Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.0e-200 702.2 354 100.0
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 4.9e-122 441.8 328 68.3
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.4e-121 439.5 322 68.6
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 7.1e-121 438.0 331 67.7
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 3.5e-120 435.6 320 69.4
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.5e-118 430.3 304 70.4
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 2.0e-115 419.9 327 65.4
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 7.6e-115 417.9 349 62.2
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 6.4e-114 414.8 321 65.4
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 8.4e-114 414.5 325 63.7
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.4e-113 413.7 313 65.8
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.9e-113 413.3 313 65.8
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.9e-113 413.3 325 64.3
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.2e-113 412.5 322 66.1
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 3.2e-113 412.5 321 64.8
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 5.5e-113 411.8 314 66.9
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 5.5e-113 411.8 307 67.1
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 7.1e-113 411.4 332 63.3
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 9.3e-113 411.0 332 63.3
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.2e-112 410.6 311 65.6
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 1.6e-112 410.2 321 65.1
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.6e-112 410.2 313 65.5
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.6e-112 410.2 327 63.9
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 2.1e-112 409.8 313 66.1
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 2.7e-112 409.5 346 61.6
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 2.7e-112 409.5 315 64.8
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 3.5e-112 409.1 347 62.2
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 4.6e-112 408.7 339 62.2
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 6.0e-112 408.3 329 64.4
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 7.9e-112 407.9 325 64.3
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.9e-112 407.9 322 64.3
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.9e-112 407.9 322 64.3
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.0e-111 407.5 314 65.0
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 1.0e-111 407.5 324 63.6
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.3e-111 407.1 318 65.7
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 1.3e-111 407.1 342 62.6
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 1.3e-111 407.1 307 67.8
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.3e-111 407.1 314 65.6
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.8e-111 406.8 322 64.3
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.8e-111 406.8 313 67.1
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 2.3e-111 406.4 313 66.5
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 2.3e-111 406.4 318 65.1
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 2.3e-111 406.4 345 61.7
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 2.3e-111 406.4 327 63.6
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 3.0e-111 406.0 322 63.7
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 3.0e-111 406.0 348 61.5
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 3.0e-111 406.0 337 63.8
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 3.9e-111 405.6 315 64.4
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 5.1e-111 405.2 312 65.1
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 5.1e-111 405.2 314 65.3
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 5.1e-111 405.2 345 61.7
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 5.1e-111 405.2 313 65.2
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 5.1e-111 405.2 338 63.3
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 5.1e-111 405.2 315 66.0
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 5.1e-111 405.2 335 62.1
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 6.7e-111 404.8 339 62.2
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.7e-111 404.8 324 64.5
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 6.7e-111 404.8 344 61.0
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 8.7e-111 404.4 322 64.3
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 8.7e-111 404.4 312 65.4
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 8.7e-111 404.4 315 65.4
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 1.1e-110 404.1 316 64.6
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.1e-110 404.1 316 64.9
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.5e-110 403.7 331 62.5
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.9e-110 403.3 314 65.3
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.9e-110 403.3 309 66.3
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.5e-110 402.9 341 61.3
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 3.3e-110 402.5 309 64.7
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.3e-110 402.5 317 65.3
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 3.3e-110 402.5 322 63.4
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 3.3e-110 402.5 321 63.6
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 3.3e-110 402.5 329 63.5
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 4.3e-110 402.1 323 63.8
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.3e-110 402.1 323 63.8
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 4.3e-110 402.1 324 62.0
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 4.3e-110 402.1 349 60.7
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 5.6e-110 401.7 314 64.6
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 5.6e-110 401.7 318 64.5
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 5.6e-110 401.7 314 65.6
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 7.4e-110 401.4 325 65.2
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 7.4e-110 401.4 321 63.2
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 9.6e-110 401.0 307 65.8
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 9.6e-110 401.0 301 66.4
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.6e-109 400.2 321 63.2
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 2.1e-109 399.8 312 65.4
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 2.1e-109 399.8 314 64.0
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 2.1e-109 399.8 307 65.5
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.1e-109 399.8 309 65.0
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 2.8e-109 399.4 362 59.1
