Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI10_g26754_MAGBIO Magnolia biondii HOM05D002009 ORTHO05D031586 4.1e-33 144.1 69 100.0
MBI03_g39989_MAGBIO Magnolia biondii HOM05D002009 ORTHO05D005728 1.0e-23 112.8 66 87.9
Thecc.07G044100 Theobroma cacao HOM05D002009 ORTHO05D005728 2.3e-23 111.7 66 86.4
CSS0020069 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D005728 5.1e-23 110.5 66 86.4
Duzib268G1329 Durio zibethinus HOM05D002009 ORTHO05D005728 5.1e-23 110.5 66 84.8
arahy.Tifrunner.gnm1.ann1.7D624Q Arachis hypogaea HOM05D002009 ORTHO05D005728 1.5e-22 109.0 66 84.8
arahy.Tifrunner.gnm1.ann1.BG9WT0 Arachis hypogaea HOM05D002009 ORTHO05D005728 1.5e-22 109.0 66 84.8
Lj2C610T1 Lonicera japonica HOM05D002009 ORTHO05D005728 2.5e-22 108.2 66 83.3
Cfa002919 Carpinus fangiana HOM05D002009 ORTHO05D005728 3.3e-22 107.8 66 83.3
CiPaw.03G119300 Carya illinoinensis HOM05D002009 ORTHO05D005728 3.3e-22 107.8 66 84.8
COL.COLO4_09630 Corchorus olitorius HOM05D002009 ORTHO05D005728 3.3e-22 107.8 66 81.8
Rhsim10G0131800 Rhododendron simsii HOM05D002009 ORTHO05D005728 3.3e-22 107.8 66 83.3
Actinidia06606 Actinidia chinensis HOM05D002009 ORTHO05D005728 4.3e-22 107.5 66 83.3
Aa31LG1G17940 Aethionema arabicum HOM05D002009 ORTHO05D005728 4.3e-22 107.5 66 81.8
arahy.Tifrunner.gnm1.ann1.SRPF4R Arachis hypogaea HOM05D002009 ORTHO05D031586 5.6e-22 107.1 66 81.8
AUR62000499 Chenopodium quinoa HOM05D002009 ORTHO05D005728 5.6e-22 107.1 66 81.8
AUR62006845 Chenopodium quinoa HOM05D002009 ORTHO05D005728 5.6e-22 107.1 66 81.8
Gohir.A13G139100 Gossypium hirsutum HOM05D002009 ORTHO05D005728 5.6e-22 107.1 66 83.3
Gorai.013G160900 Gossypium raimondii HOM05D002009 ORTHO05D005728 5.6e-22 107.1 66 83.3
Oeu058301.1 Olea europaea HOM05D002009 ORTHO05D005728 5.6e-22 107.1 66 83.3
Ca_16976_v3 Cicer arietinum L. HOM05D002009 ORTHO05D005728 7.3e-22 106.7 66 80.3
Glyma.06G155300 Glycine max HOM05D002009 ORTHO05D005728 7.3e-22 106.7 66 81.8
Manes.12G077400 Manihot esculenta HOM05D002009 ORTHO05D005728 7.3e-22 106.7 66 83.3
Ah.06g190900 Amaranthus hybridus HOM05D002009 ORTHO05D005728 9.6e-22 106.3 66 80.3
AL8G41220 Arabidopsis lyrata HOM05D002009 ORTHO05D005728 9.6e-22 106.3 66 81.8
Carub.0008s2474 Capsella rubella HOM05D002009 ORTHO05D005728 9.6e-22 106.3 66 81.8
Haze_25289 Corylus avellana HOM05D002009 ORTHO05D005728 9.6e-22 106.3 66 81.8
MELO3C024596.2 Cucumis melo HOM05D002009 ORTHO05D005728 9.6e-22 106.3 66 81.8
Aa31LG3G3040 Aethionema arabicum HOM05D002009 ORTHO05D005728 1.2e-21 105.9 66 81.8
