Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G500 Micromonas commoda HOM05D001027 ORTHO05D000844 0.0e+00 1109.0 770 100.0
Cre04.g221200 Chlamydomonas reinhardtii HOM05D001027 ORTHO05D000844 1.3e-13 82.8 102 45.1
PRCOL_00005292 Prasinoderma coloniale HOM05D001027 ORTHO05D000844 2.8e-13 81.6 66 60.6
PRCOL_00002542 Prasinoderma coloniale HOM05D001027 ORTHO05D000844 1.0e-07 63.2 89 40.4
Eucgr.C00865 Eucalyptus grandis HOM05D001027 ORTHO05D000844 2.3e-07 62.0 50 54.0
SMO165G0149 Selaginella moellendorffii HOM05D001027 ORTHO05D000844 2.3e-07 62.0 87 41.4
Zm00001eb155280 Zea mays HOM05D001027 ORTHO05D000844 3.0e-07 61.6 49 55.1
Cc06_g11670 Coffea canephora HOM05D001027 ORTHO05D000844 3.9e-07 61.2 49 53.1
Nn6g35538 Nelumbo nucifera HOM05D001027 ORTHO05D000844 3.9e-07 61.2 49 51.0
Ah.06g186940 Amaranthus hybridus HOM05D001027 ORTHO05D000844 5.1e-07 60.8 49 53.1
C03p89390 Brassica napus HOM05D001027 ORTHO05D000844 5.1e-07 60.8 49 61.2
CAN.G52.16 Capsicum annuum HOM05D001027 ORTHO05D000844 5.1e-07 60.8 49 53.1
Nitab4.5_0001519g0120 Nicotiana tabacum HOM05D001027 ORTHO05D000844 5.1e-07 60.8 49 53.1
Nitab4.5_0003606g0040 Nicotiana tabacum HOM05D001027 ORTHO05D000844 5.1e-07 60.8 49 53.1
Oeu032425.1 Olea europaea HOM05D001027 ORTHO05D000844 5.1e-07 60.8 54 50.0
Peaxi162Scf00494g00102 Petunia axillaris HOM05D001027 ORTHO05D000844 5.1e-07 60.8 49 53.1
SalBow3G3075 Salvia bowleyana HOM05D001027 ORTHO05D000844 5.1e-07 60.8 49 55.1
Solyc07g040920.2 Solanum lycopersicum HOM05D001027 ORTHO05D000844 5.1e-07 60.8 49 53.1
HPP92_006477 Vanilla planifolia HOM05D001027 ORTHO05D000844 5.1e-07 60.8 50 50.0
MSTRG.26444 Avicennia marina HOM05D001027 ORTHO05D000844 6.7e-07 60.5 49 53.1
Cfa003055 Carpinus fangiana HOM05D001027 ORTHO05D000844 6.7e-07 60.5 49 53.1
Thhalv10011866m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 6.7e-07 60.5 67 46.3
Os01g0708000 Oryza sativa ssp. japonica HOM05D001027 ORTHO05D000844 6.7e-07 60.5 49 55.1
Pp3c2_40 Physcomitrium patens HOM05D011903 ORTHO05D002806 6.7e-07 60.5 61 45.9
Potri.018G066300 Populus trichocarpa HOM05D001027 ORTHO05D000844 6.7e-07 60.5 49 49.0
SalBow1G6362 Salvia bowleyana HOM05D001027 ORTHO05D000844 6.7e-07 60.5 49 53.1
Zm00001eb361200 Zea mays HOM05D001027 ORTHO05D000844 6.7e-07 60.5 49 53.1
BraA08t32377Z Brassica rapa HOM05D001027 ORTHO05D000844 8.8e-07 60.1 49 59.2
FvH4_1g07940 Fragaria vesca HOM05D001027 ORTHO05D000844 8.8e-07 60.1 49 51.0
FAN19G0620 Fragaria x ananassa HOM05D001027 ORTHO05D000844 8.8e-07 60.1 49 51.0
FAN23G0537 Fragaria x ananassa HOM05D001027 ORTHO05D000844 8.8e-07 60.1 49 51.0
FAN26G1071 Fragaria x ananassa HOM05D001027 ORTHO05D000844 8.8e-07 60.1 49 51.0
FAN26G3240 Fragaria x ananassa HOM05D001027 ORTHO05D000844 8.8e-07 60.1 49 51.0
FAN28G1607 Fragaria x ananassa HOM05D000250 ORTHO05D000625 8.8e-07 60.1 49 51.0
Oeu055350.2 Olea europaea HOM05D001027 ORTHO05D000844 8.8e-07 60.1 49 53.1
Prupe.7G205700 Prunus persica HOM05D001027 ORTHO05D000844 8.8e-07 60.1 49 51.0
RcHm_v2.0_Chr2g0093821 Rosa chinensis HOM05D001027 ORTHO05D000844 8.8e-07 60.1 49 51.0
SGA_v2.0_scaffold21G09416 Striga asiatica HOM05D001027 ORTHO05D000844 8.8e-07 60.1 49 53.1
SGA_v2.0_scaffold23G10037 Striga asiatica HOM05D006688 ORTHO05D008550 8.8e-07 60.1 49 53.1
Aa31LG1G16130 Aethionema arabicum HOM05D001027 ORTHO05D000844 1.1e-06 59.7 49 55.1
Ah.13g077930 Amaranthus hybridus HOM05D001027 ORTHO05D000844 1.1e-06 59.7 51 51.0
EL10Ac7g17237 Beta vulgaris HOM05D001027 ORTHO05D000844 1.1e-06 59.7 49 53.1
CiPaw.04G147800 Carya illinoinensis HOM05D001027 ORTHO05D000844 1.1e-06 59.7 74 43.2
DCAR_007638 Daucus carota HOM05D001027 ORTHO05D000844 1.1e-06 59.7 49 53.1
PGR142G1838 Punica granatum HOM05D001027 ORTHO05D000844 1.1e-06 59.7 50 52.0
SalBow6G3916 Salvia bowleyana HOM05D001027 ORTHO05D000844 1.1e-06 59.7 49 53.1
SMO147G0282 Selaginella moellendorffii HOM05D001027 ORTHO05D000844 1.1e-06 59.7 49 57.1
Hund17877 Selenicereus undatus HOM05D001027 ORTHO05D000844 1.1e-06 59.7 49 53.1
Actinidia39094 Actinidia chinensis HOM05D001027 ORTHO05D000844 1.5e-06 59.3 49 53.1
