Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g07797_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D002212 9.3e-44 179.9 94 100.0
FAN19G1681 Fragaria x ananassa HOM05D001363 ORTHO05D002212 5.0e-13 77.8 47 83.0
FAN26G2497 Fragaria x ananassa HOM05D001363 ORTHO05D002212 5.0e-13 77.8 47 83.0
FAN26G3142 Fragaria x ananassa HOM05D001363 ORTHO05D002212 5.0e-13 77.8 47 83.0
MELO3C015555.2 Cucumis melo HOM05D001363 ORTHO05D002212 8.5e-13 77.0 68 64.7
Lalb_Chr13g0299171 Lupinus albus HOM05D001363 ORTHO05D002212 1.1e-12 76.6 50 78.0
Atru.chr7.1786 Acer truncatum HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Actinidia30261 Actinidia chinensis HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Aa31LG1G13910 Aethionema arabicum HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
ATR0099G088 Amborella trichopoda HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 1.9e-12 75.9 39 94.9
arahy.Tifrunner.gnm1.ann1.ZG5TLI Arachis hypogaea HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
MSTRG.26502 Avicennia marina HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
EL10Ac8g18958 Beta vulgaris HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
BcaB01g04765 Brassica carinata HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
BcaB08g37323 Brassica carinata HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
BcaC04g19474 Brassica carinata HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
A03p10300 Brassica napus HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
A10p19230 Brassica napus HOM05D001035 ORTHO05D002212 1.9e-12 75.9 39 94.9
C03p11830 Brassica napus HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
C09p55350 Brassica napus HOM05D001035 ORTHO05D002212 1.9e-12 75.9 39 94.9
BolC3t13653H Brassica oleracea HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
BolC9t58396H Brassica oleracea HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
BraA03t10341Z Brassica rapa HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
BraA10t43999Z Brassica rapa HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
CSS0036462 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
CANSAT56G1728 Cannabis sativa HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
CANSAT56G4234 Cannabis sativa HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Cpa.g.sc344.4 Carica papaya HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Cfa002932 Carpinus fangiana HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
CiPaw.03G199800 Carya illinoinensis HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
AUR62025331 Chenopodium quinoa HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
AUR62028330 Chenopodium quinoa HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Ca_21345_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
ClCG03G014730 Citrullus lanatus HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Cc06_g12790 Coffea canephora HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
COL.COLO4_21194 Corchorus olitorius HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Haze_26077 Corylus avellana HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
CsaV3_1G041430 Cucumis sativus L. HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Duzib150G1587 Durio zibethinus HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Thhalv10014015m.g Eutrema salsugineum HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
FvH4_1g09550 Fragaria vesca HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
FAN23G1418 Fragaria x ananassa HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
FAN28G0572 Fragaria x ananassa HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Glyma.17G045000 Glycine max HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Gohir.A06G084300 Gossypium hirsutum HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Gohir.D05G038300 Gossypium hirsutum HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Gorai.009G038800 Gossypium raimondii HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Gorai.010G095300 Gossypium raimondii HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Lj4A921G25 Lonicera japonica HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Lj4g0012557 Lotus japonicus HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Lalb_Chr07g0181451 Lupinus albus HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
MBI13_g01696_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
MD15G1224500 Malus domestica HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Manes.03G045500 Manihot esculenta HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Nn8g38520 Nelumbo nucifera HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Nitab4.5_0000055g0030 Nicotiana tabacum HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Nitab4.5_0009802g0010 Nicotiana tabacum HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Os12g0497300 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
PSO104G0020 Papaver somniferum HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
PSO421G0332 Papaver somniferum HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Peaxi162Scf00320g00008 Petunia axillaris HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Phvul.003G126800 Phaseolus vulgaris HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Psat0s6099g0040 Pisum sativum HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Potri.006G135200 Populus trichocarpa HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Prupe.7G190800 Prunus persica HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Rhsim05G0001700 Rhododendron simsii HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
