Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G433 Micromonas commoda HOM05D003468 ORTHO05D002806 0.0e+00 1387.1 718 100.0
Sabra13G0124400 Salix brachista HOM05D003468 ORTHO05D002806 1.3e-09 69.3 65 56.9
Pp3s241_30 Physcomitrium patens HOM05D011903 ORTHO05D002806 5.1e-09 67.4 62 46.8
SGA_v2.0_scaffold77G25360 Striga asiatica HOM05D003468 ORTHO05D002806 5.1e-09 67.4 96 44.8
Carub.0008s1888 Capsella rubella HOM05D009360 ORTHO05D002806 1.1e-08 66.2 62 53.2
Pp3c2_40 Physcomitrium patens HOM05D011903 ORTHO05D002806 1.5e-08 65.9 55 50.9
Hma1.2p1_0170F.1_g075010 Hydrangea macrophylla HOM05D003468 ORTHO05D002806 1.9e-08 65.5 96 41.7
Pp3c12_8190 Physcomitrium patens HOM05D003468 ORTHO05D002806 1.9e-08 65.5 80 43.8
Potri.013G154500 Populus trichocarpa HOM05D003468 ORTHO05D002806 2.5e-08 65.1 65 53.8
Lj2A1101T50 Lonicera japonica HOM05D003468 ORTHO05D002806 3.3e-08 64.7 94 41.5
Manes.10G065600 Manihot esculenta HOM05D003468 ORTHO05D002806 3.3e-08 64.7 95 38.9
Pp3s76_20 Physcomitrium patens HOM05D011903 ORTHO05D002806 3.3e-08 64.7 127 32.3
Pp3c5_29220 Physcomitrium patens HOM05D011903 ORTHO05D002806 4.3e-08 64.3 127 32.3
SalBow4G1032 Salvia bowleyana HOM05D003468 ORTHO05D002806 4.3e-08 64.3 159 37.1
Eucgr.B00647 Eucalyptus grandis HOM05D003468 ORTHO05D002806 5.7e-08 63.9 56 51.8
Mapoly0007s0033 Marchantia polymorpha HOM05D003468 ORTHO05D002806 5.7e-08 63.9 49 59.2
Pp3c19_23130 Physcomitrium patens HOM05D011903 ORTHO05D002806 5.7e-08 63.9 127 32.3
Dinv28729 Davidia involucrata HOM05D003468 ORTHO05D002806 7.4e-08 63.5 95 40.0
Eucgr.B00490 Eucalyptus grandis HOM05D003468 ORTHO05D002806 7.4e-08 63.5 56 51.8
Os07g0695900 Oryza sativa ssp. japonica HOM05D003468 ORTHO05D002806 7.4e-08 63.5 54 51.9
Hund21917 Selenicereus undatus HOM05D003468 ORTHO05D002806 7.4e-08 63.5 57 52.6
AT5G58340 Arabidopsis thaliana HOM05D009360 ORTHO05D002806 9.7e-08 63.2 63 55.6
BcaB08g36171 Brassica carinata HOM05D009360 ORTHO05D002806 9.7e-08 63.2 56 55.4
Ciclev10028601m.g Citrus clementina HOM05D003468 ORTHO05D002806 9.7e-08 63.2 55 54.5
CANSAT25G2600 Cannabis sativa HOM05D003468 ORTHO05D002806 1.3e-07 62.8 101 40.6
HanXRQChr16g0522621 Helianthus annuus HOM05D003468 ORTHO05D002806 1.3e-07 62.8 57 50.9
PSO675G8835 Papaver somniferum HOM05D003468 ORTHO05D002806 1.6e-07 62.4 55 50.9
SMO367G1195 Selaginella moellendorffii HOM05D003468 ORTHO05D002806 1.6e-07 62.4 99 41.4
MSTRG.17916 Avicennia marina HOM05D003468 ORTHO05D002806 2.2e-07 62.0 226 29.6
PSO541G3532 Papaver somniferum HOM05D003468 ORTHO05D002806 2.2e-07 62.0 55 50.9