BolC3t21253H Brassica oleracea HOM05D001027 ORTHO05D000844 1.5e-06 59.3 49 59.2
Thhalv10010562m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 1.5e-06 59.3 73 45.2
Oeu051298.2 Olea europaea HOM05D001027 ORTHO05D000844 1.5e-06 59.3 74 40.5
Potri.006G147400 Populus trichocarpa HOM05D001027 ORTHO05D000844 1.5e-06 59.3 49 51.0
Sabra18G0058800 Salix brachista HOM05D001027 ORTHO05D000844 1.5e-06 59.3 49 51.0
SabraUnG0005200 Salix brachista HOM05D001027 ORTHO05D000844 1.5e-06 59.3 49 51.0
TAR624G1250 Trochodendron aralioides HOM05D001027 ORTHO05D000844 1.5e-06 59.3 49 51.0
unitig_32.g11756 Utricularia gibba HOM05D001027 ORTHO05D000844 1.5e-06 59.3 49 51.0
unitig_699.g19292 Utricularia gibba HOM05D001606 ORTHO05D002266 1.5e-06 59.3 49 53.1
Atru.chr7.1631 Acer truncatum HOM05D001027 ORTHO05D000844 2.0e-06 58.9 49 51.0
Actinidia39707 Actinidia chinensis HOM05D001027 ORTHO05D000844 2.0e-06 58.9 49 51.0
A08p03460 Brassica napus HOM05D001027 ORTHO05D000844 2.0e-06 58.9 49 57.1
CSS0030254 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 2.0e-06 58.9 49 51.0
CARHR280010 Cardamine hirsuta HOM05D001027 ORTHO05D000844 2.0e-06 58.9 49 55.1
Migut.L01522 Erythranthe guttata HOM05D001027 ORTHO05D000844 2.0e-06 58.9 49 53.1
Thhalv10004691m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 2.0e-06 58.9 49 55.1
Glyma.09G029300 Glycine max HOM05D001027 ORTHO05D000844 2.0e-06 58.9 49 57.1
Glyma.15G135100 Glycine max HOM05D001027 ORTHO05D000844 2.0e-06 58.9 49 57.1
Hma1.2p1_0672F.1_g200980 Hydrangea macrophylla HOM05D001027 ORTHO05D000844 2.0e-06 58.9 49 51.0
MD02G1083400 Malus domestica HOM05D001027 ORTHO05D000844 2.0e-06 58.9 49 51.0
MD15G1211100 Malus domestica HOM05D001027 ORTHO05D000844 2.0e-06 58.9 49 51.0
Medtr8g092810 Medicago truncatula HOM05D001027 ORTHO05D000844 2.0e-06 58.9 52 51.9
SalBow5G3758 Salvia bowleyana HOM05D003138 ORTHO05D003789 2.0e-06 58.9 49 49.0
Sp2g29070 Schrenkiella parvula HOM05D001027 ORTHO05D000844 2.0e-06 58.9 49 55.1
BcaC07g41377 Brassica carinata HOM05D001027 ORTHO05D000844 2.6e-06 58.5 49 53.1
BcaC09g49979 Brassica carinata HOM05D001027 ORTHO05D000844 2.6e-06 58.5 68 44.1
A01p24420 Brassica napus HOM05D001027 ORTHO05D000844 2.6e-06 58.5 68 44.1
C01p30440 Brassica napus HOM05D001027 ORTHO05D000844 2.6e-06 58.5 68 44.1
BolC1t02987H Brassica oleracea HOM05D001027 ORTHO05D000844 2.6e-06 58.5 68 44.1
BraA01t02355Z Brassica rapa HOM05D001027 ORTHO05D000844 2.6e-06 58.5 68 44.1
Carub.0008s2689 Capsella rubella HOM05D001027 ORTHO05D000844 2.6e-06 58.5 49 53.1
CARHR158930 Cardamine hirsuta HOM05D001027 ORTHO05D000844 2.6e-06 58.5 49 53.1
Migut.L01532 Erythranthe guttata HOM05D001027 ORTHO05D000844 2.6e-06 58.5 49 51.0
HanXRQChr10g0319501 Helianthus annuus HOM05D001027 ORTHO05D000844 2.6e-06 58.5 49 51.0
Medtr2g031870 Medicago truncatula HOM05D001027 ORTHO05D000844 2.6e-06 58.5 49 55.1
Sc16g0002850 Simmondsia chinensis HOM05D001027 ORTHO05D000844 2.6e-06 58.5 49 53.1
TWI74G1583 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 2.6e-06 58.5 49 53.1
Ah.06g186990 Amaranthus hybridus HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 46.9
EL10Ac8g19173 Beta vulgaris HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 51.0
BcaNung05862 Brassica carinata HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 55.1
BcaNung05864 Brassica carinata HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 55.1
A06p32840 Brassica napus HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 55.1
C03p59630 Brassica napus HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 55.1
BolC3t18225H Brassica oleracea HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 55.1
BraA06t26216Z Brassica rapa HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 55.1
Carub.0005s1621 Capsella rubella HOM05D001027 ORTHO05D000844 3.3e-06 58.2 73 43.8
Ciclev10009173m.g Citrus clementina HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 51.0
Lsat_1_v5_gn_5_143181 Lactuca sativa HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 51.0