AT5G63960 Arabidopsis thaliana HOM05D002009 ORTHO05D005728 1.2e-21 105.9 66 81.8
arahy.Tifrunner.gnm1.ann1.SAM4NP Arachis hypogaea HOM05D002009 ORTHO05D031586 1.2e-21 105.9 66 81.8
CARHR277870 Cardamine hirsuta HOM05D002009 ORTHO05D005728 1.2e-21 105.9 66 81.8
Cpa.g.sc42.182 Carica papaya HOM05D002009 ORTHO05D005728 1.2e-21 105.9 66 83.3
TWI31G0245 Tripterygium wilfordii HOM05D002009 ORTHO05D005728 1.2e-21 105.9 66 81.8
MSTRG.23471 Avicennia marina HOM05D002009 ORTHO05D005728 1.6e-21 105.5 66 80.3
EL10Ac4g09604 Beta vulgaris HOM05D002009 ORTHO05D005728 1.6e-21 105.5 66 80.3
MD00G1053300 Malus domestica HOM05D002009 ORTHO05D005728 1.6e-21 105.5 66 81.8
A06p30580 Brassica napus HOM05D002009 ORTHO05D005728 2.1e-21 105.1 66 80.3
C03p62380 Brassica napus HOM05D002009 ORTHO05D005728 2.1e-21 105.1 66 80.3
BolC3t18498H Brassica oleracea HOM05D002009 ORTHO05D005728 2.1e-21 105.1 66 80.3
BraA06t26010Z Brassica rapa HOM05D002009 ORTHO05D005728 2.1e-21 105.1 66 80.3
Dinv34360 Davidia involucrata HOM05D002009 ORTHO05D005728 2.1e-21 105.1 66 83.3
Gohir.D13G143900 Gossypium hirsutum HOM05D002009 ORTHO05D005728 2.1e-21 105.1 66 81.8
Os11g0186400 Oryza sativa ssp. japonica HOM05D002009 ORTHO05D005728 2.1e-21 105.1 66 80.3
QL10p042354 Quercus lobata HOM05D002009 ORTHO05D005728 2.8e-21 104.8 66 81.8
Hund07251 Selenicereus undatus HOM05D002009 ORTHO05D005728 2.8e-21 104.8 66 80.3
CAN.G128.115 Capsicum annuum HOM05D002009 ORTHO05D005728 3.6e-21 104.4 66 81.8
DCAR_001198 Daucus carota HOM05D002009 ORTHO05D005728 3.6e-21 104.4 66 80.3
Eucgr.I00173 Eucalyptus grandis HOM05D002009 ORTHO05D005728 3.6e-21 104.4 66 81.8
Thhalv10003565m.g Eutrema salsugineum HOM05D002009 ORTHO05D005728 3.6e-21 104.4 66 78.8
Glyma.04G210700 Glycine max HOM05D002009 ORTHO05D005728 3.6e-21 104.4 66 80.3
Potri.005G065800 Populus trichocarpa HOM05D002009 ORTHO05D005728 3.6e-21 104.4 66 80.3
Sc16g0009480 Simmondsia chinensis HOM05D002009 ORTHO05D005728 3.6e-21 104.4 66 81.8
CANSAT01G2904 Cannabis sativa HOM05D002009 ORTHO05D005728 4.7e-21 104.0 66 80.3
ClCG01G015100 Citrullus lanatus HOM05D002009 ORTHO05D005728 4.7e-21 104.0 66 80.3
PSO017G4864 Papaver somniferum HOM05D002009 ORTHO05D005728 4.7e-21 104.0 66 81.8
TAR376G0128 Trochodendron aralioides HOM05D002009 ORTHO05D005728 4.7e-21 104.0 66 81.8
Aqoxy5G02298 Aquilegia oxysepala HOM05D002009 ORTHO05D005728 6.2e-21 103.6 66 81.8
Phvul.009G155200 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 6.2e-21 103.6 66 80.3
Psat5g060760 Pisum sativum HOM05D002009 ORTHO05D005728 6.2e-21 103.6 66 78.8