Actinidia34492 Actinidia chinensis HOM05D003468 ORTHO05D002806 2.8e-07 61.6 96 39.6
Sp6g20000 Schrenkiella parvula HOM05D009360 ORTHO05D002806 2.8e-07 61.6 55 54.5
MSTRG.9507 Avicennia marina HOM05D001027 ORTHO05D000844 3.7e-07 61.2 52 53.8
ECA247G2629 Erigeron canadensis HOM05D003468 ORTHO05D002806 3.7e-07 61.2 96 39.6
C06p04680 Brassica napus HOM05D001027 ORTHO05D000844 4.8e-07 60.8 76 42.1
PGR129G0007 Punica granatum HOM05D003468 ORTHO05D002806 4.8e-07 60.8 55 49.1
Actinidia39094 Actinidia chinensis HOM05D001027 ORTHO05D000844 6.3e-07 60.5 66 48.5
AagrBONN_evm.TU.Sc2ySwM_344.4617 Anthoceros agrestis HOM05D003468 ORTHO05D002806 6.3e-07 60.5 57 49.1
AL8G34440 Arabidopsis lyrata HOM05D009360 ORTHO05D002806 6.3e-07 60.5 60 53.3
AT1G17460 Arabidopsis thaliana HOM05D002206 ORTHO05D002219 6.3e-07 60.5 107 33.6
CBR_g6627 Chara braunii HOM05D001027 ORTHO05D000844 6.3e-07 60.5 227 27.8
ECA238G2199 Erigeron canadensis HOM05D000758 ORTHO05D001216 6.3e-07 60.5 98 35.7
FvH4_5g00450 Fragaria vesca HOM05D003468 ORTHO05D002806 6.3e-07 60.5 95 36.8
FAN08G2609 Fragaria x ananassa HOM05D003468 ORTHO05D002806 6.3e-07 60.5 95 36.8
HanXRQChr16g0497711 Helianthus annuus HOM05D006374 ORTHO05D006349 6.3e-07 60.5 63 47.6
Lsat_1_v5_gn_9_13861 Lactuca sativa HOM05D003468 ORTHO05D002806 6.3e-07 60.5 57 49.1
Sc09g0001380 Simmondsia chinensis HOM05D003468 ORTHO05D002806 6.3e-07 60.5 57 52.6
FAN16G1667 Fragaria x ananassa HOM05D003468 ORTHO05D002806 8.2e-07 60.1 95 34.7
FAN21G2193 Fragaria x ananassa HOM05D003468 ORTHO05D002806 8.2e-07 60.1 95 34.7
TAR624G1250 Trochodendron aralioides HOM05D001027 ORTHO05D000844 8.2e-07 60.1 65 46.2
AL1G29750 Arabidopsis lyrata HOM05D002206 ORTHO05D002219 1.1e-06 59.7 107 33.6
MSTRG.12708 Avicennia marina HOM05D003468 ORTHO05D002806 1.1e-06 59.7 55 49.1
CSS0030254 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 1.1e-06 59.7 71 43.7
CAN.G52.16 Capsicum annuum HOM05D001027 ORTHO05D000844 1.1e-06 59.7 65 46.2
CiPaw.04G147800 Carya illinoinensis HOM05D001027 ORTHO05D000844 1.1e-06 59.7 52 55.8
DCAR_026483 Daucus carota HOM05D003468 ORTHO05D002806 1.1e-06 59.7 53 50.9
Medtr2g031870 Medicago truncatula HOM05D001027 ORTHO05D000844 1.1e-06 59.7 64 50.0
Nn2g10321 Nelumbo nucifera HOM05D003468 ORTHO05D002806 1.1e-06 59.7 90 42.2
RcHm_v2.0_Chr5g0073101 Rosa chinensis HOM05D003468 ORTHO05D002806 1.1e-06 59.7 95 35.8
A05p42550 Brassica napus HOM05D009360 ORTHO05D002806 1.4e-06 59.3 75 44.0
Lsat_1_v5_gn_5_143181 Lactuca sativa HOM05D001027 ORTHO05D000844 1.4e-06 59.3 65 47.7
