Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI15_g14054_MAGBIO Magnolia biondii HOM05D002313 ORTHO05D013935 9.3e-53 209.9 104 100.0
MBI15_g40546_MAGBIO Magnolia biondii HOM05D002313 ORTHO05D013935 2.2e-38 162.2 83 95.2
MBI07_g42015_MAGBIO Magnolia biondii HOM05D002313 ORTHO05D003747 9.0e-16 87.0 75 64.0
MBI16_g11670_MAGBIO Magnolia biondii HOM05D002313 ORTHO05D013935 1.0e-14 83.6 74 62.2
Nn3g16203 Nelumbo nucifera HOM05D002313 ORTHO05D003747 1.0e-14 83.6 76 60.5
PGR004G0406 Punica granatum HOM05D002313 ORTHO05D003747 1.3e-14 83.2 75 61.3
Cc04_g05640 Coffea canephora HOM05D002313 ORTHO05D003747 2.2e-14 82.4 76 59.2
Haze_07080 Corylus avellana HOM05D002313 ORTHO05D003747 2.2e-14 82.4 77 57.1
TAR622G1219 Trochodendron aralioides HOM05D002313 ORTHO05D003747 2.2e-14 82.4 76 59.2
MBI11_g17277_MAGBIO Magnolia biondii HOM05D002313 ORTHO05D003747 3.8e-14 81.6 78 56.4
PSO017G3625 Papaver somniferum HOM05D002313 ORTHO05D003747 6.5e-14 80.9 76 57.9
PSO478G1808 Papaver somniferum HOM05D002313 ORTHO05D003747 6.5e-14 80.9 76 57.9
QL10p000004 Quercus lobata HOM05D002313 ORTHO05D003747 6.5e-14 80.9 76 57.9
QL10p000189 Quercus lobata HOM05D002313 ORTHO05D003747 6.5e-14 80.9 76 57.9
Thecc.03G143000 Theobroma cacao HOM05D002313 ORTHO05D003747 8.5e-14 80.5 76 56.6
Aqoxy3G01983 Aquilegia oxysepala HOM05D002313 ORTHO05D003747 1.1e-13 80.1 76 57.9
Cpa.g.sc13.196 Carica papaya HOM05D002313 ORTHO05D003747 1.1e-13 80.1 80 55.0
MSTRG.9381 Avicennia marina HOM05D002313 ORTHO05D003747 1.4e-13 79.7 76 57.9
CiPaw.11G000500 Carya illinoinensis HOM05D002313 ORTHO05D003747 1.9e-13 79.3 76 56.6
Ciclev10030606m.g Citrus clementina HOM05D002313 ORTHO05D003747 1.9e-13 79.3 76 56.6
Ca_17048_v3 Cicer arietinum L. HOM05D002313 ORTHO05D003747 2.5e-13 79.0 78 53.8
Gohir.A03G055400 Gossypium hirsutum HOM05D002313 ORTHO05D003747 2.5e-13 79.0 76 56.6
Gohir.D03G111200 Gossypium hirsutum HOM05D002313 ORTHO05D003747 2.5e-13 79.0 76 56.6
TWI14G0055 Tripterygium wilfordii HOM05D002313 ORTHO05D003747 2.5e-13 79.0 75 57.3
ClCG06G018430 Citrullus lanatus HOM05D002313 ORTHO05D003747 3.2e-13 78.6 76 56.6
Eucgr.K02185 Eucalyptus grandis HOM05D002313 ORTHO05D003747 3.2e-13 78.6 76 56.6
Psat0s836g0040 Pisum sativum HOM05D002313 ORTHO05D003747 3.2e-13 78.6 76 53.9
Potri.015G109300 Populus trichocarpa HOM05D002313 ORTHO05D003747 3.2e-13 78.6 75 57.3
TWI23G0679 Tripterygium wilfordii HOM05D002313 ORTHO05D003747 3.2e-13 78.6 75 57.3
