Gene: AT5G07350

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G07350
  • Transcript Identifier AT5G07350.1
  • Gene Type Coding gene
  • Location Chr5 : 2320344-2324892 : negative

Gene Family Information

  • ID HOM05D002313
  • #Genes/#Species 293/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G07350.1
  • symbol Tudor1
  • Alias AtTudor1,Arabidopsis thaliana TUDOR-SN protein 1,TSN1,TUDOR-SN protein 1
  • uniprot Q8VZG7

Descriptions

  • Description TUDOR-SN protein 1
  • Computational description TUDOR-SN protein 1 (Tudor1); FUNCTIONS IN: RNA binding, nuclease activity, nucleic acid binding; INVOLVED IN: response to cadmium ion, protein secretion, response to stress; LOCATED IN: in 6 components; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), RNA-induced silencing complex, nuclease component Tudor-SN (InterPro:IPR016685), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071), Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Maternal tudor protein (InterPro:IPR008191); BEST Arabidopsis thaliana protein match is: TUDOR-SN protein 2 (TAIR:AT5G61780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046686
IEP
GOA Databaseresponse to cadmium ion
GO:0006402
IMP, IGI
IBA
Gene OntologymRNA catabolic process1 2 3
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0006401
IBA
GOA DatabaseRNA catabolic process
GO:0031047
IEA
Gene Ontologygene silencing by RNA
GO:0031047
IEA
InterProgene silencing by RNA
GO:0009306
IGI
Gene Ontologyprotein secretion4
GO:0009651
IMP, IGI, IEP
Gene Ontologyresponse to salt stress4 5
GO:0010372
IMP
Gene Ontologypositive regulation of gibberellin biosynthetic process5
GO:0006397
IMP
Gene OntologymRNA processing2
GO:0034605
IDA
Gene Ontologycellular response to heat2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
Gene OntologymRNA binding6 7
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
IBA
TAS
Gene OntologyRNA binding1 4 5
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004518
IBA
Gene Ontologynuclease activity1
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
Gene Ontologynucleus1
GO:0005829
IDA
IBA
Gene Ontologycytosol1 4
GO:0005783
IEA
GOA Databaseendoplasmic reticulum
GO:0005783
IDA
Gene Ontologyendoplasmic reticulum4
GO:0005737
IBA
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm5
GO:0048471
IEA
GOA Databaseperinuclear region of cytoplasm
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
Gene Ontologyplasma membrane8
GO:0005618
IDA
GOA Databasecell wall
GO:0016442
IEA
Gene OntologyRISC complex
GO:0016442
IEA
InterProRISC complex
GO:0009505
HDA
Gene Ontologyplant-type cell wall9
GO:0005635
IDA
Gene Ontologynuclear envelope4
GO:0010494
IDA
Gene Ontologycytoplasmic stress granule5
GO:0000932
IDA
Gene OntologyP-body2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016071 Staphylococcal nuclease (SNase-like), OB-fold
IPR002999 Tudor domain
IPR035437 SNase-like, OB-fold superfamily
IPR016685 RNA-induced silencing complex, nuclease component Tudor-SN
Mapman id Description
16.8.5 RNA processing.mRNA sequestration.ribonuclease (TSN)