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 2.8e-109 399.4 310 65.2
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.7e-109 399.1 318 64.5
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 4.8e-109 398.7 321 63.2
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.8e-109 398.7 333 62.5
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 6.2e-109 398.3 322 63.7
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 6.2e-109 398.3 322 63.7
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 6.2e-109 398.3 288 68.1
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 8.2e-109 397.9 316 64.6
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 8.2e-109 397.9 309 65.4
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.1e-108 397.5 322 63.4
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.1e-108 397.5 322 63.4
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.4e-108 397.1 307 65.8
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 1.4e-108 397.1 320 64.1
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.4e-108 397.1 350 60.6
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.8e-108 396.7 321 62.6
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.8e-108 396.7 314 65.3
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.8e-108 396.7 348 59.8
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.4e-108 396.4 312 64.1
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 3.1e-108 396.0 322 63.7
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 3.1e-108 396.0 322 63.0
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.0e-108 395.6 317 64.0
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 4.0e-108 395.6 328 63.1
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 5.3e-108 395.2 322 63.4
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.3e-108 395.2 314 63.4
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 6.9e-108 394.8 322 63.7
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 6.9e-108 394.8 322 63.0
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 6.9e-108 394.8 322 63.4
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 6.9e-108 394.8 322 63.7
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 6.9e-108 394.8 322 63.4
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 6.9e-108 394.8 327 62.4
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 6.9e-108 394.8 322 63.4
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 9.0e-108 394.4 322 62.7
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 9.0e-108 394.4 323 61.9
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.2e-107 394.0 320 63.8
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.2e-107 394.0 320 63.8
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.2e-107 394.0 321 62.9
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.5e-107 393.7 322 63.0
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 2.0e-107 393.3 313 63.9
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.8e-107 391.7 300 65.7
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.0e-106 391.0 325 62.8
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.5e-105 386.3 320 62.2
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.5e-105 386.3 320 62.2
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 2.5e-105 386.3 299 65.9
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 4.2e-105 385.6 314 61.8
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 4.2e-105 385.6 369 56.9
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 9.3e-105 384.4 298 65.4
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.2e-104 384.0 307 63.2
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.1e-104 383.3 301 64.8
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 6.0e-104 381.7 309 63.8
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.3e-103 380.6 299 65.6
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 5.1e-103 378.6 312 63.8
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.1e-102 377.5 283 67.5
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 2.5e-102 376.3 304 62.5
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.5e-102 376.3 283 66.8
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.6e-101 373.6 317 62.1
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.2e-101 373.2 299 63.2
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.7e-101 372.5 334 57.8
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.5e-99 367.1 289 64.0
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 4.5e-99 365.5 410 50.2
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 5.0e-98 362.1 322 59.6
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.6e-96 357.1 321 58.9
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 6.1e-88 328.6 242 69.8
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 2.0e-83 313.5 250 65.2
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 3.2e-81 306.2 248 63.3
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.2e-80 304.3 232 65.1
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 3.7e-69 266.2 331 47.4
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 2.5e-57 226.9 164 70.1
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 2.3e-55 220.3 292 45.9
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 7.5e-54 215.3 143 72.0
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 5.8e-38 162.5 134 61.2
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 2.7e-35 153.7 110 67.3
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 2.3e-34 150.6 356 31.2
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 4.4e-30 136.3 112 60.7
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 2.4e-28 130.6 170 45.9
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 2.4e-28 130.6 170 45.9
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 2.4e-28 130.6 170 45.9
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.2e-16 91.7 102 52.0
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 4.7e-16 89.7 101 51.5
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 4.7e-16 89.7 101 51.5
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 6.2e-16 89.4 100 51.0
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 3.1e-15 87.0 101 50.5
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 3.4e-14 83.6 105 47.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 8.4e-13 79.0 49 75.5
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.1e-12 78.6 101 45.5
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.6e-11 74.7 100 45.0
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 2.1e-11 74.3 64 60.9
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 3.9e-10 70.1 61 57.4
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 5.1e-10 69.7 67 59.7


User provided reference genes

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