RcHm_v2.0_Chr2g0096301 Rosa chinensis HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Sabra06G0106000 Salix brachista HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
SalBow6G1528 Salvia bowleyana HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Sed0016085 Sechium edule HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Sed0023064 Sechium edule HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Sc08g0009210 Simmondsia chinensis HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Thecc.09G069100 Theobroma cacao HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
TWI32G0277 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
TAR381G1732 Trochodendron aralioides HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 1.9e-12 75.9 39 94.9
GSVIVG01015002001 Vitis vinifera HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
Zm00001eb138190 Zea mays HOM05D001363 ORTHO05D002212 1.9e-12 75.9 39 94.9
AL6G32360 Arabidopsis lyrata HOM05D001363 ORTHO05D002212 2.5e-12 75.5 39 92.3
AT5G20850 Arabidopsis thaliana HOM05D001363 ORTHO05D002212 2.5e-12 75.5 39 92.3
Carub.0006s1914 Capsella rubella HOM05D001363 ORTHO05D002212 2.5e-12 75.5 39 92.3
CARHR192000 Cardamine hirsuta HOM05D001363 ORTHO05D002212 2.5e-12 75.5 39 92.3
Os11g0615800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 2.5e-12 75.5 39 92.3
Sp6g23680 Schrenkiella parvula HOM05D001363 ORTHO05D002212 2.5e-12 75.5 39 92.3
Zm00001eb325310 Zea mays HOM05D001363 ORTHO05D002212 2.5e-12 75.5 39 92.3
Aqoxy7G00934 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 4.2e-12 74.7 39 92.3
Ciclev10010591m.g Citrus clementina HOM05D001363 ORTHO05D002212 4.2e-12 74.7 39 92.3
Dinv42435 Davidia involucrata HOM05D001363 ORTHO05D002212 4.2e-12 74.7 39 92.3
Eucgr.C00762 Eucalyptus grandis HOM05D001363 ORTHO05D002212 4.2e-12 74.7 39 92.3
MBI09_g28576_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D002212 4.2e-12 74.7 43 86.0
TPR.G31379 Trifolium pratense HOM05D001363 ORTHO05D002212 4.2e-12 74.7 39 92.3
DCAR_011907 Daucus carota HOM05D001363 ORTHO05D002212 5.5e-12 74.3 39 89.7
Glyma.13G115000 Glycine max HOM05D001363 ORTHO05D002212 5.5e-12 74.3 39 92.3
Hund08908 Selenicereus undatus HOM05D001363 ORTHO05D002212 5.5e-12 74.3 39 92.3
SEGI_34777 Sequoiadendron giganteum HOM05D001363 ORTHO05D002212 5.5e-12 74.3 39 92.3
CAN.G1913.2 Capsicum annuum HOM05D001363 ORTHO05D002212 7.2e-12 73.9 39 92.3
Migut.L01599 Erythranthe guttata HOM05D001363 ORTHO05D002212 7.2e-12 73.9 39 92.3
Gohir.A05G036800 Gossypium hirsutum HOM05D001363 ORTHO05D002212 7.2e-12 73.9 38 94.7
Medtr4g124560 Medicago truncatula HOM05D001363 ORTHO05D002212 7.2e-12 73.9 39 92.3
PSO104G0038 Papaver somniferum HOM05D001363 ORTHO05D002212 7.2e-12 73.9 39 92.3
THA.LOC104815070 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 7.2e-12 73.9 39 92.3
TWI34G0642 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 7.2e-12 73.9 39 92.3
vmacro03338 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 7.2e-12 73.9 39 92.3
ECA236G1669 Erigeron canadensis HOM05D000783 ORTHO05D002212 9.4e-12 73.6 39 92.3
HanXRQChr04g0125381 Helianthus annuus HOM05D001363 ORTHO05D002212 9.4e-12 73.6 39 92.3
Lsat_1_v5_gn_8_85121 Lactuca sativa HOM05D001363 ORTHO05D002212 9.4e-12 73.6 39 92.3
Oeu004804.1 Olea europaea HOM05D001363 ORTHO05D002212 9.4e-12 73.6 39 89.7
unitig_8.g4424 Utricularia gibba HOM05D001363 ORTHO05D002212 9.4e-12 73.6 39 87.2
HPP92_005863 Vanilla planifolia HOM05D001363 ORTHO05D002212 9.4e-12 73.6 39 92.3
ECA234G1240 Erigeron canadensis HOM05D001363 ORTHO05D002212 1.2e-11 73.2 39 89.7
PGR142G1755 Punica granatum HOM05D001363 ORTHO05D002212 1.6e-11 72.8 39 89.7
Solyc07g017540.4 Solanum lycopersicum HOM05D001363 ORTHO05D002212 1.6e-11 72.8 39 89.7
Sopen07g006340 Solanum pennellii HOM05D001363 ORTHO05D002212 1.6e-11 72.8 39 89.7
TPR.G12712 Trifolium pratense HOM05D001363 ORTHO05D002212 1.6e-11 72.8 39 89.7
TAR624G1167 Trochodendron aralioides HOM05D001363 ORTHO05D002212 1.6e-11 72.8 41 87.8
CDE06G2469 Ceratophyllum demersum HOM05D001363 ORTHO05D002212 6.1e-11 70.9 39 87.2
QL11p003297 Quercus lobata HOM05D001363 ORTHO05D002212 6.1e-11 70.9 39 87.2
MBI15_g03892_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 7.9e-11 70.5 61 68.9
Mapoly0024s0069 Marchantia polymorpha HOM05D001363 ORTHO05D002212 7.9e-11 70.5 39 84.6
CDE07G0130 Ceratophyllum demersum HOM05D001363 ORTHO05D002212 1.8e-10 69.3 39 84.6
CBR_g49283 Chara braunii HOM05D001363 ORTHO05D002212 5.1e-10 67.8 38 81.6
AagrBONN_evm.TU.Sc2ySwM_362.1271 Anthoceros agrestis HOM05D001363 ORTHO05D002212 8.8e-10 67.0 39 79.5
HanXRQChr06g0185161 Helianthus annuus HOM05D000871 ORTHO05D011596 1.5e-09 66.2 40 82.5
Pp3c7_7920 Physcomitrium patens HOM05D001363 ORTHO05D002212 2.5e-09 65.5 39 74.4
TPR.G17176 Trifolium pratense HOM05D001363 ORTHO05D011788 2.5e-09 65.5 38 81.6
Pp3c11_22000 Physcomitrium patens HOM05D001363 ORTHO05D002212 4.3e-09 64.7 39 74.4
PRCOL_00001374 Prasinoderma coloniale HOM05D001363 ORTHO05D002212 5.7e-09 64.3 39 76.9
Haze_27294 Corylus avellana HOM05D001363 ORTHO05D002212 8.2e-08 60.5 41 65.9
Peaxi162Scf01560g00004 Petunia axillaris HOM05D001363 ORTHO05D002212 5.3e-07 57.8 38 73.7
Cfa026395 Carpinus fangiana HOM05D001363 ORTHO05D002212 1.2e-06 56.6 41 61.0
Lsat_1_v5_gn_1_55581 Lactuca sativa HOM05D001363 ORTHO05D002212 1.2e-06 56.6 32 84.4
Cre14.g622850 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D002212 7.7e-06 53.9 39 66.7


User provided reference genes

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