Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g14248_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 1.6e-211 739.2 390 100.0
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 2.8e-171 605.5 374 88.8
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 5.8e-148 528.1 374 76.2
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 6.0e-145 518.1 374 74.3
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 2.3e-144 516.2 374 73.5
ATR1089G005 Amborella trichopoda HOM05D003404 ORTHO05D004052 1.1e-143 513.8 376 74.2
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 1.1e-143 513.8 374 75.1
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 1.9e-143 513.1 374 73.5
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 5.6e-143 511.5 374 71.9
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 1.6e-142 510.0 374 71.4
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 1.6e-142 510.0 374 73.5
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 2.8e-142 509.2 374 71.4
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 4.7e-142 508.4 374 73.5
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 1.4e-141 506.9 374 71.7
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 1.8e-141 506.5 383 70.5
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 1.8e-141 506.5 383 70.5
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 1.8e-141 506.5 374 73.8
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 3.1e-141 505.8 374 73.0
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 1.2e-140 503.8 374 73.0
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 1.2e-140 503.8 401 70.6
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 3.4e-140 502.3 383 70.5
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 3.4e-140 502.3 374 71.4
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 9.8e-140 500.7 373 72.7
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 2.2e-139 499.6 374 71.9
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 2.9e-139 499.2 373 72.1
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 2.9e-139 499.2 374 70.3
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 6.4e-139 498.0 374 72.2
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 6.4e-139 498.0 374 71.9
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 1.1e-138 497.3 374 71.9
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 2.4e-138 496.1 374 70.6
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 3.2e-138 495.7 374 72.2
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 2.1e-137 493.0 374 71.7
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 2.1e-137 493.0 362 71.0
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 2.1e-137 493.0 374 72.7
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 3.5e-137 492.3 374 71.7
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 3.5e-137 492.3 374 70.3
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 3.5e-137 492.3 374 69.3
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 3.5e-137 492.3 374 69.0
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 4.6e-137 491.9 374 69.3
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 4.6e-137 491.9 374 69.3
Nitab4.5_0007689g0020 Nicotiana tabacum HOM05D003404 ORTHO05D004052 6.0e-137 491.5 374 69.3
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 6.0e-137 491.5 374 71.9
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 1.0e-136 490.7 374 71.9
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 1.0e-136 490.7 374 71.9
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 1.7e-136 490.0 374 72.2
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 1.7e-136 490.0 404 65.8
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 2.3e-136 489.6 374 72.5
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 2.3e-136 489.6 374 68.7
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 3.0e-136 489.2 374 72.2
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 8.6e-136 487.6 374 70.9
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 8.6e-136 487.6 374 68.4
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 1.1e-135 487.3 374 69.5
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.5e-135 486.9 374 70.6
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 1.5e-135 486.9 374 70.1
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 1.5e-135 486.9 374 71.4
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 1.5e-135 486.9 374 71.7
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 1.5e-135 486.9 374 70.9
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 7.3e-135 484.6 362 73.2
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 9.5e-135 484.2 373 68.1
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 2.8e-134 482.6 372 70.2
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 2.8e-134 482.6 374 68.4
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 6.2e-134 481.5 364 70.1
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 6.8e-133 478.0 400 66.8
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 6.8e-133 478.0 374 69.0
Oeu028473.1 Olea europaea HOM05D003404 ORTHO05D004052 1.2e-132 477.2 365 65.8
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 1.2e-132 477.2 374 68.4
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 3.4e-132 475.7 374 68.2
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 1.3e-131 473.8 374 67.9
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 1.3e-131 473.8 374 68.4
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 1.3e-131 473.8 374 68.4
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 1.2e-129 467.2 360 69.4
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 1.6e-129 466.8 374 69.5
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 2.1e-129 466.5 377 65.3
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.1e-127 460.7 374 67.4
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 2.5e-127 459.5 374 63.9