CsaV3_6G041210 Cucumis sativus L. HOM05D002009 ORTHO05D005728 8.1e-21 103.2 66 80.3
Lj1g0002975 Lotus japonicus HOM05D002009 ORTHO05D005728 8.1e-21 103.2 66 78.8
Lalb_Chr23g0272641 Lupinus albus HOM05D002009 ORTHO05D005728 8.1e-21 103.2 66 78.8
Phvul.005G019000 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 8.1e-21 103.2 66 78.8
Sed0004291 Sechium edule HOM05D002009 ORTHO05D005728 8.1e-21 103.2 66 80.3
VMungo1309G0642 Vigna mungo HOM05D002009 ORTHO05D005728 8.1e-21 103.2 66 78.8
Peaxi162Scf00153g00816 Petunia axillaris HOM05D002009 ORTHO05D005728 1.1e-20 102.8 66 80.3
TPR.G28192 Trifolium pratense HOM05D002009 ORTHO05D005728 1.1e-20 102.8 66 78.8
CDE06G1389 Ceratophyllum demersum HOM05D002009 ORTHO05D005728 1.4e-20 102.4 66 78.8
Sabra05G0054400 Salix brachista HOM05D002009 ORTHO05D005728 1.4e-20 102.4 66 80.3
Ciclev10000086m.g Citrus clementina HOM05D002009 ORTHO05D005728 1.8e-20 102.1 66 81.8
Migut.H00864 Erythranthe guttata HOM05D002009 ORTHO05D005728 1.8e-20 102.1 66 80.3
PSO170G4442 Papaver somniferum HOM05D002009 ORTHO05D005728 1.8e-20 102.1 66 80.3
RcHm_v2.0_Chr2g0122111 Rosa chinensis HOM05D002009 ORTHO05D005728 1.8e-20 102.1 66 80.3
Sp2g27020 Schrenkiella parvula HOM05D002009 ORTHO05D005728 1.8e-20 102.1 66 78.8
Solyc10g081250.3 Solanum lycopersicum HOM05D002009 ORTHO05D005728 1.8e-20 102.1 66 80.3
Sopen10g031750 Solanum pennellii HOM05D002009 ORTHO05D005728 1.8e-20 102.1 66 80.3
HanXRQChr12g0380541 Helianthus annuus HOM05D002009 ORTHO05D005728 2.4e-20 101.7 66 80.3
Medtr3g096525 Medicago truncatula HOM05D002009 ORTHO05D005728 3.1e-20 101.3 66 77.3
GSVIVG01026455001 Vitis vinifera HOM05D002009 ORTHO05D005728 3.1e-20 101.3 66 80.3
ATR0584G016 Amborella trichopoda HOM05D002009 ORTHO05D005728 4.0e-20 100.9 66 75.8
Cc07_g18900 Coffea canephora HOM05D002009 ORTHO05D005728 4.0e-20 100.9 66 77.3
FvH4_1g24660 Fragaria vesca HOM05D002009 ORTHO05D005728 4.0e-20 100.9 66 80.3
FAN19G2450 Fragaria x ananassa HOM05D002009 ORTHO05D005728 4.0e-20 100.9 66 80.3
FAN23G2639 Fragaria x ananassa HOM05D002009 ORTHO05D005728 4.0e-20 100.9 66 80.3
FAN26G3211 Fragaria x ananassa HOM05D002009 ORTHO05D005728 4.0e-20 100.9 66 80.3
FAN28G0184 Fragaria x ananassa HOM05D002009 ORTHO05D005728 4.0e-20 100.9 66 80.3
Nn033s41620 Nelumbo nucifera HOM05D002009 ORTHO05D005728 4.0e-20 100.9 66 78.8
Nn5g28479 Nelumbo nucifera HOM05D002009 ORTHO05D005728 4.0e-20 100.9 66 78.8
Prupe.4G273600 Prunus persica HOM05D002009 ORTHO05D005728 4.0e-20 100.9 66 78.8
