4e-11 73.2 153 34.6
AL1G21040 Arabidopsis lyrata HOM05D000904 ORTHO05D005281 9.2e-11 72.4 153 32.7
AT1G10310 Arabidopsis thaliana HOM05D000904 ORTHO05D005281 9.2e-11 72.4 153 32.7
Carub.0001s0972 Capsella rubella HOM05D000904 ORTHO05D005281 9.2e-11 72.4 153 34.6
Sabra01G0173500 Salix brachista HOM05D000904 ORTHO05D005281 9.2e-11 72.4 328 25.3
Aa31LG1G4630 Aethionema arabicum HOM05D000904 ORTHO05D005281 1.2e-10 72.0 153 32.0
Ah.14g085600 Amaranthus hybridus HOM05D000904 ORTHO05D005281 1.6e-10 71.6 316 24.7
Actinidia26192 Actinidia chinensis HOM05D000904 ORTHO05D005281 2.1e-10 71.2 158 32.3
Thhalv10008625m.g Eutrema salsugineum HOM05D000904 ORTHO05D005281 2.7e-10 70.9 153 32.0
CSS0036471 Camellia sinensis var. sinensis HOM05D000904 ORTHO05D005281 3.5e-10 70.5 158 31.6
Cfa004449 Carpinus fangiana HOM05D000904 ORTHO05D005281 3.5e-10 70.5 153 32.0
AUR62034943 Chenopodium quinoa HOM05D000904 ORTHO05D005281 3.5e-10 70.5 153 34.0
Rhsim05G0115900 Rhododendron simsii HOM05D000904 ORTHO05D005281 4.6e-10 70.1 153 32.0
Actinidia01632 Actinidia chinensis HOM05D000904 ORTHO05D005281 6.0e-10 69.7 158 31.0
CiPaw.05G002000 Carya illinoinensis HOM05D000904 ORTHO05D005281 6.0e-10 69.7 153 31.4
PGSC0003DMG401024871 Solanum tuberosum HOM05D000904 ORTHO05D005281 6.0e-10 69.7 158 31.0
MELO3C026468.2 Cucumis melo HOM05D000904 ORTHO05D005281 7.8e-10 69.3 151 29.8
Oeu043613.1 Olea europaea HOM05D000904 ORTHO05D005281 7.8e-10 69.3 158 30.4
ATR1089G061 Amborella trichopoda HOM05D000904 ORTHO05D005281 1.0e-09 68.9 312 24.0
CsaV3_5G013960 Cucumis sativus L. HOM05D000904 ORTHO05D005281 1.0e-09 68.9 315 25.1
Lj4g0025399 Lotus japonicus HOM05D000904 ORTHO05D005281 1.0e-09 68.9 153 32.0
Sed0005829 Sechium edule HOM05D000904 ORTHO05D005281 1.3e-09 68.6 319 21.9
FAN04G1787 Fragaria x ananassa HOM05D000904 ORTHO05D005281 1.7e-09 68.2 151 31.8
GSVIVG01023151001 Vitis vinifera HOM05D000904 ORTHO05D005281 1.7e-09 68.2 364 23.4
CsaV3_1G039120 Cucumis sativus L. HOM05D000904 ORTHO05D005281 2.3e-09 67.8 148 29.7
Migut.B00726 Erythranthe guttata HOM05D000904 ORTHO05D005281 3.0e-09 67.4 153 30.7
Thecc.06G016900 Theobroma cacao HOM05D000904 ORTHO05D005281 3.0e-09 67.4 153 32.0
Cc02_g23520 Coffea canephora HOM05D000904 ORTHO05D005281 5.1e-09 66.6 158 29.1
CsaV3_5G015620 Cucumis sativus L. HOM05D000904 ORTHO05D005281 5.1e-09 66.6 153 29.4
Dinv29675 Davidia involucrata HOM05D000904 ORTHO05D005281 5.1e-09 66.6 158 29.7
HanXRQChr12g0381691 Helianthus annuus HOM05D000904 ORTHO05D005281 5.1e-09 66.6 153 29.4
MBI06_g32155_MAGBIO Magnolia biondii HOM05D000904 ORTHO05D005281 5.1e-09 66.6 153 29.4
PSO210G7568 Papaver somniferum HOM05D000904 ORTHO05D005281 5.1e-09 66.6 153 32.0
PSO447G0087 Papaver somniferum HOM05D000904 ORTHO05D005281 5.1e-09 66.6 153 32.0
Sopen01g045520 Solanum pennellii HOM05D000904 ORTHO05D005281 5.1e-09 66.6 153 30.1
Ah.09g231850 Amaranthus hybridus HOM05D000904 ORTHO05D005281 6.6e-09 66.2 156 31.4
MSTRG.16471 Avicennia marina HOM05D000904 ORTHO05D005281 6.6e-09 66.2 158 31.0