Nitab4.5_0001519g0120 Nicotiana tabacum HOM05D001027 ORTHO05D000844 1.4e-06 59.3 69 43.5
Nitab4.5_0003606g0040 Nicotiana tabacum HOM05D001027 ORTHO05D000844 1.4e-06 59.3 69 43.5
Oeu055350.2 Olea europaea HOM05D001027 ORTHO05D000844 1.4e-06 59.3 52 53.8
QL02p099821 Quercus lobata HOM05D003468 ORTHO05D002806 1.4e-06 59.3 95 38.9
SalBow1G6362 Salvia bowleyana HOM05D001027 ORTHO05D000844 1.4e-06 59.3 52 53.8
arahy.Tifrunner.gnm1.ann1.7IDQ3T Arachis hypogaea HOM05D001027 ORTHO05D000844 1.8e-06 58.9 92 40.2
MSTRG.22565 Avicennia marina HOM05D001027 ORTHO05D000844 1.8e-06 58.9 52 50.0
BcaC05g29987 Brassica carinata HOM05D009360 ORTHO05D002806 1.8e-06 58.9 75 48.0
A06p03480 Brassica napus HOM05D001027 ORTHO05D000844 1.8e-06 58.9 78 39.7
BraA06t23556Z Brassica rapa HOM05D001027 ORTHO05D000844 1.8e-06 58.9 78 39.7
CiPaw.14G050900 Carya illinoinensis HOM05D003468 ORTHO05D002806 1.8e-06 58.9 96 34.4
ECA234G4183 Erigeron canadensis HOM05D001027 ORTHO05D000844 1.8e-06 58.9 76 43.4
FAN08G2580 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.8e-06 58.9 73 42.5
QL01p024883 Quercus lobata HOM05D003468 ORTHO05D002806 1.8e-06 58.9 57 49.1
SalBow2G1693 Salvia bowleyana HOM05D003468 ORTHO05D002806 1.8e-06 58.9 55 50.9
unitig_748.g8675 Utricularia gibba HOM05D000758 ORTHO05D001216 1.8e-06 58.9 103 37.9
MSTRG.26444 Avicennia marina HOM05D001027 ORTHO05D000844 2.4e-06 58.5 52 53.8
BcaC04g19876 Brassica carinata HOM05D009360 ORTHO05D002806 2.4e-06 58.5 55 52.7
BolC9t57878H Brassica oleracea HOM05D009360 ORTHO05D002806 2.4e-06 58.5 55 52.7
BraA05t22997Z Brassica rapa HOM05D009360 ORTHO05D002806 2.4e-06 58.5 75 45.3
CANSAT54G1733 Cannabis sativa HOM05D003468 ORTHO05D002806 2.4e-06 58.5 55 49.1
Dinv12277 Davidia involucrata HOM05D003468 ORTHO05D002806 2.4e-06 58.5 96 36.5
Dinv42342 Davidia involucrata HOM05D001027 ORTHO05D000844 2.4e-06 58.5 71 43.7
MD11G1054300 Malus domestica HOM05D003468 ORTHO05D002806 2.4e-06 58.5 54 50.0
Oeu051298.2 Olea europaea HOM05D001027 ORTHO05D000844 2.4e-06 58.5 72 44.4
Pp3c3_11280 Physcomitrium patens HOM05D003468 ORTHO05D002806 2.4e-06 58.5 52 50.0
Psat4g184920 Pisum sativum HOM05D001027 ORTHO05D000844 2.4e-06 58.5 52 51.9
RcHm_v2.0_Chr5g0000441 Rosa chinensis HOM05D003468 ORTHO05D002806 2.4e-06 58.5 95 33.7
SGA_v2.0_scaffold21G09416 Striga asiatica HOM05D001027 ORTHO05D000844 2.4e-06 58.5 52 53.8
Aa31LG8G6380 Aethionema arabicum HOM05D001027 ORTHO05D000844 3.1e-06 58.2 74 43.2
CSS0029508 Camellia sinensis var. sinensis HOM05D003468 ORTHO05D002806 3.1e-06 58.2 77 44.2
FAN18G3325 Fragaria x ananassa HOM05D003468 ORTHO05D002806 3.1e-06 58.2 73 41.1