Zm00001eb201340 Zea mays HOM05D002009 ORTHO05D005728 5.2e-20 100.5 66 78.8
ECA233G2868 Erigeron canadensis HOM05D002009 ORTHO05D005728 6.9e-20 100.1 66 80.3
Lsat_1_v5_gn_5_68921 Lactuca sativa HOM05D002009 ORTHO05D005728 8.9e-20 99.8 66 78.8
Nitab4.5_0000062g0530 Nicotiana tabacum HOM05D002009 ORTHO05D005728 1.2e-19 99.4 66 77.3
Nitab4.5_0003690g0060 Nicotiana tabacum HOM05D002009 ORTHO05D005728 1.2e-19 99.4 66 77.3
SGA_v2.0_scaffold273G46462 Striga asiatica HOM05D002009 ORTHO05D005728 1.2e-19 99.4 66 78.8
AagrBONN_evm.TU.Sc2ySwM_344.4377 Anthoceros agrestis HOM05D002009 ORTHO05D005728 1.5e-19 99.0 66 77.3
SMO232G0005 Selaginella moellendorffii HOM05D002009 ORTHO05D005728 2.0e-19 98.6 66 75.8
THA.LOC104818425 Tarenaya hassleriana HOM05D002009 ORTHO05D005728 2.0e-19 98.6 66 77.3
Migut.E01506 Erythranthe guttata HOM05D002009 ORTHO05D005728 9.9e-19 96.3 66 75.8
Atru.chr4.962 Acer truncatum HOM05D002009 ORTHO05D005728 1.3e-18 95.9 66 77.3
Pp3c27_3350 Physcomitrium patens HOM05D002009 ORTHO05D005728 4.9e-18 94.0 66 69.7
Mapoly0087s0021 Marchantia polymorpha HOM05D002009 ORTHO05D005728 1.1e-17 92.8 65 70.8
arahy.Tifrunner.gnm1.ann1.9F49MR Arachis hypogaea HOM05D002009 ORTHO05D004937 1.4e-17 92.4 47 91.5
Migut.B00967 Erythranthe guttata HOM05D002009 ORTHO05D005728 1.2e-16 89.4 66 71.2
SHI11495 Sapria himalayana HOM05D002009 ORTHO05D005728 2.1e-16 88.6 61 75.4
Pp3c6_19160 Physcomitrium patens HOM05D002009 ORTHO05D005728 3.5e-16 87.8 66 66.7
CBR_g38906 Chara braunii HOM05D002009 ORTHO05D005728 4.6e-16 87.4 65 69.2
HPP92_005659 Vanilla planifolia HOM05D002009 ORTHO05D005728 7.8e-16 86.7 66 66.7
vmacro12782 Vaccinium macrocarpon HOM05D002009 ORTHO05D005728 1.7e-15 85.5 112 49.1
MCO05G447 Micromonas commoda HOM05D002009 ORTHO05D005728 2.8e-13 78.2 62 62.9
PRCOL_00002177 Prasinoderma coloniale HOM05D002009 ORTHO05D005728 4.8e-13 77.4 65 60.0
MD07G1029900 Malus domestica HOM05D002009 ORTHO05D005728 4.0e-12 74.3 78 57.7
Cre01.g015250 Chlamydomonas reinhardtii HOM05D002009 ORTHO05D005728 7.1e-09 63.5 42 64.3
Cfa025827 Carpinus fangiana HOM05D002009 ORTHO05D005728 6.0e-08 60.5 62 45.2
Pp3c17_18800 Physcomitrium patens HOM05D002009 ORTHO05D005728 6.0e-08 60.5 49 59.2
Haze_26645 Corylus avellana HOM05D002009 ORTHO05D005728 7.9e-08 60.1 69 43.5
CAN.G1034.31 Capsicum annuum HOM05D002009 ORTHO05D006831 3.9e-07 57.8 81 34.6
Lalb_Chr18g0045671 Lupinus albus HOM05D002009 ORTHO05D006831 6.7e-07 57.0 77 37.7
SHI18128 Sapria himalayana HOM05D002009 ORTHO05D006831 6.7e-07 57.0 77 36.4
