Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 4.3e-127 458.0 228 100.0
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 9.4e-58 227.6 124 94.4
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 4.4e-55 218.8 126 92.9
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 1.7e-54 216.9 154 72.7
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 2.8e-54 216.1 157 72.6
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.8e-54 216.1 157 73.2
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 4.8e-54 215.3 156 71.2
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 1.1e-53 214.2 156 72.4
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 1.4e-53 213.8 159 69.8
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 1.8e-53 213.4 156 71.8
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 3.1e-53 212.6 156 71.8
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 7.0e-53 211.5 159 69.2
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.2e-52 210.7 155 71.0
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 1.2e-52 210.7 156 69.9
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.2e-52 210.7 156 69.9
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.0e-52 209.9 156 69.2
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 2.0e-52 209.9 156 69.2
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 3.5e-52 209.1 185 61.1
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 3.5e-52 209.1 158 73.4
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 3.5e-52 209.1 158 73.4
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 5.9e-52 208.4 159 67.9
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 1.3e-51 207.2 156 68.6
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 1.7e-51 206.8 157 68.8
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 2.9e-51 206.1 154 70.1
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 2.9e-51 206.1 157 70.1
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 8.5e-51 204.5 154 67.5
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 1.9e-50 203.4 154 66.9
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 1.9e-50 203.4 155 69.0
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 3.2e-50 202.6 159 66.0
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 3.2e-50 202.6 154 68.2
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 3.2e-50 202.6 155 70.3
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 4.2e-50 202.2 155 68.4
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 4.2e-50 202.2 154 66.2
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 7.2e-50 201.4 154 68.2
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 7.2e-50 201.4 155 69.0
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 9.4e-50 201.1 157 68.2
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.2e-49 200.7 155 69.0
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 1.2e-49 200.7 155 68.4
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 1.2e-49 200.7 152 67.1
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 1.6e-49 200.3 155 66.5
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 2.1e-49 199.9 154 66.2
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 2.1e-49 199.9 181 60.8
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 2.7e-49 199.5 154 67.5
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 2.7e-49 199.5 154 68.8
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 3.6e-49 199.1 175 61.7
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 3.6e-49 199.1 160 65.6
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 3.6e-49 199.1 155 63.2
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 6.1e-49 198.4 154 66.9
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 6.1e-49 198.4 154 66.2
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 6.1e-49 198.4 155 68.4
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 6.1e-49 198.4 156 66.0
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 6.1e-49 198.4 157 67.5
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 8.0e-49 198.0 155 65.2
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 8.0e-49 198.0 154 67.5
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.0e-48 197.6 154 66.2
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.4e-48 197.2 155 67.7
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 1.8e-48 196.8 154 68.2
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 1.8e-48 196.8 154 66.2
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 2.3e-48 196.4 154 64.3
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 5.2e-48 195.3 179 59.2
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 5.2e-48 195.3 155 64.5
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 6.8e-48 194.9 154 63.6
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 8.8e-48 194.5 154 67.5
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.2e-47 194.1 154 67.5
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.2e-47 194.1 154 66.9
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 1.5e-47 193.7 181 56.9
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 1.5e-47 193.7 181 56.9
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.5e-47 193.7 154 66.9
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 2.0e-47 193.4 182 58.2
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 2.6e-47 193.0 179 56.4
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.6e-47 193.0 154 67.5
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 2.6e-47 193.0 155 65.8
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 3.4e-47 192.6 154 66.9
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.4e-47 192.6 154 66.9
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 3.4e-47 192.6 181 56.9
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 3.4e-47 192.6 166 59.6
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 4.4e-47 192.2 181 56.4
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 4.4e-47 192.2 181 56.4
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 5.7e-47 191.8 182 57.1
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 5.7e-47 191.8 154 66.2
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.3e-46 190.7 139 74.1
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 1.7e-46 190.3 179 55.3
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 1.7e-46 190.3 153 68.0
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 2.8e-46 189.5 179 55.9
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 3.7e-46 189.1 156 63.5
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 3.7e-46 189.1 155 64.5
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 4.8e-46 188.7 179 55.9
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 6.3e-46 188.3 181 55.8
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 6.3e-46 188.3 153 64.1
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 8.3e-46 188.0 179 55.9
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 8.3e-46 188.0 180 56.7
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.1e-45 187.6 156 64.1
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 1.1e-45 187.6 156 65.4
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 1.4e-45 187.2 154 64.9
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 1.4e-45 187.2 179 55.9
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 1.4e-45 187.2 179 55.9
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 2.4e-45 186.4 157 61.1
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 3.1e-45 186.0 155 63.2
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 3.1e-45 186.0 179 55.9
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 3.1e-45 186.0 179 55.9
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 4.1e-45 185.7 179 55.3
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 5.4e-45 185.3 179 55.3
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 5.4e-45 185.3 181 56.4
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 5.4e-45 185.3 155 62.6
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 2.0e-44 183.3 182 55.5
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 7.7e-44 181.4 153 62.7
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 1.0e-43 181.0 154 64.3
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 1.3e-43 180.6 145 65.5
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.7e-43 180.3 154 61.0
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 1.7e-43 180.3 153 61.4
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 1.7e-43 180.3 153 61.4
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 2.9e-43 179.5 180 52.2
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 3.8e-43 179.1 181 54.7
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 5.0e-43 178.7 182 50.0
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 8.5e-43 177.9 193 53.4
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 1.5e-42 177.2 153 59.5
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.6e-41 173.7 176 53.4
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 6.1e-41 171.8 146 61.6
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 8.0e-41 171.4 154 61.7
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.0e-39 166.8 155 56.8
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 2.7e-36 156.4 180 46.7
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 1.3e-35 154.1 127 63.0
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 1.5e-34 150.6 180 46.7
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 5.5e-34 148.7 155 56.1
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 3.6e-33 146.0 125 63.2
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 2.0e-31 140.2 196 43.4
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.4e-29 134.0 179 45.3
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 2.5e-26 123.2 104 63.5
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 9.2e-21 104.8 100 55.0
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 2.3e-16 90.1 159 37.1
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 5.2e-16 89.0 98 51.0
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 8.9e-16 88.2 177 36.2
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 5.8e-15 85.5 182 34.1
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 6.4e-14 82.0 67 61.2
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 8.6e-11 71.6 68 54.4
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 3.3e-10 69.7 48 79.2
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 1.2e-09 67.8 74 41.9
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 2.9e-06 56.6 104 42.3
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 4.9e-06 55.8 183 25.1


User provided reference genes

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