Gene: TPR.G12712
General Information
Structural Information
- Species Trifolium pratense
- Gene Identifier TPR.G12712
- Transcript Identifier TPR.T13129
- Gene Type Coding gene
- Location Tp57577_TGAC_v2_LG2 : 24897338-24900418 : positive
Gene Family Information
- ID HOM05D001363
- #Genes/#Species 458/99
- Phylogenetic origin
- ID ORTHO05D002212
- #Genes/#Species 307/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Tp57577_TGAC_v2_mRNA13129.v2
- id Tp57577_TGAC_v2_gene12712.v2
- pacid 35971905
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000724 | IEA | InterPro | double-strand break repair via homologous recombination | |
| GO:1990426 | IEA | InterPro | mitotic recombination-dependent replication fork processing | |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT5G20850 |
| GO:0045003 | ISO | PLAZA Integrative Orthology | double-strand break repair via synthesis-dependent strand annealing | AT5G20850 |
| GO:0010332 | ISO | PLAZA Integrative Orthology | response to gamma radiation | AT5G20850 |
| GO:0006259 | ISO | PLAZA Integrative Orthology | DNA metabolic process | AT5G20850 |
| GO:0006302 | ISO | PLAZA Integrative Orthology | double-strand break repair | AT5G20850 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0000150 | IEA | InterPro | DNA strand exchange activity | |
| GO:0003690 | IEA | InterPro | double-stranded DNA binding | |
| GO:0003697 | IEA | InterPro | single-stranded DNA binding | |
| GO:0008094 | IEA | InterPro | ATPase, acting on DNA | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G20850 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G20850 |
| GO:0005694 | ISO | PLAZA Integrative Orthology | chromosome | AT5G20850 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR016467 | DNA recombination and repair protein, RecA-like |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR010995 | DNA repair Rad51/transcription factor NusA, alpha-helical |
| IPR003593 | AAA+ ATPase domain |
| IPR013632 | DNA recombination and repair protein Rad51-like, C-terminal |
| IPR033925 | Rad51/DMC1/RadA |
| IPR011941 | DNA recombination/repair protein Rad51 |
| Mapman id | Description |
|---|---|
| 14.3.2.4 | DNA damage response.homologous recombination repair (HR).BRCC DNA-damage response complex.component RAD51 |