Oeu064681.2 Olea europaea HOM05D003468 ORTHO05D002806 3.1e-06 58.2 99 38.4
Prupe.6G041700 Prunus persica HOM05D003468 ORTHO05D002806 3.1e-06 58.2 55 49.1
Rhsim05G0016500 Rhododendron simsii HOM05D001027 ORTHO05D000844 3.1e-06 58.2 71 43.7
Solyc07g040920.2 Solanum lycopersicum HOM05D001027 ORTHO05D000844 3.1e-06 58.2 71 42.3
Sopen07g019970 Solanum pennellii HOM05D001027 ORTHO05D000844 3.1e-06 58.2 71 42.3
SGA_v2.0_scaffold120G32985 Striga asiatica HOM05D003468 ORTHO05D002806 3.1e-06 58.2 135 33.3
unitig_46.g18838 Utricularia gibba HOM05D001027 ORTHO05D000844 3.1e-06 58.2 73 45.2
Ah.06g186940 Amaranthus hybridus HOM05D001027 ORTHO05D000844 4.1e-06 57.8 57 52.6
Aqoxy7G01156 Aquilegia oxysepala HOM05D001027 ORTHO05D000844 4.1e-06 57.8 64 46.9
Cfa021527 Carpinus fangiana HOM05D003468 ORTHO05D002806 4.1e-06 57.8 118 32.2
Ciclev10009173m.g Citrus clementina HOM05D001027 ORTHO05D000844 4.1e-06 57.8 62 46.8
DCAR_017858 Daucus carota HOM05D003468 ORTHO05D002806 4.1e-06 57.8 56 53.6
Eucgr.C00865 Eucalyptus grandis HOM05D001027 ORTHO05D000844 4.1e-06 57.8 75 44.0
FAN13G0004 Fragaria x ananassa HOM05D003468 ORTHO05D002806 4.1e-06 57.8 73 41.1
Nn6g35538 Nelumbo nucifera HOM05D001027 ORTHO05D000844 4.1e-06 57.8 67 44.8
Peaxi162Scf00494g00102 Petunia axillaris HOM05D001027 ORTHO05D000844 4.1e-06 57.8 87 42.5
Rhsim09G0166900 Rhododendron simsii HOM05D000758 ORTHO05D001216 4.1e-06 57.8 98 36.7
TWI74G1583 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 4.1e-06 57.8 52 53.8
unitig_699.g19292 Utricularia gibba HOM05D001606 ORTHO05D002266 4.1e-06 57.8 52 53.8
Cfa003055 Carpinus fangiana HOM05D001027 ORTHO05D000844 5.3e-06 57.4 71 42.3
Prupe.8G146200 Prunus persica HOM05D001027 ORTHO05D000844 5.3e-06 57.4 65 46.2
SalBow7G4021 Salvia bowleyana HOM05D001027 ORTHO05D000844 5.3e-06 57.4 52 50.0
SGA_v2.0_scaffold23G10037 Striga asiatica HOM05D006688 ORTHO05D008550 5.3e-06 57.4 65 46.2
HPP92_009505 Vanilla planifolia HOM05D003468 ORTHO05D002806 5.3e-06 57.4 57 50.9
EL10Ac7g17237 Beta vulgaris HOM05D001027 ORTHO05D000844 6.9e-06 57.0 65 47.7
BcaB07g33443 Brassica carinata HOM05D001027 ORTHO05D000844 6.9e-06 57.0 65 46.2
Cc01_g15290 Coffea canephora HOM05D003468 ORTHO05D002806 6.9e-06 57.0 55 49.1
Thhalv10011686m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 6.9e-06 57.0 65 46.2
FAN04G1909 Fragaria x ananassa HOM05D003468 ORTHO05D002806 6.9e-06 57.0 73 41.1
Phvul.010G136000 Phaseolus vulgaris HOM05D001027 ORTHO05D000844 6.9e-06 57.0 52 51.9
Phvul.010G136100 Phaseolus vulgaris HOM05D001027 ORTHO05D000844 6.9e-06 57.0 52 51.9