Solyc01g099220.3 Solanum lycopersicum HOM05D002009 ORTHO05D006831 6.7e-07 57.0 81 33.3
Sopen01g042770 Solanum pennellii HOM05D002009 ORTHO05D006831 6.7e-07 57.0 81 33.3
Cre03.g198750 Chlamydomonas reinhardtii HOM05D002009 ORTHO05D005728 8.7e-07 56.6 37 67.6
DCAR_001814 Daucus carota HOM05D002009 ORTHO05D006831 1.1e-06 56.2 72 41.7
Aqoxy2G03070 Aquilegia oxysepala HOM05D002009 ORTHO05D006831 1.5e-06 55.8 81 35.8
ECA236G3568 Erigeron canadensis HOM05D002009 ORTHO05D006831 1.5e-06 55.8 72 41.7
MELO3C004237.2 Cucumis melo HOM05D002009 ORTHO05D006831 1.9e-06 55.5 81 34.6
CsaV3_2G006490 Cucumis sativus L. HOM05D002009 ORTHO05D006831 2.5e-06 55.1 81 34.6
Lj1g0026508 Lotus japonicus HOM05D002009 ORTHO05D006831 2.5e-06 55.1 80 37.5
Oeu002661.1 Olea europaea HOM05D002009 ORTHO05D006831 2.5e-06 55.1 72 40.3
Peaxi162Scf00037g00637 Petunia axillaris HOM05D002009 ORTHO05D006831 2.5e-06 55.1 72 37.5
Lsat_1_v5_gn_9_86800 Lactuca sativa HOM05D002009 ORTHO05D006831 3.3e-06 54.7 72 41.7
ClCG02G015610 Citrullus lanatus HOM05D002009 ORTHO05D006831 4.3e-06 54.3 81 34.6
Eucgr.B01945 Eucalyptus grandis HOM05D002009 ORTHO05D006831 4.3e-06 54.3 81 34.6
Glyma.03G237200 Glycine max HOM05D002009 ORTHO05D006831 4.3e-06 54.3 77 36.4
Psat0s2197g0160 Pisum sativum HOM05D002009 ORTHO05D006831 4.3e-06 54.3 77 36.4
CBR_g30807 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-06 53.9 41 56.1
Medtr7g113380 Medicago truncatula HOM05D002009 ORTHO05D006831 5.6e-06 53.9 77 36.4
Phvul.006G091300 Phaseolus vulgaris HOM05D002009 ORTHO05D006831 5.6e-06 53.9 77 36.4
THA.LOC104823729 Tarenaya hassleriana HOM05D002009 ORTHO05D006831 5.6e-06 53.9 81 33.3
TPR.G33207 Trifolium pratense HOM05D002009 ORTHO05D006831 5.6e-06 53.9 47 46.8
VMungo0540G0763 Vigna mungo HOM05D002009 ORTHO05D006831 5.6e-06 53.9 77 36.4
Dinv40301 Davidia involucrata HOM05D002009 ORTHO05D006831 7.4e-06 53.5 72 41.7
Hma1.2p1_1077F.1_g254700 Hydrangea macrophylla HOM05D002009 ORTHO05D006831 7.4e-06 53.5 60 40.0
Nn3g21358 Nelumbo nucifera HOM05D002009 ORTHO05D006831 7.4e-06 53.5 77 33.8
Sed0001711 Sechium edule HOM05D002009 ORTHO05D006831 7.4e-06 53.5 81 35.8
Ciclev10003639m.g Citrus clementina HOM05D002009 ORTHO05D006831 9.6e-06 53.1 35 60.0
HanXRQChr15g0469941 Helianthus annuus HOM05D002009 ORTHO05D006831 9.6e-06 53.1 77 36.4
Manes.09G167800 Manihot esculenta HOM05D002009 ORTHO05D006831 9.6e-06 53.1 79 36.7
Thecc.05G301300 Theobroma cacao HOM05D002009 ORTHO05D006831 9.6e-06 53.1 77 36.4


User provided reference genes

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