Dinv23243 Davidia involucrata HOM05D002313 ORTHO05D003747 5.5e-13 77.8 75 56.0
Gorai.003G117700 Gossypium raimondii HOM05D002313 ORTHO05D003747 5.5e-13 77.8 76 55.3
Medtr3g098420 Medicago truncatula HOM05D002313 ORTHO05D003747 5.5e-13 77.8 78 52.6
Potri.012G111200 Populus trichocarpa HOM05D002313 ORTHO05D003747 5.5e-13 77.8 75 56.0
SEGI_32934 Sequoiadendron giganteum HOM05D002313 ORTHO05D003747 5.5e-13 77.8 75 56.0
TPR.G16949 Trifolium pratense HOM05D002313 ORTHO05D003747 5.5e-13 77.8 78 52.6
TWI39G1002 Tripterygium wilfordii HOM05D002313 ORTHO05D003747 5.5e-13 77.8 75 57.3
FvH4_5g09960 Fragaria vesca HOM05D002313 ORTHO05D003747 7.2e-13 77.4 82 53.7
FAN04G2635 Fragaria x ananassa HOM05D002313 ORTHO05D003747 7.2e-13 77.4 82 53.7
FAN18G4031 Fragaria x ananassa HOM05D002313 ORTHO05D003747 7.2e-13 77.4 82 53.7
Sabra15G0131500 Salix brachista HOM05D002313 ORTHO05D003747 7.2e-13 77.4 75 56.0
SGA_v2.0_scaffold74G24624 Striga asiatica HOM05D002313 ORTHO05D003747 7.2e-13 77.4 76 55.3
arahy.Tifrunner.gnm1.ann1.GTN7VM Arachis hypogaea HOM05D002313 ORTHO05D003747 9.4e-13 77.0 92 48.9
MSTRG.4649 Avicennia marina HOM05D002313 ORTHO05D003747 9.4e-13 77.0 76 55.3
Gohir.D12G197100 Gossypium hirsutum HOM05D002313 ORTHO05D003747 9.4e-13 77.0 76 53.9
Gorai.008G211700 Gossypium raimondii HOM05D002313 ORTHO05D003747 9.4e-13 77.0 76 53.9
Duzib084G0519 Durio zibethinus HOM05D002313 ORTHO05D003747 1.2e-12 76.6 76 53.9
Lj9C488T17 Lonicera japonica HOM05D002313 ORTHO05D003747 1.2e-12 76.6 75 54.7
Sed0026881 Sechium edule HOM05D002313 ORTHO05D003747 1.2e-12 76.6 76 55.3
CDE05G1195 Ceratophyllum demersum HOM05D002313 ORTHO05D003747 1.6e-12 76.3 75 54.7
Gohir.A12G194700 Gossypium hirsutum HOM05D002313 ORTHO05D003747 1.6e-12 76.3 76 53.9
arahy.Tifrunner.gnm1.ann1.K1HEP6 Arachis hypogaea HOM05D002313 ORTHO05D003747 2.1e-12 75.9 91 50.5
CiPaw.12G000200 Carya illinoinensis HOM05D002313 ORTHO05D003747 2.1e-12 75.9 76 53.9
Glyma.06G162500 Glycine max HOM05D002313 ORTHO05D003747 2.1e-12 75.9 76 52.6
Nitab4.5_0002540g0070 Nicotiana tabacum HOM05D002313 ORTHO05D003747 2.1e-12 75.9 74 54.1
RcHm_v2.0_Chr7g0188331 Rosa chinensis HOM05D002313 ORTHO05D003747 2.1e-12 75.9 82 52.4
SGA_v2.0_scaffold40G15690 Striga asiatica HOM05D002313 ORTHO05D003747 2.1e-12 75.9 75 54.7
CSS0013451 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D003747 2.7e-12 75.5 75 53.3
Nitab4.5_0004781g0060 Nicotiana tabacum HOM05D002313 ORTHO05D003747 2.7e-12 75.5 74 52.7