CANSAT56G0278 Cannabis sativa HOM05D000904 ORTHO05D005281 6.6e-09 66.2 158 31.0
CDE02G4514 Ceratophyllum demersum HOM05D000904 ORTHO05D005281 6.6e-09 66.2 302 23.8
ClCG11G000420 Citrullus lanatus HOM05D000904 ORTHO05D005281 6.6e-09 66.2 135 29.6
MELO3C026450.2 Cucumis melo HOM05D000904 ORTHO05D005281 6.6e-09 66.2 312 24.7
CsaV3_5G013950 Cucumis sativus L. HOM05D000904 ORTHO05D005281 6.6e-09 66.2 155 31.0
CsaV3_5G015540 Cucumis sativus L. HOM05D000904 ORTHO05D005281 6.6e-09 66.2 148 27.0
Migut.B00727 Erythranthe guttata HOM05D000904 ORTHO05D005281 6.6e-09 66.2 153 28.1
Manes.07G028700 Manihot esculenta HOM05D000904 ORTHO05D005281 6.6e-09 66.2 153 30.7
Zm00001eb243890 Zea mays HOM05D000904 ORTHO05D005281 6.6e-09 66.2 158 29.7
Peaxi162Scf00011g01843 Petunia axillaris HOM05D006686 ORTHO05D008463 8.7e-09 65.9 151 29.1
SGA_v2.0_scaffold165G38271 Striga asiatica HOM05D000904 ORTHO05D005281 8.7e-09 65.9 158 30.4
THA.LOC104810194 Tarenaya hassleriana HOM05D000904 ORTHO05D005281 8.7e-09 65.9 153 28.8
THA.LOC104821580 Tarenaya hassleriana HOM05D000904 ORTHO05D005281 8.7e-09 65.9 153 28.8
Gohir.A10G003300 Gossypium hirsutum HOM05D000904 ORTHO05D005281 1.1e-08 65.5 153 30.7
CAN.G855.46 Capsicum annuum HOM05D000904 ORTHO05D005281 1.5e-08 65.1 153 29.4
Gohir.D10G003300 Gossypium hirsutum HOM05D000904 ORTHO05D005281 1.5e-08 65.1 153 30.7
Gorai.011G003700 Gossypium raimondii HOM05D000904 ORTHO05D005281 1.5e-08 65.1 153 30.7
Sed0012472 Sechium edule HOM05D000904 ORTHO05D005281 1.5e-08 65.1 153 30.7
VMungo1215G2691 Vigna mungo HOM05D000904 ORTHO05D005281 1.5e-08 65.1 160 30.0
ClCG11G000320 Citrullus lanatus HOM05D000904 ORTHO05D005281 1.9e-08 64.7 148 27.0
MELO3C026455.2 Cucumis melo HOM05D000904 ORTHO05D005281 1.9e-08 64.7 152 27.0
CsaV3_5G013930 Cucumis sativus L. HOM05D000904 ORTHO05D005281 1.9e-08 64.7 152 26.3
Eucgr.I02792 Eucalyptus grandis HOM05D000904 ORTHO05D005281 1.9e-08 64.7 158 30.4
Potri.004G228533 Populus trichocarpa HOM05D000904 ORTHO05D005281 1.9e-08 64.7 158 31.0
unitig_37.g12401 Utricularia gibba HOM05D000904 ORTHO05D005281 1.9e-08 64.7 159 30.2
Atru.chr6.331 Acer truncatum HOM05D000904 ORTHO05D005281 2.5e-08 64.3 153 30.7
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.5e-08 64.3 148 29.1
ClCG11G000390 Citrullus lanatus HOM05D000904 ORTHO05D005281 2.5e-08 64.3 158 29.7
CsaV3_5G014070 Cucumis sativus L. HOM05D000904 ORTHO05D005281 2.5e-08 64.3 136 31.6
ECA248G0469 Erigeron canadensis HOM05D000904 ORTHO05D005281 2.5e-08 64.3 153 29.4
MD08G1247500 Malus domestica HOM05D000904 ORTHO05D005281 2.5e-08 64.3 158 31.0
Sed0015061 Sechium edule HOM05D000904 ORTHO05D005281 2.5e-08 64.3 322 19.6
SMO196G0063 Selaginella moellendorffii HOM05D000904 ORTHO05D005281 2.5e-08 64.3 307 25.4
Cpa.g.sc192.24 Carica papaya HOM05D000904 ORTHO05D005281 3.3e-08 63.9 153 31.4
Duzib192G0673 Durio zibethinus HOM05D000904 ORTHO05D005281 3.3e-08 63.9 158 28.5
RcHm_v2.0_Chr7g0220131 Rosa chinensis HOM05D000904 ORTHO05D005281 3.3e-08 63.9 151 31.1
TWI14G0421 Tripterygium wilfordii HOM05D000904 ORTHO05D005281 3.3e-08 63.9 153 30.1
