Gene: Sopen03g036920

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g036920
  • Transcript Identifier Sopen03g036920.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 71531545-71538459 : negative

Gene Family Information

  • ID HOM05D002313
  • #Genes/#Species 293/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g036920.1

Descriptions

  • Description RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting on mRNAs entering the secretory pathway. Functionally redundant with TSN2. | TUDOR-SN protein 1 (Tudor1) | CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) , RNA-induced silencing complex, nuclease component Tudor-SN , Staphylococcal nuclease (SNase-like), OB-fold , Tudor subgroup , Tudor domain , Maternal tudor protein | BEST Arabidopsis thaliana protein match is: TUDOR-SN protein 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009306
ISO
PLAZA Integrative Orthologyprotein secretion AT5G07350
GO:0034605
ISO
PLAZA Integrative Orthologycellular response to heat AT5G07350
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT5G61780
GO:0006402
ISO
PLAZA Integrative OrthologymRNA catabolic process AT5G07350
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT5G07350
GO:0009686
ISO
PLAZA Integrative Orthologygibberellin biosynthetic process AT5G61780
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT5G07350
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT5G07350
GO:0010372
ISO
PLAZA Integrative Orthologypositive regulation of gibberellin biosynthetic process AT5G07350
GO:0031047
IEA
InterProgene silencing by RNA

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G07350
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT5G07350

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G07350
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT5G07350
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G07350
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT5G61780
GO:0005635
ISO
PLAZA Integrative Orthologynuclear envelope AT5G07350
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G07350
GO:0016442
IEA
InterProRISC complex
GO:0005783
ISO
PLAZA Integrative Orthologyendoplasmic reticulum AT5G07350
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT5G07350
GO:0010494
ISO
PLAZA Integrative Orthologycytoplasmic stress granule AT5G07350

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016071 Staphylococcal nuclease (SNase-like), OB-fold
IPR016685 RNA-induced silencing complex, nuclease component Tudor-SN
IPR035437 SNase-like, OB-fold superfamily
IPR002999 Tudor domain
Mapman id Description
16.8.5 RNA processing.mRNA sequestration.ribonuclease (TSN)