SalBow1G2272 Salvia bowleyana HOM05D002313 ORTHO05D003747 2.7e-12 75.5 75 54.7
CAN.G1008.40 Capsicum annuum HOM05D002313 ORTHO05D003747 3.6e-12 75.1 74 54.1
MELO3C026154.2 Cucumis melo HOM05D002313 ORTHO05D003747 3.6e-12 75.1 76 55.3
CsaV3_1G000020 Cucumis sativus L. HOM05D002313 ORTHO05D003747 3.6e-12 75.1 76 55.3
Duzib205G0651 Durio zibethinus HOM05D002313 ORTHO05D003747 3.6e-12 75.1 77 50.6
Gohir.A11G039100 Gossypium hirsutum HOM05D002313 ORTHO05D003747 3.6e-12 75.1 77 55.8
Gohir.D11G042400 Gossypium hirsutum HOM05D002313 ORTHO05D003747 3.6e-12 75.1 77 55.8
Sed0025222 Sechium edule HOM05D002313 ORTHO05D003747 3.6e-12 75.1 76 53.9
Dinv13697 Davidia involucrata HOM05D002313 ORTHO05D003747 4.6e-12 74.7 44 75.0
Glyma.04G203000 Glycine max HOM05D002313 ORTHO05D003747 4.6e-12 74.7 76 51.3
Lalb_Chr08g0237631 Lupinus albus HOM05D002313 ORTHO05D003747 4.6e-12 74.7 75 52.0
Peaxi162Scf00835g00334 Petunia axillaris HOM05D002313 ORTHO05D003747 4.6e-12 74.7 75 53.3
vmacro19101 Vaccinium macrocarpon HOM05D002313 ORTHO05D003747 4.6e-12 74.7 75 50.7
GSVIVG01005677001 Vitis vinifera HOM05D002313 ORTHO05D003747 4.6e-12 74.7 75 54.7
FAN08G2499 Fragaria x ananassa HOM05D002313 ORTHO05D003747 6.1e-12 74.3 82 51.2
Nitab4.5_0000976g0220 Nicotiana tabacum HOM05D002313 ORTHO05D003747 6.1e-12 74.3 74 52.7
Nitab4.5_0011883g0030 Nicotiana tabacum HOM05D002313 ORTHO05D003747 6.1e-12 74.3 74 52.7
Glyma.05G199100 Glycine max HOM05D002313 ORTHO05D003747 7.9e-12 73.9 76 51.3
Glyma.08G006400 Glycine max HOM05D002313 ORTHO05D003747 7.9e-12 73.9 76 51.3
PGSC0003DMG400014229 Solanum tuberosum HOM05D002313 ORTHO05D003747 7.9e-12 73.9 74 52.7
Atru.chr6.1949 Acer truncatum HOM05D002313 ORTHO05D003747 1.0e-11 73.6 76 52.6
Gorai.007G045600 Gossypium raimondii HOM05D002313 ORTHO05D003747 1.0e-11 73.6 77 54.5
Hma1.2p1_1333F.1_g276220 Hydrangea macrophylla HOM05D002313 ORTHO05D003747 1.4e-11 73.2 75 52.0
Lalb_Chr11g0068981 Lupinus albus HOM05D002313 ORTHO05D003747 1.4e-11 73.2 75 52.0
Lalb_Chr11g0069041 Lupinus albus HOM05D002313 ORTHO05D003747 1.4e-11 73.2 75 52.0
Solyc03g118020.3 Solanum lycopersicum HOM05D002313 ORTHO05D003747 1.4e-11 73.2 74 51.4
Sopen03g036920 Solanum pennellii HOM05D002313 ORTHO05D003747 1.4e-11 73.2 74 51.4
Aqoxy5G02974 Aquilegia oxysepala HOM05D002313 ORTHO05D003747 1.8e-11 72.8 76 52.6
arahy.Tifrunner.gnm1.ann1.039TZW Arachis hypogaea HOM05D002313 ORTHO05D003747 2.3e-11 72.4 75 52.0
