Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.7e-219 765.8 410 100.0
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 3.2e-165 585.5 374 81.3
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.5e-162 575.9 373 81.0
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.1e-160 570.5 372 80.1
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.8e-160 569.7 362 82.0
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.8e-160 569.7 362 82.0
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 7.6e-159 564.3 366 79.8
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 1.2e-156 557.0 346 81.8
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.8e-155 553.1 344 81.7
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 7.4e-154 547.7 374 77.3
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.1e-153 546.2 335 83.9
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 6.2e-153 544.7 373 77.7
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 8.2e-153 544.3 362 79.0
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.4e-152 542.7 383 75.5
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 4.0e-152 542.0 379 76.3
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 4.0e-152 542.0 363 74.9
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 2.0e-151 539.7 363 74.7
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 2.6e-151 539.3 336 82.7
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 2.6e-151 539.3 336 83.0
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 5.8e-151 538.1 361 78.1
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 6.5e-150 534.6 350 80.6
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 6.5e-150 534.6 354 78.2
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 8.4e-150 534.3 335 81.8
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.1e-149 533.9 368 78.5
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.4e-149 533.5 359 79.1
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.4e-149 533.5 340 81.5
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 9.3e-149 530.8 330 83.0
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 4.6e-148 528.5 369 73.7
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 7.9e-148 527.7 359 78.0
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.0e-147 527.3 382 74.9
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 1.8e-147 526.6 331 81.3
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 2.3e-147 526.2 338 79.3
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 2.3e-147 526.2 346 80.3
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 2.3e-147 526.2 356 76.4
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 3.0e-147 525.8 373 73.7
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 3.0e-147 525.8 346 78.9
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.1e-147 525.0 341 78.3
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 6.7e-147 524.6 359 78.0
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 6.7e-147 524.6 334 80.5
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 8.7e-147 524.2 363 73.3
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 8.7e-147 524.2 362 76.2
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.1e-146 523.9 364 76.1
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.1e-146 523.9 362 74.6
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.5e-146 523.5 362 74.9
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.9e-146 523.1 355 75.8
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.9e-146 523.1 363 75.5
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.9e-146 523.1 362 74.6
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 2.5e-146 522.7 331 81.0
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.5e-146 522.7 358 75.1
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 2.5e-146 522.7 362 74.3
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 3.3e-146 522.3 332 80.4
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 3.3e-146 522.3 351 78.1
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.3e-146 522.3 367 74.9
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.3e-146 521.9 335 80.0
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 5.7e-146 521.5 332 80.4
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.3e-145 520.4 335 79.7
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.6e-145 520.0 335 79.7
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.6e-145 520.0 362 74.0
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 1.6e-145 520.0 332 81.0
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 2.2e-145 519.6 350 75.7
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 2.8e-145 519.2 355 76.1
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 3.7e-145 518.8 333 80.5
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 4.8e-145 518.5 380 72.4
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.1e-144 517.3 369 73.7
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.1e-144 517.3 332 79.5
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 1.4e-144 516.9 370 75.1
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.8e-144 516.5 367 74.7
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.8e-144 516.5 369 73.7
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.4e-144 516.2 338 77.8
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.4e-144 516.2 369 72.4
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 3.1e-144 515.8 337 78.0
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 4.1e-144 515.4 332 79.8
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.1e-144 515.4 337 79.2
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 6.9e-144 514.6 355 75.8
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 9.0e-144 514.2 361 75.9
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 9.0e-144 514.2 333 79.3
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 9.0e-144 514.2 356 74.4
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 1.2e-143 513.8 366 75.1
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 1.5e-143 513.5 366 74.0
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.0e-143 513.1 357 73.7
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 2.6e-143 512.7 359 74.9
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 7.7e-143 511.1 338 76.3
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 7.7e-143 511.1 333 78.7
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.0e-142 510.8 372 74.5
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.0e-142 510.8 393 69.5
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.7e-142 510.0 352 73.9
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 2.2e-142 509.6 357 74.2
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 2.9e-142 509.2 362 74.0
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.9e-142 509.2 368 74.5
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 2.9e-142 509.2 347 75.5
