Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 7.7e-147 523.9 275 100.0
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 4.3e-73 278.9 275 55.6
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 9.6e-73 277.7 276 55.4
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 2.8e-72 276.2 299 52.2
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 3.6e-72 275.8 281 56.9
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 4.7e-72 275.4 303 52.1
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 4.7e-72 275.4 303 51.8
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 1.1e-71 274.2 303 51.8
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 1.4e-71 273.9 302 51.7
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.4e-71 273.9 300 52.7
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 1.8e-71 273.5 296 53.4
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.8e-71 273.5 294 52.4
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.8e-71 273.5 294 52.4
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 2.4e-71 273.1 293 52.2
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.1e-71 272.7 271 55.0
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 4.0e-71 272.3 303 51.2
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 4.0e-71 272.3 301 52.2
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 8.9e-71 271.2 303 50.5
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 1.2e-70 270.8 299 51.2
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 1.5e-70 270.4 300 51.7
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 2.6e-70 269.6 299 51.5
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.6e-70 269.6 303 50.5
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.6e-70 269.6 299 52.2
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 2.6e-70 269.6 301 52.2
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 2.6e-70 269.6 301 52.2
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.6e-70 269.6 301 51.5
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 2.6e-70 269.6 299 51.2
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 3.4e-70 269.2 294 52.4
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 3.4e-70 269.2 303 51.2
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 3.4e-70 269.2 299 51.2
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 3.4e-70 269.2 299 51.2
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 3.4e-70 269.2 297 50.8
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 4.4e-70 268.9 303 50.5
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 4.4e-70 268.9 300 51.7
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 5.8e-70 268.5 303 50.5
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 5.8e-70 268.5 299 51.8
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 7.6e-70 268.1 303 52.1
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 7.6e-70 268.1 292 51.0
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 7.6e-70 268.1 295 50.2
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 9.9e-70 267.7 300 53.7
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 9.9e-70 267.7 300 53.7
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 9.9e-70 267.7 300 53.7
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 9.9e-70 267.7 298 51.3
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 9.9e-70 267.7 298 51.3
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 9.9e-70 267.7 302 51.0
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 1.3e-69 267.3 302 51.0
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.7e-69 266.9 295 54.6
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.7e-69 266.9 303 50.5
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.7e-69 266.9 303 50.5
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 2.2e-69 266.5 297 51.2
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 2.2e-69 266.5 297 51.9
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 2.9e-69 266.2 299 51.5
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 2.9e-69 266.2 299 50.8
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 4.9e-69 265.4 298 50.3
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 4.9e-69 265.4 300 50.3
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 4.9e-69 265.4 299 50.8
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 4.9e-69 265.4 293 52.6
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 6.4e-69 265.0 301 50.5
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 6.4e-69 265.0 298 51.7
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 6.4e-69 265.0 303 49.8
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 8.4e-69 264.6 299 50.8
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 8.4e-69 264.6 296 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.1e-68 264.2 291 50.5
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 1.1e-68 264.2 299 51.2
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.1e-68 264.2 300 53.3
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.1e-68 264.2 301 50.8
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 2.4e-68 263.1 300 49.7
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 4.2e-68 262.3 298 52.0
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 4.2e-68 262.3 295 51.5
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 5.4e-68 261.9 295 51.5
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 5.4e-68 261.9 298 49.7
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 5.4e-68 261.9 297 49.8
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 5.4e-68 261.9 297 49.8
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 7.1e-68 261.5 298 49.7
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 7.1e-68 261.5 294 51.4
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 7.1e-68 261.5 294 51.4
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 7.1e-68 261.5 294 51.4
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 7.1e-68 261.5 308 49.4
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.2e-67 260.8 294 50.3
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 1.2e-67 260.8 294 52.0
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 1.2e-67 260.8 299 50.2
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 1.6e-67 260.4 303 50.5
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 1.6e-67 260.4 303 50.5
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 1.6e-67 260.4 303 50.5
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 2.1e-67 260.0 301 48.8
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 2.1e-67 260.0 300 50.0
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 2.7e-67 259.6 320 49.7
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.7e-67 259.6 297 49.8
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.7e-67 259.6 272 56.6
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 3.5e-67 259.2 298 50.0
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 3.5e-67 259.2 295 49.8
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 3.5e-67 259.2 284 51.8
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 3.5e-67 259.2 302 50.0
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 4.6e-67 258.8 303 49.5
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 6.0e-67 258.5 293 49.5
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 6.0e-67 258.5 300 49.7
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 7.8e-67 258.1 295 49.8
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 7.8e-67 258.1 292 49.3
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 7.8e-67 258.1 301 48.5
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 1.0e-66 257.7 295 50.2
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 1.0e-66 257.7 302 49.0
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 1.3e-66 257.3 296 50.3
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 1.3e-66 257.3 299 50.5
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.7e-66 256.9 296 49.7
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.3e-66 256.5 303 48.8
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 2.3e-66 256.5 300 49.7
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 3.0e-66 256.1 301 48.8
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 2.5e-65 253.1 298 48.7
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 3.3e-65 252.7 301 48.2
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 3.3e-65 252.7 300 48.7
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.6e-64 249.2 294 51.0
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 2.4e-63 246.5 302 47.0
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 3.1e-63 246.1 309 47.6
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 4.0e-63 245.7 273 50.5
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 1.4e-60 237.3 301 45.8
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.9e-60 236.9 301 46.8
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 7.1e-60 235.0 301 46.5
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.2e-59 234.2 307 44.6
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 1.7e-58 230.3 300 48.7
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 1.9e-57 226.9 298 47.3
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 9.9e-54 214.5 265 49.4
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.8e-53 212.6 289 45.3
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.1e-52 211.1 196 56.1
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.8e-47 193.7 221 49.8
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 1.8e-47 193.7 199 51.3
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 4.5e-46 189.1 275 44.0
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.6e-46 188.3 233 50.6
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.3e-45 187.6 194 53.1
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 5.3e-39 165.6 135 63.0
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 4.6e-35 152.5 267 38.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 2.0e-25 120.6 101 60.4
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 7.4e-25 118.6 184 41.8
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 1.3e-24 117.9 75 70.7
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.4e-23 114.4 207 38.2
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 6.9e-23 112.1 173 41.6
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 5.9e-22 109.0 194 44.8
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.0e-18 98.2 162 40.7
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.3e-18 97.1 149 42.3
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 2.6e-17 93.6 61 68.9
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 1.7e-16 90.9 149 40.9
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 2.8e-16 90.1 56 75.0
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 4.1e-15 86.3 157 38.9
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 1.2e-14 84.7 218 31.7
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 2.7e-11 73.6 69 56.5
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 6.1e-11 72.4 272 30.1
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 2.6e-09 67.0 86 38.4
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 1.1e-07 61.6 61 55.7
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 2.0e-06 57.4 120 35.0


User provided reference genes

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