arahy.Tifrunner.gnm1.ann1.W6YZV5 Arachis hypogaea HOM05D002313 ORTHO05D003747 2.3e-11 72.4 75 52.0
Phvul.002G280100 Phaseolus vulgaris HOM05D002313 ORTHO05D003747 2.3e-11 72.4 76 50.0
Actinidia25503 Actinidia chinensis HOM05D002313 ORTHO05D003747 3.0e-11 72.0 75 50.7
Lalb_Chr23g0272841 Lupinus albus HOM05D002313 ORTHO05D003747 3.0e-11 72.0 75 50.7
Sabra12G0081000 Salix brachista HOM05D002313 ORTHO05D003747 3.0e-11 72.0 78 52.6
Sopen03g036910 Solanum pennellii HOM05D002313 ORTHO05D003747 3.0e-11 72.0 74 51.4
Actinidia08918 Actinidia chinensis HOM05D002313 ORTHO05D003747 3.9e-11 71.6 75 50.7
COL.COLO4_37280 Corchorus olitorius HOM05D002313 ORTHO05D003747 3.9e-11 71.6 44 75.0
vmacro16769 Vaccinium macrocarpon HOM05D002313 ORTHO05D003747 3.9e-11 71.6 75 53.3
vmacro16771 Vaccinium macrocarpon HOM05D002313 ORTHO05D003747 3.9e-11 71.6 75 53.3
Phvul.009G159000 Phaseolus vulgaris HOM05D002313 ORTHO05D003747 5.1e-11 71.2 76 50.0
VMungo0251G2525 Vigna mungo HOM05D002313 ORTHO05D003747 5.1e-11 71.2 76 48.7
CDE05G2049 Ceratophyllum demersum HOM05D002313 ORTHO05D003747 6.7e-11 70.9 44 75.0
Solyc03g118010.4 Solanum lycopersicum HOM05D002313 ORTHO05D003747 6.7e-11 70.9 74 50.0
Lj1g0018640 Lotus japonicus HOM05D002313 ORTHO05D003747 8.8e-11 70.5 76 50.0
unitig_899.g14825 Utricularia gibba HOM05D002313 ORTHO05D003747 8.8e-11 70.5 73 52.1
VMungo1309G1375 Vigna mungo HOM05D002313 ORTHO05D003747 8.8e-11 70.5 76 48.7
Peaxi162Scf00314g00724 Petunia axillaris HOM05D002313 ORTHO05D003747 1.5e-10 69.7 74 50.0
Ca_14261_v3 Cicer arietinum L. HOM05D002313 ORTHO05D013935 2.0e-10 69.3 46 69.6
Actinidia18283 Actinidia chinensis HOM05D002313 ORTHO05D013935 2.5e-10 68.9 72 50.0
DCAR_025630 Daucus carota HOM05D002313 ORTHO05D003747 2.5e-10 68.9 79 48.1
ATR0582G099 Amborella trichopoda HOM05D002313 ORTHO05D003747 3.3e-10 68.6 77 49.4
Prupe.5G139000 Prunus persica HOM05D002313 ORTHO05D003747 4.3e-10 68.2 78 48.7
CSS0046976 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D013935 5.7e-10 67.8 72 51.4
CANSAT56G3711 Cannabis sativa HOM05D002313 ORTHO05D003747 5.7e-10 67.8 76 50.0
Psat7g040120 Pisum sativum HOM05D002313 ORTHO05D003747 5.7e-10 67.8 75 49.3
Rhsim08G0199800 Rhododendron simsii HOM05D002313 ORTHO05D003747 1.3e-09 66.6 75 49.3
TPR.G12895 Trifolium pratense HOM05D002313 ORTHO05D003747 1.3e-09 66.6 75 48.0
HPP92_007020 Vanilla planifolia HOM05D002313 ORTHO05D003747 1.3e-09 66.6 75 50.7
Migut.D01169 Erythranthe guttata HOM05D002313 ORTHO05D003747 2.2e-09 65.9 75 48.0