Nitab4.5_0010836g0030 Nicotiana tabacum HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 53.1
Os12g0613300 Oryza sativa ssp. japonica HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 53.1
PSO013G0344 Papaver somniferum HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 53.1
Rhsim05G0016500 Rhododendron simsii HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 51.0
Solyc02g064630.4 Solanum lycopersicum HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 53.1
Sopen02g014730 Solanum pennellii HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 53.1
PGSC0003DMG402003328 Solanum tuberosum HOM05D001027 ORTHO05D000844 3.3e-06 58.2 49 53.1
Aqoxy7G01156 Aquilegia oxysepala HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 51.0
BcaB02g11114 Brassica carinata HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 57.1
BcaC04g23236 Brassica carinata HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 55.1
BcaNung06345 Brassica carinata HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 57.1
A09p09260 Brassica napus HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 55.1
C05p34180 Brassica napus HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 57.1
C09p10820 Brassica napus HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 55.1
BolC5t32152H Brassica oleracea HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 57.1
BolC9t53977H Brassica oleracea HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 55.1
BraA05t20948Z Brassica rapa HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 57.1
BraA09t36579Z Brassica rapa HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 55.1
CDE06G2372 Ceratophyllum demersum HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 51.0
COL.COLO4_11583 Corchorus olitorius HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 53.1
Duzib187G1596 Durio zibethinus HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 53.1
Duzib264G0181 Durio zibethinus HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 55.1
Migut.D00953 Erythranthe guttata HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 55.1
Gohir.A02G151200 Gossypium hirsutum HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 53.1
Gohir.A11G214400 Gossypium hirsutum HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 53.1
Gohir.D03G029100 Gossypium hirsutum HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 53.1
Gohir.D11G209000 Gossypium hirsutum HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 53.1
Gorai.007G224200 Gossypium raimondii HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 53.1
Medtr0095s0040 Medicago truncatula HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 55.1
Medtr8g494240 Medicago truncatula HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 55.1
Nitab4.5_0000142g0120 Nicotiana tabacum HOM05D001027 ORTHO05D000844 4.4e-06 57.8 77 41.6
PSO063G4045 Papaver somniferum HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 46.9
PSO832G4508 Papaver somniferum HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 46.9
Pp3c5_29220 Physcomitrium patens HOM05D011903 ORTHO05D002806 4.4e-06 57.8 54 48.1
Pp3s241_30 Physcomitrium patens HOM05D011903 ORTHO05D002806 4.4e-06 57.8 54 48.1
Thecc.01G073300 Theobroma cacao HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 53.1
GSVIVG01015170001 Vitis vinifera HOM05D001027 ORTHO05D000844 4.4e-06 57.8 49 51.0
Ah.06g187000 Amaranthus hybridus HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 46.9
ATR0789G050 Amborella trichopoda HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 51.0
AL5G29860 Arabidopsis lyrata HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 51.0
arahy.Tifrunner.gnm1.ann1.1Y2NXV Arachis hypogaea HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 55.1
arahy.Tifrunner.gnm1.ann1.4L6GWX Arachis hypogaea HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 55.1
BcaB03g15012 Brassica carinata HOM05D000250 ORTHO05D000625 5.7e-06 57.4 49 49.0