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 8.5e-142 507.7 384 69.3
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 1.1e-141 507.3 334 78.1
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.4e-141 506.9 330 77.9
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.4e-141 506.9 330 78.5
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.2e-141 505.4 358 74.6
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 4.2e-141 505.4 379 72.0
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 4.2e-141 505.4 367 73.3
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 5.5e-141 505.0 348 75.6
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.5e-141 505.0 368 73.6
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 9.4e-141 504.2 374 71.9
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 9.4e-141 504.2 374 71.9
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.2e-140 503.8 330 77.6
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.2e-140 503.8 375 71.5
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.2e-140 503.8 371 72.5
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.2e-140 503.8 378 70.9
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.6e-140 503.4 371 72.2
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 1.6e-140 503.4 378 70.9
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.6e-140 503.4 371 72.2
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.6e-140 503.4 330 78.5
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 2.1e-140 503.1 330 78.2
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 2.1e-140 503.1 371 72.5
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.7e-140 502.7 378 71.4
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 3.6e-140 502.3 330 77.6
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 6.1e-140 501.5 335 77.0
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.0e-139 500.7 376 71.0
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.8e-139 500.0 332 77.4
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.8e-139 500.0 332 77.4
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.8e-139 500.0 352 74.7
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 3.9e-139 498.8 330 77.0
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 6.7e-139 498.0 359 70.8
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 6.7e-139 498.0 321 80.1
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 8.8e-139 497.7 370 72.2
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 8.8e-139 497.7 332 77.1
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 8.8e-139 497.7 370 72.2
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 8.8e-139 497.7 300 80.3
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.5e-138 496.1 373 71.0
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.5e-138 496.1 373 71.0
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 4.3e-138 495.4 325 79.1
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 9.7e-138 494.2 423 64.3
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 9.7e-138 494.2 308 80.2
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 2.2e-137 493.0 302 81.5
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.8e-137 491.9 299 82.9
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 8.2e-137 491.1 428 63.6
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.2e-135 487.3 318 81.8
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 2.6e-135 486.1 357 72.3
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.6e-135 486.1 350 72.0
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 7.7e-135 484.6 330 73.6
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 6.5e-134 481.5 285 84.2
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 1.1e-133 480.7 330 73.0
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.5e-133 479.6 345 70.7
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 3.6e-132 475.7 322 74.8
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 3.6e-132 475.7 339 73.5
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 8.8e-131 471.1 285 82.8
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.1e-130 470.7 366 68.3
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 8.2e-129 464.5 318 76.4
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.2e-127 460.7 371 67.9
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 3.5e-127 459.1 377 67.1
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 9.4e-117 424.5 313 67.7
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 4.5e-111 405.6 329 64.4
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 5.4e-104 382.1 291 66.0
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 6.6e-102 375.2 250 77.6
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 8.0e-100 368.2 264 73.9
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 1.1e-96 357.8 274 72.6
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 3.3e-93 346.3 238 76.1
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 2.3e-75 287.0 201 76.1
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.9e-72 277.3 279 59.1
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 7.1e-72 275.4 314 50.3
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 5.8e-66 255.8 369 46.1
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 6.0e-63 245.7 175 73.1
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.2e-50 204.9 112 86.6
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 2.0e-42 177.6 113 77.9
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 3.7e-36 156.8 178 55.1
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 3.7e-36 156.8 178 55.1
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 3.7e-36 156.8 178 55.1
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 5.9e-34 149.4 325 32.6
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.9e-32 144.4 101 69.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.2e-31 141.7 99 70.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 1.2e-31 141.7 99 70.7
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 1.6e-31 141.4 98 70.4
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 7.9e-31 139.0 99 69.7
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 6.7e-30 136.0 103 66.0
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 7.4e-29 132.5 104 62.5
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.1e-27 128.6 103 62.1
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 6.9e-19 99.4 64 75.0
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 2.7e-15 87.4 73 69.9
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.1e-13 82.0 49 79.6
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 7.4e-13 79.3 64 68.8
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 4.7e-07 60.1 35 71.4
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 5.2e-06 56.6 35 68.6


User provided reference genes

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