unitig_736.g22833 Utricularia gibba HOM05D002313 ORTHO05D003747 2.2e-09 65.9 72 47.2
Lj4g0022403 Lotus japonicus HOM05D002313 ORTHO05D003747 2.8e-09 65.5 76 47.4
Zm00001eb242260 Zea mays HOM05D002313 ORTHO05D003747 3.7e-09 65.1 75 50.7
C02p61630 Brassica napus HOM05D002313 ORTHO05D003747 4.8e-09 64.7 77 46.8
THA.LOC104801730 Tarenaya hassleriana HOM05D002313 ORTHO05D003747 4.8e-09 64.7 82 47.6
THA.LOC104819420 Tarenaya hassleriana HOM05D002313 ORTHO05D003747 4.8e-09 64.7 78 50.0
Zm00001eb180670 Zea mays HOM05D002313 ORTHO05D003747 4.8e-09 64.7 75 46.7
CSS0044109 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D013935 6.3e-09 64.3 39 74.4
Manes.06G128300 Manihot esculenta HOM05D002313 ORTHO05D003747 6.3e-09 64.3 75 46.7
Manes.14G043200 Manihot esculenta HOM05D002313 ORTHO05D003747 6.3e-09 64.3 75 45.3
MD00G1076400 Malus domestica HOM05D002313 ORTHO05D003747 8.2e-09 63.9 43 72.1
MD14G1144600 Malus domestica HOM05D002313 ORTHO05D003747 8.2e-09 63.9 43 72.1
Os02g0523500 Oryza sativa ssp. japonica HOM05D002313 ORTHO05D003747 8.2e-09 63.9 75 44.0
GSVIVG01032946001 Vitis vinifera HOM05D002313 ORTHO05D003747 8.2e-09 63.9 76 47.4
A02p41700 Brassica napus HOM05D002313 ORTHO05D004687 1.1e-08 63.5 77 45.5
CSS0019907 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D013935 1.4e-08 63.2 77 42.9
THA.LOC104818290 Tarenaya hassleriana HOM05D002313 ORTHO05D003747 1.4e-08 63.2 78 48.7
BcaC03g18096 Brassica carinata HOM05D002313 ORTHO05D003747 1.8e-08 62.8 79 44.3
BolC2t12218H Brassica oleracea HOM05D002313 ORTHO05D003747 1.8e-08 62.8 79 44.3
CSS0014357 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D013935 3.1e-08 62.0 70 50.0
AL6G17650 Arabidopsis lyrata HOM05D002313 ORTHO05D003747 4.1e-08 61.6 78 48.7
BcaB02g09601 Brassica carinata HOM05D002313 ORTHO05D003747 4.1e-08 61.6 72 51.4
CARHR205800 Cardamine hirsuta HOM05D002313 ORTHO05D003747 4.1e-08 61.6 78 48.7
Sp2g24980 Schrenkiella parvula HOM05D002313 ORTHO05D003747 4.1e-08 61.6 78 48.7
Thhalv10012565m.g Eutrema salsugineum HOM05D002313 ORTHO05D003747 5.3e-08 61.2 78 48.7
Aa31LG11G1700 Aethionema arabicum HOM05D002313 ORTHO05D003747 6.9e-08 60.8 78 47.4
Thhalv10003594m.g Eutrema salsugineum HOM05D002313 ORTHO05D003747 6.9e-08 60.8 78 47.4
Hund04139 Selenicereus undatus HOM05D002313 ORTHO05D003747 6.9e-08 60.8 77 48.1
CSS0036627 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D013935 9.1e-08 60.5 69 49.3
