Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 3.5e-233 811.2 404 100.0
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 2.2e-206 722.2 404 88.9
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 8.2e-206 720.3 404 88.9
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 3.1e-205 718.4 406 87.9
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 5.9e-204 714.1 408 88.2
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 1.7e-203 712.6 410 87.1
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 5.0e-203 711.1 406 88.7
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 6.5e-203 710.7 410 87.3
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 6.5e-203 710.7 417 86.6
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 8.5e-203 710.3 407 88.0
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.1e-202 709.9 409 87.5
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 1.1e-202 709.9 409 87.5
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 1.1e-202 709.9 406 86.7
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.4e-202 709.5 407 87.0
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 2.5e-202 708.8 407 87.7
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 3.2e-202 708.4 408 86.3
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 4.2e-202 708.0 404 87.6
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 7.2e-202 707.2 403 87.8
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 1.2e-201 706.4 412 86.4
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 1.2e-201 706.4 409 86.3
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 1.2e-201 706.4 406 86.7
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 4.6e-201 704.5 406 86.5
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 1.0e-200 703.4 408 87.0
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.8e-200 702.6 407 86.7
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.8e-200 702.6 407 86.2
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 3.0e-200 701.8 407 85.5
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 3.0e-200 701.8 409 85.3
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 3.9e-200 701.4 404 86.6
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 5.1e-200 701.0 422 84.1
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 8.8e-200 700.3 401 87.0
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 1.5e-199 699.5 404 85.9
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.5e-199 699.5 409 86.3
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.0e-199 699.1 409 84.8
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 2.6e-199 698.7 409 87.0
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 2.6e-199 698.7 404 86.9
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.6e-199 698.7 409 85.8
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.6e-199 698.7 409 86.1
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 2.6e-199 698.7 409 86.1
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 3.3e-199 698.4 401 86.8
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 3.3e-199 698.4 407 86.2
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.3e-198 696.4 401 86.5
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.7e-198 696.0 404 85.9
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.7e-198 696.0 404 85.9
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.7e-198 696.0 407 86.2
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 2.2e-198 695.7 408 86.0
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 2.8e-198 695.3 422 83.4
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 2.8e-198 695.3 407 85.3
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 3.7e-198 694.9 404 85.6
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 4.8e-198 694.5 404 85.6
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 4.8e-198 694.5 410 85.9
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 6.3e-198 694.1 371 91.9
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 1.1e-197 693.3 408 86.0
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 2.4e-197 692.2 408 85.3
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 2.4e-197 692.2 415 83.9
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 4.1e-197 691.4 409 84.6
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 9.1e-197 690.3 404 85.6
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 9.1e-197 690.3 407 85.7
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 1.5e-196 689.5 405 85.2
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 1.5e-196 689.5 405 85.2
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 4.5e-196 688.0 405 84.9
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 1.0e-195 686.8 416 84.1
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 1.3e-195 686.4 406 84.0
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 1.7e-195 686.0 404 84.9
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 6.5e-195 684.1 411 84.2
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 6.5e-195 684.1 409 86.1
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 6.5e-195 684.1 409 86.1
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 8.5e-195 683.7 418 82.5
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 8.5e-195 683.7 405 84.0
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 1.1e-194 683.3 426 82.6
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.1e-194 683.3 407 84.8
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 7.2e-194 680.6 357 93.0
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 7.2e-194 680.6 410 83.9
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 2.1e-193 679.1 412 83.7
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 3.6e-193 678.3 405 84.2
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 3.6e-193 678.3 414 83.1
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 6.1e-193 677.6 371 88.7
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 7.9e-193 677.2 412 83.0
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 7.9e-193 677.2 412 83.0
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 7.9e-193 677.2 412 82.8
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 7.9e-193 677.2 369 88.6
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 1.0e-192 676.8 404 83.7
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 1.8e-192 676.0 407 82.8
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 1.8e-192 676.0 410 83.2
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 2.3e-192 675.6 412 82.3
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 2.3e-192 675.6 410 82.7
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 2.3e-192 675.6 371 89.5
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 2.3e-192 675.6 410 83.4
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 3.0e-192 675.2 412 82.5
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.0e-192 675.2 410 80.7
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 3.0e-192 675.2 411 82.5
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 3.9e-192 674.9 412 82.5
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 3.9e-192 674.9 412 82.3
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 6.7e-192 674.1 407 84.3
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 6.7e-192 674.1 405 84.2
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 8.8e-192 673.7 412 82.3
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 1.5e-191 672.9 408 80.6
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 5.7e-191 671.0 407 83.0
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 7.4e-191 670.6 383 86.9
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 1.1e-189 666.8 410 82.9
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.1e-189 666.8 358 89.9
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.8e-189 666.0 424 80.7
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 5.3e-189 664.5 408 82.4
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.2e-188 663.3 408 81.9
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 1.6e-188 662.9 411 81.8
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 3.5e-188 661.8 416 80.8
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 5.5e-186 654.4 386 84.5
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 5.5e-178 627.9 333 91.3
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.4e-176 623.2 364 82.4
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 2.0e-175 619.4 375 82.9
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 2.8e-174 615.5 354 83.3
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 6.3e-174 614.4 367 80.1
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.4e-173 612.5 407 75.2
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 3.5e-172 608.6 410 77.6
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.2e-169 600.1 401 74.8
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 2.2e-166 589.3 400 76.0
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 9.5e-162 573.9 338 84.0
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 1.9e-154 549.7 336 83.0
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 8.0e-153 544.3 320 84.7
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 9.8e-151 537.3 357 72.8
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 8.3e-150 534.3 317 85.2
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 2.8e-145 519.2 375 66.9
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 4.9e-142 508.4 402 67.9
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 6.4e-142 508.1 311 82.0
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 4.1e-141 505.4 283 85.9
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 1.1e-138 497.3 345 70.1
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.2e-137 493.8 364 68.1
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 3.8e-134 482.3 289 83.4
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 1.4e-133 480.3 302 82.5
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 4.3e-130 468.8 248 91.9
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.1e-128 464.2 344 65.7
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.1e-121 439.9 279 77.4
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 3.1e-120 436.0 285 77.9
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 2.8e-105 386.3 257 73.9
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 4.3e-98 362.5 319 61.8
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 9.8e-58 228.4 132 84.1
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.3e-57 228.0 132 83.3
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 3.8e-54 216.5 378 37.8
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.0e-48 195.7 118 79.7
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 9.2e-48 195.3 118 78.8
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 3.4e-42 176.8 104 84.6
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 1.7e-41 174.5 103 84.5
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 1.7e-41 174.5 103 84.5
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 1.6e-36 157.9 94 83.0
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.8e-36 157.1 101 78.2
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.4e-32 144.1 94 73.4
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 3.0e-30 137.1 91 78.0
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 1.5e-26 124.8 148 51.4
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 2.0e-26 124.4 105 66.7
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.6e-23 114.8 71 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.3e-22 111.7 59 88.1
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 1.2e-20 105.1 62 82.3
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 3.6e-20 103.6 81 67.9
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 4.0e-19 100.1 47 91.5
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 6.8e-19 99.4 59 83.1
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.3e-13 79.3 42 92.9
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 4.7e-12 76.6 78 60.3
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 2.1e-07 61.2 53 60.4


User provided reference genes

Program Settings