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 3.3e-127 459.1 374 65.8
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 4.7e-126 455.3 374 64.4
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 4.0e-125 452.2 374 65.2
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 1.7e-123 446.8 374 65.8
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 2.9e-123 446.0 374 65.5
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 8.4e-123 444.5 374 63.6
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 1.9e-122 443.4 374 63.6
BcaC06g31227 Brassica carinata HOM05D003404 ORTHO05D004052 2.4e-122 443.0 374 62.0
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 2.4e-122 443.0 374 62.0
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 3.2e-122 442.6 374 63.9
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 2.7e-121 439.5 374 62.8
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 3.5e-121 439.1 374 62.8
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 3.5e-121 439.1 374 62.8
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 6.0e-121 438.3 374 62.8
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 7.8e-121 438.0 374 62.8
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 1.3e-120 437.2 374 62.6
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 1.7e-120 436.8 374 62.3
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 1.7e-120 436.8 374 63.1
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 7.3e-119 431.4 374 63.9
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 2.1e-118 429.9 457 52.3
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 4.8e-118 428.7 400 58.0
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 9.0e-117 424.5 400 58.8
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 1.5e-116 423.7 359 63.2
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 2.0e-116 423.3 374 60.4
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 2.1e-113 413.3 374 64.4
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 4.6e-113 412.1 311 70.4
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 3.0e-112 409.5 363 60.3
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 3.3e-111 406.0 371 61.5
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 7.3e-111 404.8 375 61.1
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 9.6e-111 404.4 371 61.5
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 2.1e-110 403.3 324 68.2
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 1.6e-105 387.1 373 58.2
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 5.6e-103 378.6 455 50.5
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 2.8e-102 376.3 290 71.0
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 6.9e-101 371.7 374 59.9
Os02g0169800 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 1.3e-99 367.5 292 65.4
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 3.1e-93 346.3 360 58.9
BcaC06g31226 Brassica carinata HOM05D003404 ORTHO05D004052 4.3e-87 325.9 261 61.7
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 1.6e-86 323.9 374 50.8
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 1.9e-82 310.5 374 48.7
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 7.2e-82 308.5 374 48.4
FAN10G3720 Fragaria x ananassa HOM05D003404 ORTHO05D004052 5.3e-77 292.4 194 74.7
FAN10G0829 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.5e-76 290.8 194 74.2
CBR_g18772 Chara braunii HOM05D003404 ORTHO05D004052 2.7e-73 280.0 304 53.0
BcaC06g34049 Brassica carinata HOM05D003404 ORTHO05D004052 1.5e-66 257.7 194 64.4
SEGI_37814 Sequoiadendron giganteum HOM05D003404 ORTHO05D004052 1.2e-60 238.0 187 61.0
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 5.9e-52 209.1 375 38.7
Haze_26135 Corylus avellana HOM05D003404 ORTHO05D004052 1.0e-51 208.4 386 32.1
Cre03.g177053 Chlamydomonas reinhardtii HOM05D003404 ORTHO05D004052 8.8e-48 195.3 412 35.7
Lsat_1_v5_gn_8_101580 Lactuca sativa HOM05D001355 ORTHO05D004052 1.6e-44 184.5 176 60.2
Hund15376 Selenicereus undatus HOM05D003404 ORTHO05D004052 2.4e-37 160.6 137 62.0
PRCOL_00003487 Prasinoderma coloniale HOM05D003404 ORTHO05D004052 5.9e-36 156.0 356 34.6
Hund15388 Selenicereus undatus HOM05D003404 ORTHO05D004052 3.6e-33 146.7 343 37.3
MCO07G702 Micromonas commoda HOM05D003404 ORTHO05D004052 1.9e-29 134.4 413 30.0
Actinidia01639 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.7e-27 127.9 76 84.2
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 1.5e-26 124.8 154 48.7
Lsat_1_v5_gn_6_52600 Lactuca sativa HOM05D003404 ORTHO05D016190 1.2e-23 115.2 98 63.3
PGSC0003DMG400025772 Solanum tuberosum HOM05D001465 ORTHO05D001434 1.1e-21 108.6 243 33.3
Cfa023835 Carpinus fangiana HOM05D003404 ORTHO05D004052 2.3e-19 100.9 425 26.1
TPR.G7178 Trifolium pratense HOM05D003404 ORTHO05D004052 5.1e-19 99.8 82 61.0
RcHm_v2.0_Chr3g0481561 Rosa chinensis HOM05D003404 ORTHO05D029456 1.1e-18 98.6 93 54.8
Actinidia04155 Actinidia chinensis HOM05D003404 ORTHO05D004052 2.3e-16 90.9 263 27.4
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 2.6e-15 87.4 60 70.0
TPR.G40778 Trifolium pratense HOM05D003404 ORTHO05D004052 4.4e-15 86.7 69 58.0
TPR.G35216 Trifolium pratense HOM05D003404 ORTHO05D037367 5.8e-15 86.3 69 84.1
TPR.G35220 Trifolium pratense HOM05D003404 ORTHO05D037367 3.8e-14 83.6 78 59.0
FvH4_3g22840 Fragaria vesca HOM05D003404 ORTHO05D004052 2.4e-13 80.9 69 56.5
TPR.G15895 Trifolium pratense HOM05D003404 ORTHO05D004052 6.0e-12 76.3 58 60.3
Psat4g002600 Pisum sativum HOM05D003404 ORTHO05D037367 2.5e-10 70.9 60 85.0
BcaC06g31225 Brassica carinata HOM05D003404 ORTHO05D004052 4.3e-10 70.1 59 74.6
TPR.G21811 Trifolium pratense HOM05D002870 ORTHO05D003241 7.3e-10 69.3 61 54.1
Zm00001eb006600 Zea mays HOM05D003404 ORTHO05D004052 1.3e-06 58.5 35 74.3
SalBow1G0245 Salvia bowleyana HOM05D002043 ORTHO05D002207 8.4e-06 55.8 87 39.1


User provided reference genes

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