BcaB07g29821 Brassica carinata HOM05D002313 ORTHO05D003747 1.2e-07 60.1 78 46.2
Aa31LG3G19020 Aethionema arabicum HOM05D002313 ORTHO05D003747 1.5e-07 59.7 78 47.4
AT5G61780 Arabidopsis thaliana HOM05D002313 ORTHO05D003747 2.0e-07 59.3 78 46.2
BcaC01g02429 Brassica carinata HOM05D002313 ORTHO05D003747 2.0e-07 59.3 78 47.4
A06p28430 Brassica napus HOM05D002313 ORTHO05D003747 2.0e-07 59.3 78 47.4
C03p65380 Brassica napus HOM05D002313 ORTHO05D003747 2.0e-07 59.3 78 47.4
BraA06t25787Z Brassica rapa HOM05D002313 ORTHO05D003747 2.0e-07 59.3 78 47.4
Actinidia36851 Actinidia chinensis HOM05D002313 ORTHO05D014289 2.6e-07 58.9 42 61.9
AT5G07350 Arabidopsis thaliana HOM05D002313 ORTHO05D003747 3.4e-07 58.5 78 47.4
CARHR275540 Cardamine hirsuta HOM05D002313 ORTHO05D003747 3.4e-07 58.5 78 46.2
AagrBONN_evm.TU.Sc2ySwM_228.1433 Anthoceros agrestis HOM05D002313 ORTHO05D003747 4.5e-07 58.2 76 43.4
Carub.0006s0632 Capsella rubella HOM05D002313 ORTHO05D003747 5.9e-07 57.8 78 46.2
CBR_g45244 Chara braunii HOM05D002313 ORTHO05D003747 5.9e-07 57.8 77 45.5
Sp6g35530 Schrenkiella parvula HOM05D002313 ORTHO05D003747 5.9e-07 57.8 78 46.2
AL8G38540 Arabidopsis lyrata HOM05D002313 ORTHO05D003747 7.7e-07 57.4 78 44.9
CSS0022556 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D013935 7.7e-07 57.4 43 62.8
Oeu013668.4 Olea europaea HOM05D002313 ORTHO05D003747 7.7e-07 57.4 77 41.6
BcaC03g13188 Brassica carinata HOM05D002313 ORTHO05D003747 1.7e-06 56.2 51 58.8
BcaNung01419 Brassica carinata HOM05D002313 ORTHO05D003747 1.7e-06 56.2 130 33.8
C02p03090 Brassica napus HOM05D002313 ORTHO05D003747 1.7e-06 56.2 51 58.8
BolC2t06270H Brassica oleracea HOM05D002313 ORTHO05D003747 1.7e-06 56.2 51 58.8
BraA02t04914Z Brassica rapa HOM05D002313 ORTHO05D003747 1.7e-06 56.2 51 58.8
BcaB01g06036 Brassica carinata HOM05D002313 ORTHO05D003747 2.2e-06 55.8 50 56.0
BcaB05g21620 Brassica carinata HOM05D002313 ORTHO05D003747 2.2e-06 55.8 51 58.8
C03p03640 Brassica napus HOM05D002313 ORTHO05D003747 2.2e-06 55.8 50 56.0
BolC3t12903H Brassica oleracea HOM05D002313 ORTHO05D003747 2.2e-06 55.8 50 56.0
SMO358G0313 Selaginella moellendorffii HOM05D002313 ORTHO05D003747 2.9e-06 55.5 73 45.2
Lsat_1_v5_gn_1_29960 Lactuca sativa HOM05D002313 ORTHO05D003747 6.5e-06 54.3 72 40.3
PRCOL_00005726 Prasinoderma coloniale HOM05D002313 ORTHO05D003747 6.5e-06 54.3 40 62.5


User provided reference genes

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