BcaC07g41376 Brassica carinata HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 53.1
BcaC08g46715 Brassica carinata HOM05D000250 ORTHO05D000625 5.7e-06 57.4 49 49.0
C06p47030 Brassica napus HOM05D000250 ORTHO05D000625 5.7e-06 57.4 49 49.0
C08p43830 Brassica napus HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 53.1
BolC6t39743H Brassica oleracea HOM05D000250 ORTHO05D000625 5.7e-06 57.4 49 49.0
BolC8t51932H Brassica oleracea HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 53.1
CAN.G775.7 Capsicum annuum HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 53.1
AUR62038504 Chenopodium quinoa HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 53.1
AUR62040489 Chenopodium quinoa HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 53.1
AUR62040490 Chenopodium quinoa HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 53.1
Ca_00922_v3 Cicer arietinum L. HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 55.1
Lalb_Chr15g0088961 Lupinus albus HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 55.1
Manes.16G099700 Manihot esculenta HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 49.0
Oeu013324.1 Olea europaea HOM05D001027 ORTHO05D000844 5.7e-06 57.4 49 51.0
MSTRG.23666 Avicennia marina HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 51.0
BcaB05g23168 Brassica carinata HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 51.0
BcaC07g38868 Brassica carinata HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 51.0
BcaNung05860 Brassica carinata HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 53.1
A07p38880 Brassica napus HOM05D000250 ORTHO05D000625 7.4e-06 57.0 49 49.0
A08p30860 Brassica napus HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 51.0
C08p18060 Brassica napus HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 51.0
BolC8t49438H Brassica oleracea HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 51.0
BraA08t35017Z Brassica rapa HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 51.0
Cc07_g07150 Coffea canephora HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 49.0
Nitab4.5_0000036g0090 Nicotiana tabacum HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 51.0
Peaxi162Scf00449g00319 Petunia axillaris HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 53.1
Pp3s76_20 Physcomitrium patens HOM05D011903 ORTHO05D002806 7.4e-06 57.0 61 42.6
Psat1g164560 Pisum sativum HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 55.1
Psat5g289920 Pisum sativum HOM05D001027 ORTHO05D000844 7.4e-06 57.0 52 50.0
Potri.014G004900 Populus trichocarpa HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 55.1
Rhsim10G0099200 Rhododendron simsii HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 53.1
Sc18g0002280 Simmondsia chinensis HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 51.0
TPR.G8019 Trifolium pratense HOM05D001027 ORTHO05D000844 7.4e-06 57.0 49 55.1
A05p20400 Brassica napus HOM05D001027 ORTHO05D000844 9.7e-06 56.6 49 57.1
A09p60340 Brassica napus HOM05D001027 ORTHO05D000844 9.7e-06 56.6 49 53.1
BraA09t41406Z Brassica rapa HOM05D001027 ORTHO05D000844 9.7e-06 56.6 49 53.1
Cfa003557 Carpinus fangiana HOM05D001027 ORTHO05D000844 9.7e-06 56.6 49 53.1
Cc04_g01670 Coffea canephora HOM05D001027 ORTHO05D000844 9.7e-06 56.6 49 49.0
Haze_15991 Corylus avellana HOM05D001027 ORTHO05D000844 9.7e-06 56.6 49 53.1
DCAR_010506 Daucus carota HOM05D001027 ORTHO05D000844 9.7e-06 56.6 49 51.0
Lalb_Chr20g0120231 Lupinus albus HOM05D001027 ORTHO05D000844 9.7e-06 56.6 49 55.1
Peaxi162Scf00038g01737 Petunia axillaris HOM05D001027 ORTHO05D000844 9.7e-06 56.6 49 46.9
Peaxi162Scf00207g01353 Petunia axillaris HOM05D001027 ORTHO05D000844 9.7e-06 56.6 49 49.0
Pp3c19_23130 Physcomitrium patens HOM05D011903 ORTHO05D002806 9.7e-06 56.6 54 48.1
QL02p062075 Quercus lobata HOM05D001027 ORTHO05D000844 9.7e-06 56.6 81 40.7
PGSC0003DMG400002489 Solanum tuberosum HOM05D001027 ORTHO05D000844 9.7e-06 56.6 49 51.0


User provided reference genes

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