QL02p062075 Quercus lobata HOM05D001027 ORTHO05D000844 6.9e-06 57.0 71 42.3
PGSC0003DMG400002489 Solanum tuberosum HOM05D001027 ORTHO05D000844 6.9e-06 57.0 52 51.9
VMungo0331G0759 Vigna mungo HOM05D001027 ORTHO05D000844 6.9e-06 57.0 52 51.9
VMungo0331G0967 Vigna mungo HOM05D001027 ORTHO05D000844 6.9e-06 57.0 52 51.9
GSVIVG01015170001 Vitis vinifera HOM05D001027 ORTHO05D000844 6.9e-06 57.0 71 43.7
Zm00001eb361200 Zea mays HOM05D001027 ORTHO05D000844 6.9e-06 57.0 52 50.0
Aa31LG10G4180 Aethionema arabicum HOM05D001027 ORTHO05D000844 9.0e-06 56.6 65 46.2
AL1G57500 Arabidopsis lyrata HOM05D001027 ORTHO05D000844 9.0e-06 56.6 65 46.2
AT1G49950 Arabidopsis thaliana HOM05D001027 ORTHO05D000844 9.0e-06 56.6 65 46.2
BcaB02g11114 Brassica carinata HOM05D001027 ORTHO05D000844 9.0e-06 56.6 65 47.7
CSS0022401 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 9.0e-06 56.6 65 47.7
CSS0034494 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 9.0e-06 56.6 65 47.7
Carub.0001s3913 Capsella rubella HOM05D001027 ORTHO05D000844 9.0e-06 56.6 65 46.2
Ciclev10026245m.g Citrus clementina HOM05D001027 ORTHO05D000844 9.0e-06 56.6 52 51.9
Haze_10266 Corylus avellana HOM05D001027 ORTHO05D000844 9.0e-06 56.6 65 47.7
Duzib264G0181 Durio zibethinus HOM05D001027 ORTHO05D000844 9.0e-06 56.6 56 51.8
Thhalv10010562m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 9.0e-06 56.6 52 50.0
Nn3g20268 Nelumbo nucifera HOM05D001027 ORTHO05D000844 9.0e-06 56.6 65 47.7
Nitab4.5_0000002g0180 Nicotiana tabacum HOM05D003468 ORTHO05D002806 9.0e-06 56.6 63 42.9
Rhsim01G0242800 Rhododendron simsii HOM05D003468 ORTHO05D002806 9.0e-06 56.6 65 47.7
Sp1g36800 Schrenkiella parvula HOM05D001027 ORTHO05D000844 9.0e-06 56.6 65 46.2
Sed0021873 Sechium edule HOM05D003468 ORTHO05D002806 9.0e-06 56.6 57 45.6
Hund17877 Selenicereus undatus HOM05D001027 ORTHO05D000844 9.0e-06 56.6 65 47.7
THA.LOC104815633 Tarenaya hassleriana HOM05D001027 ORTHO05D000844 9.0e-06 56.6 66 43.9
TPR.G8019 Trifolium pratense HOM05D001027 ORTHO05D000844 9.0e-06 56.6 65 47.7
TWI32G0968 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 9.0e-06 56.6 67 46.3
TWI36G1153 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 9.0e-06 56.6 75 42.7
unitig_32.g11570 Utricularia gibba HOM05D001027 ORTHO05D000844 9.0e-06 56.6 52 50.0
HPP92_006477 Vanilla planifolia HOM05D001027 ORTHO05D000844 9.0e-06 56.6 65 44.6
Zm00001eb220000 Zea mays HOM05D003468 ORTHO05D002806 9.0e-06 56.6 52 50.0


User provided reference genes

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