CsaV3_5G015550 Cucumis sativus L. HOM05D000904 ORTHO05D005281 4.3e-08 63.5 148 28.4
Prupe.1G584900 Prunus persica HOM05D000904 ORTHO05D005281 4.3e-08 63.5 158 31.6
EL10Ac5g12512 Beta vulgaris HOM05D000904 ORTHO05D005281 5.6e-08 63.2 153 31.4
Lsat_1_v5_gn_9_121801 Lactuca sativa HOM05D000904 ORTHO05D005281 5.6e-08 63.2 157 27.4
Nitab4.5_0001057g0010 Nicotiana tabacum HOM05D000904 ORTHO05D005281 5.6e-08 63.2 153 28.1
arahy.Tifrunner.gnm1.ann1.87EYQC Arachis hypogaea HOM05D000904 ORTHO05D005281 7.3e-08 62.8 154 29.9
arahy.Tifrunner.gnm1.ann1.R3DQKX Arachis hypogaea HOM05D000904 ORTHO05D005281 7.3e-08 62.8 154 29.9
ClCG11G000610 Citrullus lanatus HOM05D000904 ORTHO05D005281 7.3e-08 62.8 131 32.8
MELO3C027175.2 Cucumis melo HOM05D000904 ORTHO05D005281 7.3e-08 62.8 153 28.1
PSO210G6890 Papaver somniferum HOM05D000904 ORTHO05D005281 7.3e-08 62.8 153 31.4
Lj5A282G72 Lonicera japonica HOM05D000904 ORTHO05D005281 9.6e-08 62.4 158 27.2
COL.COLO4_22860 Corchorus olitorius HOM05D000904 ORTHO05D005281 1.2e-07 62.0 153 30.7
Nn5g27347 Nelumbo nucifera HOM05D000904 ORTHO05D005281 1.2e-07 62.0 158 28.5
CsaV3_5G015290 Cucumis sativus L. HOM05D000904 ORTHO05D005281 1.6e-07 61.6 157 26.8
SEGI_40058 Sequoiadendron giganteum HOM05D000904 ORTHO05D005281 2.1e-07 61.2 101 34.7
Hma1.2p1_0052F.1_g029960 Hydrangea macrophylla HOM05D000904 ORTHO05D005281 2.8e-07 60.8 171 29.2
Medtr4g066050 Medicago truncatula HOM05D000904 ORTHO05D005281 2.8e-07 60.8 156 28.2
Medtr4g134660 Medicago truncatula HOM05D000904 ORTHO05D005281 2.8e-07 60.8 155 29.7
Sp6g10930 Schrenkiella parvula HOM05D000904 ORTHO05D005281 2.8e-07 60.8 166 33.1
HPP92_024399 Vanilla planifolia HOM05D000904 ORTHO05D005281 2.8e-07 60.8 153 28.1
Ciclev10002114m.g Citrus clementina HOM05D000904 ORTHO05D005281 3.6e-07 60.5 158 29.1
CsaV3_1G039110 Cucumis sativus L. HOM05D000904 ORTHO05D005281 3.6e-07 60.5 151 27.2
Eucgr.I02793 Eucalyptus grandis HOM05D000904 ORTHO05D005281 3.6e-07 60.5 153 28.8
SEGI_19846 Sequoiadendron giganteum HOM05D000904 ORTHO05D005281 4.7e-07 60.1 311 20.9
Sed0023226 Sechium edule HOM05D000904 ORTHO05D005281 8.1e-07 59.3 131 30.5
Hund15393 Selenicereus undatus HOM05D000904 ORTHO05D005281 8.1e-07 59.3 92 33.7
Aqoxy5G01864 Aquilegia oxysepala HOM05D000904 ORTHO05D005281 1.4e-06 58.5 153 31.4
AUR62022331 Chenopodium quinoa HOM05D000904 ORTHO05D005281 1.4e-06 58.5 116 31.9
Sed0008301 Sechium edule HOM05D000904 ORTHO05D005281 1.4e-06 58.5 136 30.1
Eucgr.I02794 Eucalyptus grandis HOM05D000904 ORTHO05D005281 2.4e-06 57.8 104 31.7
Glyma.03G006500 Glycine max HOM05D000904 ORTHO05D005281 2.4e-06 57.8 154 30.5
ClCG11G000340 Citrullus lanatus HOM05D000904 ORTHO05D005281 3.1e-06 57.4 96 31.2
Zm00001eb378920 Zea mays HOM05D000904 ORTHO05D005281 5.2e-06 56.6 95 33.7
MELO3C034313.2 Cucumis melo HOM05D000904 ORTHO05D005281 6.9e-06 56.2 101 30.7
Dinv29676 Davidia involucrata HOM05D000904 ORTHO05D005281 9.0e-06 55.8 104 30.8


User provided reference genes

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